BAC Information

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BAC

Clone NameB6Ng01-200P08
Chromosome17 (Build37)
Map Location 7,010,747 - 7,212,725
singlet/doubletdoublet
Overlap geneLOC100040654, Rshl2b, 1700122H20Rik, Tagap1, Rnaset2b
Upstream geneSynj2, Serac1, Gtf2h5, 2210038L17Rik, LOC545184, Tulp4, EG433058, Tmem181, LOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536, LOC100040556, LOC100040603, LOC100040596, LOC100040631, LOC100040616, Sytl3, Vil2
Downstream geneGm1604, Rps6ka2, LOC625031, Tcp10b, LOC100038857, LOC667055, 5830477G23Rik, LOC625102, Fndc1, EG634588, LOC100040748, LOC100040760, LOC667102, Tagap, Rshl2a, LOC100040822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200P08.bB6Ng01-200P08.g
ACCGA021866GA021867
length287927
definitionB6Ng01-200P08.b B6Ng01-200P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,212,439 - 7,212,725)(7,010,747 - 7,011,664)
sequence
cacatgtgagccaccagagggggaaaaaattaaagtagcaggttgtataa
ataaagttaaaaaatatcaataaaacataggatcaaaagacttaacactt
aaaaaacagtggccagctagagcctaagaaagttagagcctaggagagtt
ttgaaacttctctgcgcagacttccaagggcttggtaaacctggtaagga
aggacctctcacaggaatgagtattttacaaacaaccccagggtaattgt
catgtacagctgaaactgaaaattgtggggggggggg
gaattcaaacaaacgcaggatgtgtggggtgctcatttgctggcgtttcc
tgtgaccgagtaggctagctagctgaagtatcagagatttgttccaccac
tctggagtccaagatggacagcagtgtctcttcctgagggaacggtcttt
cccaagtctctcttcttaccttggagatggctgtcttctccctgtttctt
catgttctcttccctctgtgactccaggtccaaagtcatccttctgtgac
agtagccatattggattagaatcactcttatgacctcgctttaaactcca
tgagttctagaaagaccccgtctcttaacaggtcgcatttggaggtaaat
tggtagtaggacttttagcataggcctagtggggtttggtggtacactgt
ttcataagaggggtagggagcagctatgcacactggtgcagtgggtacca
gagggatctagttagtagcaaaagttagctccctgtacgctacactctgg
aaaacggagagtggccagagaatcccccctgactatgctcagagctttgc
tcattttctggaaaaggctcaaccaaaatagaaagattttccaaaccttt
atgggttgagttgtattcttcaacaaaaaagcgtctgagtgtgggagcac
atgccagtaatcccagcacacgaaaggccgaagcagatctttgtgaattt
tggccagcctggactacatagcaaactcccagaacagtaggactccatag
agaaaccctgtggtaaacaaacaagcaaacgggcagacagacagacagac
agacaatctgatattttcacagggggacctaagattgcatgaaaatccca
aggtgtgaacatcacaaagaagcttaggagatcttgtgtctttgagtgtc
taggggtatggggagcggttcacattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_7212439_7212725
seq2: B6Ng01-200P08.b_54_340 (reverse)

seq1  CCCCCCCCCCCACAATTTTCAGTTTCAGCTGTACATGACAATTACCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCACAATTTTCAGTTTCAGCTGTACATGACAATTACCCTGG  50

seq1  GGTTGTTTGTAAAATACTCATTCCTGTGAGAGGTCCTTCCTTACCAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTTGTAAAATACTCATTCCTGTGAGAGGTCCTTCCTTACCAGGTT  100

seq1  TACCAAGCCCTTGGAAGTCTGCGCAGAGAAGTTTCAAAACTCTCCTAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGCCCTTGGAAGTCTGCGCAGAGAAGTTTCAAAACTCTCCTAGGC  150

seq1  TCTAACTTTCTTAGGCTCTAGCTGGCCACTGTTTTTTAAGTGTTAAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTTCTTAGGCTCTAGCTGGCCACTGTTTTTTAAGTGTTAAGTCT  200

seq1  TTTGATCCTATGTTTTATTGATATTTTTTAACTTTATTTATACAACCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCCTATGTTTTATTGATATTTTTTAACTTTATTTATACAACCTGC  250

seq1  TACTTTAATTTTTTCCCCCTCTGGTGGCTCACATGTG  287
      |||||||||||||||||||||||||||||||||||||
seq2  TACTTTAATTTTTTCCCCCTCTGGTGGCTCACATGTG  287

seq1: chr17_7010747_7011664
seq2: B6Ng01-200P08.g_64_990

seq1  GAATTCAAACAAACGCAGGATGTGTGGGGTGCTCATTTGCTGGCGTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAAACGCAGGATGTGTGGGGTGCTCATTTGCTGGCGTTTCC  50

seq1  TGTGACCGAGTAGGCTAGCTAGCTGAAGTATCAGAGATTTGTTCCACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCGAGTAGGCTAGCTAGCTGAAGTATCAGAGATTTGTTCCACCAC  100

seq1  TCTGGAGTCCAAGATGGACAGCAGTGTCTCTTCCTGAGGGAACGGTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTCCAAGATGGACAGCAGTGTCTCTTCCTGAGGGAACGGTCTTT  150

seq1  CCCAAGTCTCTCTTCTTACCTTGGAGATGGCTGTCTTCTCCCTGTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTCTCTCTTCTTACCTTGGAGATGGCTGTCTTCTCCCTGTTTCTT  200

seq1  CATGTTCTCTTCCCTCTGTGACTCCAGGTCCAAAGTCATCCTTCTGTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCTCTTCCCTCTGTGACTCCAGGTCCAAAGTCATCCTTCTGTGAC  250

seq1  AGTAGCCATATTGGATTAGAATCACTCTTATGACCTCGCTTTAAACTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCCATATTGGATTAGAATCACTCTTATGACCTCGCTTTAAACTCCA  300

seq1  TGAGTTCTAGAAAGACCCCGTCTCTTAACAGGTCGCATTTGGAGGTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTAGAAAGACCCCGTCTCTTAACAGGTCGCATTTGGAGGTAAAT  350

seq1  TGGTAGTAGGACTTTTAGCATAGGCCTAGTGGGGTTTGGTGGTACACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTAGGACTTTTAGCATAGGCCTAGTGGGGTTTGGTGGTACACTGT  400

seq1  TTCATAAGAGGGGTAGGGAGCAGCTATGCACACTGGTGCAGTGGGTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGAGGGGTAGGGAGCAGCTATGCACACTGGTGCAGTGGGTACCA  450

seq1  GAGGGATCTAGTTAGTAGCAAAAGTTAGCTCCCTGTACGCTACACTCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATCTAGTTAGTAGCAAAAGTTAGCTCCCTGTACGCTACACTCTGG  500

seq1  AAAACGGAGAGTGGCCAGAGAATCCCCCCTGACTATGCTCAGAGCTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGGAGAGTGGCCAGAGAATCCCCCCTGACTATGCTCAGAGCTTTGC  550

seq1  TCATTTTCTGGAAAAGGCTCAACCAAAATAGAAAGATTTTCCAAACCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCTGGAAAAGGCTCAACCAAAATAGAAAGATTTTCCAAACCTTT  600

seq1  ATGGGTTGAGTTGTATTCTTCAACAAAAAAGCGTCTGAGTGTGGGAGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTGAGTTGTATTCTTCAACAAAAAAGCGTCTGAGTGTGGGAGCAC  650

seq1  ATGCCAGTAATCCCAGCACACGAAAGGCCGAAGCAGATCTTTGTGAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGCCAGTAATCCCAGCACACGAAAGGCCGAAGCAGATCTTTGTGAA-TT  699

seq1  TTGGCCAGCCTGGACTACATAGCAAACT-CCAGAACAGTCAGGACTCCAT  749
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  TTGGCCAGCCTGGACTACATAGCAAACTCCCAGAACAGT-AGGACTCCAT  748

seq1  AGAGAAACCCTGTGGTAAACAAACAAGCAAACGGGCAGACAGACAGACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCCTGTGGTAAACAAACAAGCAAACGGGCAGACAGACAGACAG  798

seq1  ACAGACAATCTGATA-CTTCACA-GGGGACCTAAGATTGCAAGAAAATCC  847
      |||||||||||||||  |||||| ||||||||||||||||| ||||||||
seq2  ACAGACAATCTGATATTTTCACAGGGGGACCTAAGATTGCATGAAAATCC  848

seq1  CAAGGTGTG-ACATCACAAAGAAGC-TAGGGAATC-TGTGTC-TTGAGTG  893
      ||||||||| ||||||||||||||| ||||  ||| |||||| |||||||
seq2  CAAGGTGTGAACATCACAAAGAAGCTTAGGAGATCTTGTGTCTTTGAGTG  898

seq1  CCTAGGGCT---GGGAGC-GTTCACATTG  918
       |||||| |   |||||| ||||||||||
seq2  TCTAGGGGTATGGGGAGCGGTTCACATTG  927