BAC Information

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BAC

Clone NameB6Ng01-203F18
Chromosome17 (Build37)
Map Location 73,512,149 - 73,538,389
singlet/doubletdoublet
Overlap geneLycat
Upstream geneAlk, Ypel5, Lbh
Downstream geneLOC668709, Capn13, LOC100043666, Galnt14, Ehd3, LOC240160, Xdh, Srd5a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203F18.bB6Ng01-203F18.g
ACCGA023597GA023598
length1,0781,003
definitionB6Ng01-203F18.b B6Ng01-203F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,537,309 - 73,538,389)(73,512,149 - 73,513,152)
sequence
gaattcagtttatgtaaagatagaggctaatatttgaaggatatattgta
gggcttaaaatataaatactttaagtcatttctaggactatgaacatgaa
aaataatgacctcttgtggttgcccataataaatccaattcataataagt
tcaaacagaagtcctgggtcggtgaggcagcggctgttttactggttggc
tttaataactgtttctgagacagccttacttatcagcctaggcgggcttg
gggctcactgagctcaggctgaccctgtgacaagctttctgcctgtgctt
cccaagtactgggattacaaatagcttaggccatcacacccagcttttga
tgaggaaaggaggcagatctggaagctatgttacagggaagagtgggaag
taaatgtggtaaaaagtaaactatattcaaatataaaattctcaaagaat
aaaaattgtatttgacttaataatatatttatacactgaaataacttgtc
taaaatacatttgatactgaaaatgttgaattcttgtcaagctaccctac
tttcatcctgagcacctatcctcacagtactgaattgacttgtacagaat
ttcactctagttaatttgagtgtgtgatattttacttatttgcaaggttt
ttataataaaatttatacaattatattttcaatgttgttttctttttggt
cttcccctcactccatgacactgggaattggacgcagggcctcacaacag
tcccccggtgagctctattcctagccatcttgtcattctgtattttgagg
cactgagtcaggaagttgctcacgctggtcttaaacttgtaatctgcatg
catcattctgagttcatggaacttcaggattgtatcttcaagtcagactt
gggtaccattaactgagtgacctaatgggttgtccatccattttgctcat
attcacacacagggtaggagatttgactagtggtgtgttagtttcataat
ttctgtaagctctaaccagcctacttactgtgagtcagttacttctgcaa
aaatgagaagctgtagtgctcatggatg
gaattcttctttctgcttaggctactgggcttgtcagactgttttggtag
ggaggccaggtgtttagcgtctgaaaaagaaaacaggaatggaaacagtc
ttccctgattggtaaggcccctttccatcctgtttcatcgccattcatca
ctgaggcagcaggcagcgcgcctgccgtcagggtgaacgtgtcttgtggc
tgccgtgggcccttcagattcaggttgactcagttcctgaagtggtgctt
gggtaggtttacatgaacagaaacagctgtgtgtgtggtggtggtggctc
acacctgtaatctcagcacttgaagggcaggcgaatctctgagtctgccg
ctaacctggtctacagagtgagttccaggacatggggtgggcatgggagg
gtttcctgaccattgacttttaaatcatttatagtgtatttttcttgttg
aaaaatgaatcctgtagtgagggctcttaaactcgcaaccatcacttcta
aaagttaaccttcccctcttgccgttacttgtgctttcagttttctatac
agatgtgtctgctttataaatgcagtactgcatgcagcctggtcctccca
gctttctcagcaccttctctccctcctcctcctactccttctcttctttc
tcttttatggacacttgcagttaaagcgttctgttcttattctgtaatga
aatacacttgacaaaaagttctgacctcttcaacatcctggatctccata
gacacttatgcttgcaggtgtctgccctgccacaccttgcctggcctcaa
ctgctctctgaagtagattctagggcctctacattcttgcatctgtcgtg
cccgcgaagcagtcctacgtgtacaatgctgtcaattcttctaccagctt
gacatgtgactaggatccctatggagcactgctatcagccttccacgcgc
ttatactgacgcacacttacccagacagctggctttcaagtcatgggagc
act
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_73537309_73538389
seq2: B6Ng01-203F18.b_42_1119 (reverse)

seq1  CATCCATGAACCACTACAGCTTCTCATTTTTCCAGAAGGAACTGACCTCA  50
      |||||||| | |||||||||||||||||||| |||||| |||||| ||||
seq2  CATCCATG-AGCACTACAGCTTCTCATTTTTGCAGAAGTAACTGA-CTCA  48

seq1  CAGGTAAGGTAGGCTGGGTTTGGGTTACAGAATTTAT-AAACTTACACAC  99
      || |||| ||||||||| |   | |||||||| |||| ||||| ||||||
seq2  CA-GTAA-GTAGGCTGGTTAGAGCTTACAGAAATTATGAAACTAACACAC  96

seq1  CACTAGTCAAATCTCCTACCCTGTGTGTGAATATGAGCAAAATGGATGGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTCAAATCTCCTACCCTGTGTGTGAATATGAGCAAAATGGATGGA  146

seq1  CAACCCCTTAGGTCACTCAGTTAATGGTACCCAAGTCTGACTTGAAGATA  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCATTAGGTCACTCAGTTAATGGTACCCAAGTCTGACTTGAAGATA  196

seq1  CAATCCTGAAGTTCCATGAACTCAGAATGATGCATGCAGATTACAAGTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTGAAGTTCCATGAACTCAGAATGATGCATGCAGATTACAAGTTT  246

seq1  AAGACCAGCCTGAGCAACTTCCTGACTCAGTGCCTCAAAATACAGAATGA  299
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAGCGTGAGCAACTTCCTGACTCAGTGCCTCAAAATACAGAATGA  296

seq1  CAAGATGGCTAGGAATAGAGCTCACCGGGGGACTGTTGTGAGGCCCTGCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGGCTAGGAATAGAGCTCACCGGGGGACTGTTGTGAGGCCCTGCG  346

seq1  TCCAATTCCCAGTGTCATGGAGTGAGGGGAAGACCAAAAAGAAAACAACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCCCAGTGTCATGGAGTGAGGGGAAGACCAAAAAGAAAACAACA  396

seq1  TTGAAAATATAATTGTATAAATTTTATTATAAAAACCTTGCAAATAAGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATATAATTGTATAAATTTTATTATAAAAACCTTGCAAATAAGTA  446

seq1  AAATATCACACACTCAAATTAACTAGAGTGAAATTCTGTACAAGTCAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCACACACTCAAATTAACTAGAGTGAAATTCTGTACAAGTCAATT  496

seq1  CAGTACTGTGAGGATAGGTGCTCAGGATGAAAGTAGGGTAGCTTGACAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTGTGAGGATAGGTGCTCAGGATGAAAGTAGGGTAGCTTGACAAG  546

seq1  AATTCAACATTTTCAGTATCAAATGTATTTTAGACAAGTTATTTCAGTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAACATTTTCAGTATCAAATGTATTTTAGACAAGTTATTTCAGTGT  596

seq1  ATAAATATATTATTAAGTCAAATACAATTTTTATTCTTTGAGAATTTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATATTATTAAGTCAAATACAATTTTTATTCTTTGAGAATTTTAT  646

seq1  ATTTGAATATAGTTTACTTTTTACCACATTTACTTCCCACTCTTCCCTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATATAGTTTACTTTTTACCACATTTACTTCCCACTCTTCCCTGT  696

seq1  AACATAGCTTCCAGATCTGCCTCCTTTCCTCATCAAAAGCTGGGTGTGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGCTTCCAGATCTGCCTCCTTTCCTCATCAAAAGCTGGGTGTGAT  746

seq1  GGCCTAAGCTATTTGTAATCCCAGTACTTGGGAAGCACAGGCAGAAAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAAGCTATTTGTAATCCCAGTACTTGGGAAGCACAGGCAGAAAGCT  796

seq1  TGTCACAGGGTCAGCCTGAGCTCAGTGAGCCCCAAGCCCGCCTAGGCTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGGGTCAGCCTGAGCTCAGTGAGCCCCAAGCCCGCCTAGGCTGA  846

seq1  TAAGTAAGGCTGTCTCAGAAACAGTTATTAAAGCCAACCAGTAAAACAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAGGCTGTCTCAGAAACAGTTATTAAAGCCAACCAGTAAAACAGC  896

seq1  CGCTGCCTCACCGACCCAGGACTTCTGTTTGAACTTATTATGAATTGGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCCTCACCGACCCAGGACTTCTGTTTGAACTTATTATGAATTGGAT  946

seq1  TTATTATGGGCAACCACAAGAGGTCATTATTTTTCATGTTCATAGTCCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGGGCAACCACAAGAGGTCATTATTTTTCATGTTCATAGTCCTA  996

seq1  GAAATGACTTAAAGTATTTATATTTTAAGCCCTACAATATATCCTTCAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGACTTAAAGTATTTATATTTTAAGCCCTACAATATATCCTTCAAA  1046

seq1  TATTAGCCTCTATCTTTACATAAACTGAATTC  1081
      ||||||||||||||||||||||||||||||||
seq2  TATTAGCCTCTATCTTTACATAAACTGAATTC  1078

seq1: chr17_73512149_73513152
seq2: B6Ng01-203F18.g_63_1065

seq1  GAATTCTTCTTTCTGCTTAGGCTACTGGGCTTGTCAGACTGTTTTGGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTTCTGCTTAGGCTACTGGGCTTGTCAGACTGTTTTGGTAG  50

seq1  GGAGGCCAGGTGTTTAGCGTCTGAAAAAGAAAACAGGAATGGAAACAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCAGGTGTTTAGCGTCTGAAAAAGAAAACAGGAATGGAAACAGTC  100

seq1  TTCCCTGATTGGTAAGGCCCCTTTCCATCCTGTTTCATCGCCATTCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGATTGGTAAGGCCCCTTTCCATCCTGTTTCATCGCCATTCATCA  150

seq1  CTGAGGCAGCAGGCAGCGCGCCTGCCGTCAGGGTGAACGTGTCTTGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCAGCAGGCAGCGCGCCTGCCGTCAGGGTGAACGTGTCTTGTGGC  200

seq1  TGCCGTGGGCCCTTCAGATTCAGGTTGACTCAGTTCCTGAAGTGGTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTGGGCCCTTCAGATTCAGGTTGACTCAGTTCCTGAAGTGGTGCTT  250

seq1  GGGTAGGTTTACATGAACAGAAACAGCTGTGTGTGTGGTGGTGGTGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGTTTACATGAACAGAAACAGCTGTGTGTGTGGTGGTGGTGGCTC  300

seq1  ACACCTGTAATCTCAGCACTTGAAGGGCAGGCGAATCTCTGAGTCTGCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGTAATCTCAGCACTTGAAGGGCAGGCGAATCTCTGAGTCTGCCG  350

seq1  CTAACCTGGTCTACAGAGTGAGTTCCAGGACATGGGGTGGGCATGGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTGGTCTACAGAGTGAGTTCCAGGACATGGGGTGGGCATGGGAGG  400

seq1  GTTTCCTGACCATTGACTTTTAAATCATTTATAGTGTATTTTTCTTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTGACCATTGACTTTTAAATCATTTATAGTGTATTTTTCTTGTTG  450

seq1  AAAAATGAATCCTGTAGTGAGGGCTCTTAAACTCGCAACCATCACTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAATCCTGTAGTGAGGGCTCTTAAACTCGCAACCATCACTTCTA  500

seq1  AAAGTTAGCCTTCCCCTCTTGCCGTTACTTGTGCTTTCAGTTTTCTATAC  550
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAACCTTCCCCTCTTGCCGTTACTTGTGCTTTCAGTTTTCTATAC  550

seq1  AGATGTGTCTGCTTTATAAATGCAGTACTGCATGCAGCCTGGTCCTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGTCTGCTTTATAAATGCAGTACTGCATGCAGCCTGGTCCTCCCA  600

seq1  GCTTTCTCAGCACCTTCTCTCCCTCCTCCTCCTCCTCCTTCTCTTCTTTC  650
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCTTTCTCAGCACCTTCTCTCCCTCCTCCTCCTACTCCTTCTCTTCTTTC  650

seq1  TCTTTTATGGACACTTGCAGTTAAAGCGTTCTGTTCTTATTCTGTAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATGGACACTTGCAGTTAAAGCGTTCTGTTCTTATTCTGTAATGA  700

seq1  AATACACTTGACAAAAGGTTCTGACCTCTTCAACATCCTGGATCTCCATA  750
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATACACTTGACAAAAAGTTCTGACCTCTTCAACATCCTGGATCTCCATA  750

seq1  GACACTTAGGCTTGCAGGTGTCTGCCCTGCCACACCTTGCCTGGCCTCAG  800
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  GACACTTATGCTTGCAGGTGTCTGCCCTGCCACACCTTGCCTGGCCTCAA  800

seq1  CTGCTCTCTGAAGTAGATTCTAGGGCCTCTTCATTCTTGCATCTGTCGTG  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGCTCTCTGAAGTAGATTCTAGGGCCTCTACATTCTTGCATCTGTCGTG  850

seq1  CCAGCAAAGCCAGTCCTACGTGGACAATGCTGTCACATTCTTCTACCAGC  900
      || || ||| |||||||||||| |||||||||||| ||||||||||||||
seq2  CCCGCGAAG-CAGTCCTACGTGTACAATGCTGTCA-ATTCTTCTACCAGC  898

seq1  TTGAGATGTGACTAGGTCCCCTTTGGAGCACTGCTATCAG-CTTCCACGT  949
      |||| |||||||||||  |||| ||||||||||||||||| |||||||| 
seq2  TTGACATGTGACTAGGATCCCTATGGAGCACTGCTATCAGCCTTCCACGC  948

seq1  GCTTATACTGGAGAACACTTACCCAGACAGCT-GCTTTCAAGGCAAGGGG  998
      ||||||||||  | |||||||||||||||||| ||||||||| | | |||
seq2  GCTTATACTGACGCACACTTACCCAGACAGCTGGCTTTCAAGTC-ATGGG  997

seq1  AGCACT  1004
      ||||||
seq2  AGCACT  1003