BAC Information

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BAC

Clone NameB6Ng01-201K02
Chromosome17 (Build37)
Map Location 14,845,063 - 14,845,944
singlet/doubletsinglet
Overlap geneLOC100041236
Upstream geneTcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856, Thbs2
Downstream geneWdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201K02.bB6Ng01-201K02.g
ACCGA022351GA022352
length655895
definitionB6Ng01-201K02.b B6Ng01-201K02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattcaggatattaaaaaatgcccattcctagaataagtcccatt
tatcatttattcttttcatgtcttgttaaaattttaagattgtcagttta
tattttaatggagaatgttgatctgtagattcttttatttggatagattt
gttttcatagtatggcattggccacataggatggagcttcaactgcccag
gagtatttgtgagtaaatacaccattacttctgtttaggcttggttcaat
tcaccagtgacatggcctggctctggaactttctttgtaagaagatatga
taactaatcttggctctcagtttgacactacagatgagaaaacctcaact
gatcaattgcctccatcagattagcctgtggggtattttcttgattgcta
attaatgtagaaatgtcctgtccatggtgtgtggtatcatccccaggcat
gtgggctgtataagaaaggtaacagagtcaggtatggtggtgcatgcctt
tagtcccagcactggggaggcagaagcaggtggatctctgtgagttaaag
gtcagcctggtctacacagcaggctctaaaacagccagagttacacagag
acatcctgtttcaaaaagagaagagaagaggaagggagaggagaggaggg
gaggg
gaattctcaggtcaaatggcaggagaactaaccgcatggtcccaagtgga
gaggtggtcagtgttggcactcaggcgggcaaacagcacatcagcacctc
gtcaaacactgaaattctgatatgggagcttctccactgtgcatgtagta
ccttccatgctttaaataatcagaatttaattaattagaattactgggaa
tgtgcattttgtctgatttgtctctgaagagttcacatttctgatgatat
tatagaactttaaagctttaactttctgatggcttcttggaggtttttta
tagagtccattcagttacctacatgaatggccttgctctttctggcctcc
tgcctgagggttctgttctttcctcctgactagagcttctagcacaaccc
cattcagagatgattcccttgttctgtgccttaggacttaggattttctc
agtgagtgtgatgtcacttacaaggctgtacagatgcctagaaggtgccc
ataaactcccagatttgttccctctcttcttttttcctatatgagtgctt
cacagtgttagtagaagagggagggtcagtttcatgttaagccaaagatg
gatccagctgaggcaagatggaagaaactttggtctgtcacatacacctg
ctagaatggttcttctgcctctgtacatctgaaaatgtctttttcgcttt
tggatttgaaaggtaagattggggatgggtgggtataataatctaggctt
ttctttttttggaagatggggtcttgtattcttattttatataagatggg
ttctttagagggatctgctcagcctccattctttccccacatcgtgtgcc
ccccacagaactcatccttccttcccttccttacatcccttcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_14845063_14845944
seq2: B6Ng01-201K02.g_68_962 (reverse)

seq1  AAGGAAGG-----AAGGAA-GGAAGGAAGGAAGAAGTTCTGT-GGGGGCA  43
      ||||||||     |||||| ||||||||||| | |||||||| |||||||
seq2  AAGGAAGGGATGTAAGGAAGGGAAGGAAGGATG-AGTTCTGTGGGGGGCA  49

seq1  CACGATGT-GGGAAAGAATGG-GGCTGAGCAGATCCCTCT-AAGAACCCA  90
      |||||||| |||||||||||| |||||||||||||||||| |||||||||
seq2  CACGATGTGGGGAAAGAATGGAGGCTGAGCAGATCCCTCTAAAGAACCCA  99

seq1  TC-TATAT-AAATAAGAATACAAGACCCCATCTTCCAAAAAA--GAAAGC  136
      || ||||| |||||||||||||||||||||||||||||||||   |||||
seq2  TCTTATATAAAATAAGAATACAAGACCCCATCTTCCAAAAAAAGAAAAGC  149

seq1  CTAGATTATTATACCCACCCATCCCCAATCTTACCTTTCAAATCCAAAAG  186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTATTATACCCACCCATCCCCAATCTTACCTTTCAAATCCAAAAG  199

seq1  CGAAAAAGACATTTTCAGATGTACAGAGGCAGAAGAACCATTCTAGCAGG  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAAGACATTTTCAGATGTACAGAGGCAGAAGAACCATTCTAGCAGG  249

seq1  TGTATGTGACAGACCAAAGTTTCTTCCATCTTGCCTCAGCTGGATCCATC  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGACAGACCAAAGTTTCTTCCATCTTGCCTCAGCTGGATCCATC  299

seq1  TTTGGCTTAACATGAAACTGACCCTCCCTCTTCTACTAACACTGTGAAGC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTAACATGAAACTGACCCTCCCTCTTCTACTAACACTGTGAAGC  349

seq1  ACTCATATAGGAAAAAAGAAGAGAGGGAACAAATCTGGGAGTTTATGGGC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATATAGGAAAAAAGAAGAGAGGGAACAAATCTGGGAGTTTATGGGC  399

seq1  ACCTTCTAGGCATCTGTACAGCCTTGTAAGTGACATCACACTCACTGAGA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTAGGCATCTGTACAGCCTTGTAAGTGACATCACACTCACTGAGA  449

seq1  AAATCCTAAGTCCTAAGGCACAGAACAAGGGAATCATCTCTGAATGGGGT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTAAGTCCTAAGGCACAGAACAAGGGAATCATCTCTGAATGGGGT  499

seq1  TGTGCTAGAAGCTCTAGTCAGGAGGAAAGAACAGAACCCTCAGGCAGGAG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTAGAAGCTCTAGTCAGGAGGAAAGAACAGAACCCTCAGGCAGGAG  549

seq1  GCCAGAAAGAGCAAGGCCATTCATGTAGGTAACTGAATGGACTCTATAAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAAGAGCAAGGCCATTCATGTAGGTAACTGAATGGACTCTATAAA  599

seq1  AAACCTCCAAGAAGCCATCAGAAAGTTAAAGCTTTAAAGTTCTATAATAT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCCAAGAAGCCATCAGAAAGTTAAAGCTTTAAAGTTCTATAATAT  649

seq1  CATCAGAAATGTGAACTCTTCAGAGACAAATCAGACAAAATGCACATTCC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAAATGTGAACTCTTCAGAGACAAATCAGACAAAATGCACATTCC  699

seq1  CAGTAATTCTAATTAATTAAATTCTGATTATTTAAAGCATGGAAGGTACT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATTCTAATTAATTAAATTCTGATTATTTAAAGCATGGAAGGTACT  749

seq1  ACATGCACAGTGGAGAAGCTCCCATATCAGAATTTCAGTGTTTGACGAGG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACAGTGGAGAAGCTCCCATATCAGAATTTCAGTGTTTGACGAGG  799

seq1  TGCTGATGTGCTGTTTGCCCGCCTGAGTGCCAACACTGACCACCTCTCCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATGTGCTGTTTGCCCGCCTGAGTGCCAACACTGACCACCTCTCCA  849

seq1  CTTGGGACCATGCGGTTAGTTCTCCTGCCATTTGACCTGAGAATTC  882
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGACCATGCGGTTAGTTCTCCTGCCATTTGACCTGAGAATTC  895