BAC Information

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BAC

Clone NameB6Ng01-204N05
Chromosome17 (Build37)
Map Location 34,334,259 - 34,335,255
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1
Downstream genePsmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204N05.bB6Ng01-204N05.g
ACCGA024662GA024663
length1,1281,012
definitionB6Ng01-204N05.b B6Ng01-204N05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatttctgtacaatggtaataataataataataattttctgtctt
gttccatttttcactcagtagtgaatggtccagtctccatgagtttccat
tcttcctgtaatttttgatatcctggtttaaactatggtaatcaagtaag
atgtgcagcatttgaagaggaaactttggttccttgtaaaatcagctgtg
ttggatggtgttttgctggggcaattatgtgaaggagcattttcctgaag
cagacacacgtgaaagtatgttttgctaaagccaacacataaaagaatgt
ttagccaaatcagacacaggtaaaaggatgcatgaaaggacatgagataa
aggattcttcacgaagggcatgcatgtattggtctacctcaattgagctc
catttgtagagactccatacagagaaatgcaccaaaaatctcctggtggt
atgcttcttccacttcctcagactcagcattgaggacaaggtagaagaaa
taggtacttcagtctacaaaatgtcagatcttaaaaaaaaattaggcata
aaacatcaaggaaatgtcagacattaggaacacatcaaatctatggatag
tagggataaaggaaagagatgagaaccaggtcaaggtcacagaaaccatt
ttcaccaaaatcatagaagaaaatttcccaaatttaagaccgttcttcag
gttgggagtgagagaaagaatgggcatcagccaggaggagagactgagag
ggtcaatgggaaaggctgagctgggtccccagtgattttaatgcattttc
ttaatttatgccattgtcacagtaaggtcaaattccatcatcgccccttc
tggtggaaagatcaagagatgctgactaacctcacagaagaacacaaagc
aggaaacatatagtctggattcaagagtttcttggctccagatcttcacc
agtcagatacaactaaggcaaggaagtatcttaaagaatagattgactca
tccagagagagtcctaagatgaagagcagctgataacttggggagacatc
aaaactttgaactatccatcccaaccttttggagacaagagggtacaata
cttactgttcccctccaattgaatgcct
gaattctgttttacttctgggtccatcagcttttatttcctggggctctc
atttctctttactgctcacccacggactcctagtgctgagctggaccggg
cggcagcccctccctctccgcaccccaaggcagcagcaactgcatcttgg
agtccttctcttcctcgctgaggctggaggaagcgcggtagcgccgcggg
tggggaccccagaaaatcagactggataacctcgcccgcccgttcagatt
ctttcatcttctcctcagcggcacacgccgggataatctcaatgaaatgg
ataggattagccagtaaatctcttccattcagggagggcccggtgtgtga
cgtcagcagttcctgggcagataatgtccataaaggttgcaaagaagagg
tggggttgaggattcaaggaaggagcgcgcagccctgacttgcgcgacgt
gagcagccccgggcaagggcgcgtcctcgtgggtggctcagggtagtgag
actgttgaaccaagaggggccctaggagggacacatgaaaaggcccgact
gagtcctctccttggttcgtctttctccgttttttcctggttgtcccagg
acctaaagacccctgtgcatccatttatcgcattttccagtttctataaa
atgatgctcatttatttgagtgctgcccccatccccaggacgcacgccta
ggtggatctgctcaatactcctctcaggttccaacgttctagacaacctc
tttaggagataggaccctattcagtcctccgctgttcccagaagatgccc
ccccccgtcccccgcctgtgggtcttcacgcaccccactgctagcggcct
ccgaaggcgcacctccttcttccaccccacagcccattcttctagcttgg
ttttccactgatgtggcagcaggaaaaactcgtccccaacacattgtttt
tagttcagaacccccctatttaactggggcttctactcggaaagggccag
ggggaatggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_34334259_34335255
seq2: B6Ng01-204N05.g_68_1079

seq1  GAATTCTGTTTTACTTCTGGGTCCATCAGCTTTTATTTCCTGGGGCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTTACTTCTGGGTCCATCAGCTTTTATTTCCTGGGGCTCTC  50

seq1  ATTTCTCTTTACTGCTCACCCACGGACTCCTAGTGCTGAGCTGGACCGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTTTACTGCTCACCCACGGACTCCTAGTGCTGAGCTGGACCGGG  100

seq1  CGGCAGCCCCTCCCTCTCCGCACCCCAAGGCAGCAGCAACTGCATCTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGCCCCTCCCTCTCCGCACCCCAAGGCAGCAGCAACTGCATCTTGG  150

seq1  AGTCCTTCTCTTCCTCGCTGAGGCTGGAGGAAGCGCGGTAGCGCCGCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTCTCTTCCTCGCTGAGGCTGGAGGAAGCGCGGTAGCGCCGCGGG  200

seq1  TGGGGACCCCAGAAAATCAGACTGGATAACCTCGCCCGCCCGTTCAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACCCCAGAAAATCAGACTGGATAACCTCGCCCGCCCGTTCAGATT  250

seq1  CTTTCATCTTCTCCTCAGCGGCACACGCCGGGATAATCTCAATGAAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCTTCTCCTCAGCGGCACACGCCGGGATAATCTCAATGAAATGG  300

seq1  ATAGGATTAGCCAGTAAATCTCTTCCATTCAGGGAGGGCCCGGTGTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATTAGCCAGTAAATCTCTTCCATTCAGGGAGGGCCCGGTGTGTGA  350

seq1  CGTCAGCAGTTCCTGGGCAGATAATGTCCATAAAGGTTGCAAAGAAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGCAGTTCCTGGGCAGATAATGTCCATAAAGGTTGCAAAGAAGAGG  400

seq1  TGGGGTTGAGGATTCAAGGAAGGAGCGCGCAGCCCTGACTTGCGCGACGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTGAGGATTCAAGGAAGGAGCGCGCAGCCCTGACTTGCGCGACGT  450

seq1  GAGCAGCCCCGGGCAAGGGCGCGTCCTCGTGGGTGGCTCAGGGTAGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCCCGGGCAAGGGCGCGTCCTCGTGGGTGGCTCAGGGTAGTGAG  500

seq1  ACTGTTGAACCAAGAGGGGCCCTAGGAGGGACACATGAAAAGGCCCGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGAACCAAGAGGGGCCCTAGGAGGGACACATGAAAAGGCCCGACT  550

seq1  GAGTCCTCTCCTTGGTTCGTCTTTCTCCGTTTTTTCCTGGTTGTCCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTCTCCTTGGTTCGTCTTTCTCCGTTTTTTCCTGGTTGTCCCAGG  600

seq1  ACCTAAAGACCCCTGTGCATCCATTTATCGCATTTTCCAGTTTCTATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAGACCCCTGTGCATCCATTTATCGCATTTTCCAGTTTCTATAAA  650

seq1  ATGATGCTCATTTATTTGAGTGCTGCCCCCATCCCCAGGACGCACGCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTCATTTATTTGAGTGCTGCCCCCATCCCCAGGACGCACGCCTA  700

seq1  GGTGGATCTGCTCAATACTCCTCTCAGGTTCCAACGTTCTAGACAACCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATCTGCTCAATACTCCTCTCAGGTTCCAACGTTCTAGACAACCTC  750

seq1  TTTAGGAGATAGGACCCTATTCAGTCCTCCGCTGTTCCCAGAAGATGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAGATAGGACCCTATTCAGTCCTCCGCTGTTCCCAGAAGATGCCC  800

seq1  CCCCCCGTCCCCCGCCTGTGGGTCTTCACGCACCCCACTGCTAGGCGGCC  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCCCCGTCCCCCGCCTGTGGGTCTTCACGCACCCCACTGCTA-GCGGCC  849

seq1  TCCGAAGGCGCACCT-CTTCTTCCACCCCACAGCCCATTC-TCTAGC-TG  897
      ||||||||||||||| |||||||||||||||||||||||| |||||| ||
seq2  TCCGAAGGCGCACCTCCTTCTTCCACCCCACAGCCCATTCTTCTAGCTTG  899

seq1  GTTT--CACTGATGTGGCAGCAGG-AAAACTCGTCCCCAACACATTG-TT  943
      ||||  |||||||||||||||||| |||||||||||||||||||||| ||
seq2  GTTTTCCACTGATGTGGCAGCAGGAAAAACTCGTCCCCAACACATTGTTT  949

seq1  TTAGTTCAGACACCC----ATTAACTGGG--CTCTACTCGGAAAGGG-CA  986
      ||||||||||  |||     |||||||||   ||||||||||||||| ||
seq2  TTAGTTCAGAACCCCCCTATTTAACTGGGGCTTCTACTCGGAAAGGGCCA  999

seq1  GGGG--ATGGGGG  997
      ||||  |||||||
seq2  GGGGGAATGGGGG  1012