MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-206E21
Chromosome	15 (Build37)	17 (Build37)
Map Location	85,765,783 - 85,766,611	71,486,732 - 71,487,099
singlet/doublet	singlet	singlet
Overlap gene	Celsr1
Upstream gene	Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu
Downstream gene	BC021523, Cerk, LOC100042300, Tbc1d22a
Link	Open Mouse BAC browser

Click to get alignment info.

name	Nup50 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18141 MGI:1351502
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5031439G07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:223739 MGI:2444899
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC628135 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:628135
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 83 ESTs, 6 Proteins pseudo : _no_value

name	Upk3a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22270 MGI:98914
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	3110048E14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73225 MGI:1920475
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Smc1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140557 MGI:2154049
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ribc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67747 MGI:1914997
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 6 ESTs, 3 Proteins

name	Fbln1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14114 MGI:95487
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atxn10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54138 MGI:1859293
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG223745 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:223745 MGI:3647768
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins

name	Wnt7b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22422 MGI:98962
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042240 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042240
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Ppara (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19013 MGI:104740
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2210021J22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72355 MGI:1919605
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pkdrej (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18766 MGI:1338786
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AW124722 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:239570 MGI:2146198
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gtse1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:29870 MGI:1352755
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trmu (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72026 MGI:1919276
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Celsr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12614 MGI:1100883
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC021523 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:223752 MGI:2676308
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cerk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:223753 MGI:2386052
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042300 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042300
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 54 ESTs

name	Tbc1d22a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:223754 MGI:1289265
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nup50 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38016153 GeneID:18141 MGI:1351502
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nucleoporin 50 transcript_id : NM_016714.2

name	5031439G07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142387530 GeneID:223739 MGI:2444899
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5031439G07 gene transcript_id : NM_001033273.2

name	Upk3a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:12963692 GeneID:22270 MGI:98914
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : uroplakin 3A transcript_id : NM_023478.1

name	3110048E14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801484 GeneID:73225 MGI:1920475
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 3110048E14 gene transcript_id : NM_177067.2

name	3110048E14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47059085 GeneID:73225 MGI:1920475
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 3110048E14 gene transcript_id : NM_133750.3

name	Smc1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:17978289 GeneID:140557 MGI:2154049
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : structural maintenace of chromosomes 1B transcript_id : NM_080470.1

name	Ribc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94398827 GeneID:67747 MGI:1914997
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 6 ESTs, 3 Proteins product : RIB43A domain with coiled-coils 2, transcript variant 1 transcript_id : XM_283290.4

name	Fbln1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753821 GeneID:14114 MGI:95487
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fibulin 1 transcript_id : NM_010180.1

name	Atxn10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142376666 GeneID:54138 MGI:1859293
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ataxin 10 transcript_id : NM_016843.3

name	EG223745 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94398828 GeneID:223745 MGI:3647768
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins product : predicted gene, EG223745 transcript_id : XM_139514.3

name	Wnt7b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328152 GeneID:22422 MGI:98962
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : wingless-related MMTV integration site 7B transcript_id : NM_009528.2

name	Ppara (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144227253 GeneID:19013 MGI:104740
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peroxisome proliferator activated receptor alpha transcript_id : NM_011144.3

name	2210021J22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39930552 GeneID:72355 MGI:1919605
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2210021J22 gene transcript_id : NM_197998.1

name	Pkdrej (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115583674 GeneID:18766 MGI:1338786
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : polycystic kidney disease (polycystin) and REJ (sperm receptor for egg jelly, sea urchin homolog)-like transcript_id : NM_011105.2

name	AW124722 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381878 GeneID:239570 MGI:2146198
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AW124722 transcript_id : NM_001033337.2

name	Gtse1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305118 GeneID:29870 MGI:1352755
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G two S phase expressed protein 1 transcript_id : NM_013882.1

name	Trmu (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130414 GeneID:72026 MGI:1919276
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase transcript_id : NM_028063.2

name	Celsr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115648152 GeneID:12614 MGI:1100883
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cadherin EGF LAG seven-pass G-type receptor 1 transcript_id : NM_009886.2

name	BC021523 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368891 GeneID:223752 MGI:2676308
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC021523 transcript_id : NM_172611.2

name	Cerk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62899060 GeneID:223753 MGI:2386052
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ceramide kinase transcript_id : NM_145475.3

name	LOC100042300 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149266718 GeneID:100042300
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 54 ESTs product : hypothetical protein LOC100042300 transcript_id : XM_001477906.1

name	Tbc1d22a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42734462 GeneID:223754 MGI:1289265
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TBC1 domain family, member 22a transcript_id : NM_145476.2

name	Nup50 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38016154 CCDS:CCDS27714.1 GeneID:18141 MGI:1351502
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005643 - nuclear pore [Evidence IDA]; GO:0019867 - outer membrane [Evidence IEA] GO_function : GO:0005487 - nucleocytoplasmic transporter activity [Evidence TAS]; GO:0015288 - porin activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0001841 - neural tube formation [Evidence IMP]; GO:0006913 - nucleocytoplasmic transport [Evidence TAS] codon_start : 1 note : nuclear pore associated protein 60 kDa; nucleoprotein 50 product : nucleoporin 50 protein_id : NP_057923.2

name	5031439G07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701776 CCDS:CCDS27715.1 GeneID:223739 MGI:2444899
definition	codon_start : 1 product : hypothetical protein LOC223739 protein_id : NP_001028445.1

name	Upk3a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963693 CCDS:CCDS27716.1 GeneID:22270 MGI:98914
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 exception : mismatches in translation note : proplakin IIIa product : uroplakin 3A protein_id : NP_075967.1

name	3110048E14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526958 CCDS:CCDS27717.1 GeneID:73225 MGI:1920475
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : hypothetical protein LOC73225 isoform a protein_id : NP_598511.1

name	3110048E14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47059167 GeneID:73225 MGI:1920475
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform b is encoded by transcript variant 2 product : hypothetical protein LOC73225 isoform b protein_id : NP_796041.1

name	Smc1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:17978290 CCDS:CCDS27718.1 GeneID:140557 MGI:2154049
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0000775 - chromosome, pericentric region [Evidence IDA]; GO:0000800 - lateral element [Evidence IDA]; GO:0000795 - synaptonemal complex [Evidence IDA] GO_function : GO:0016887 - ATPase activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IDA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051276 - chromosome organization and biogenesis [Evidence IEA]; GO:0007126 - meiosis [Evidence IPI]; GO:0007062 - sister chromatid cohesion [Evidence IDA] codon_start : 1 note : SMC product : SMC (structural maintenace of chromosomes 1)-like 2 protein_id : NP_536718.1

name	Ribc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82957597 GeneID:67747 MGI:1914997
definition	codon_start : 1 product : RIB43A domain with coiled-coils 2 isoform 1 protein_id : XP_283290.2

name	Fbln1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753822 CCDS:CCDS27719.1 GeneID:14114 MGI:95487
definition	GO_component : GO:0005604 - basement membrane [Evidence IDA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0016504 - protease activator activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] codon_start : 1 exception : mismatches in translation note : BM-90/fibulin extracellular matrix glyroprotein product : fibulin 1 protein_id : NP_034310.1

name	Atxn10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83649709 GeneID:54138 MGI:1859293
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : brain protein E46; spinocerebellar ataxia 10; testis expressed gene 169 product : ataxin 10 protein_id : NP_058539.2

name	EG223745 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94398829 GeneID:223745 MGI:3647768
definition	codon_start : 1 product : hypothetical protein protein_id : XP_139514.3

name	Wnt7b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328153 GeneID:22422 MGI:98962
definition	GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0005102 - receptor binding [Evidence TAS]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007267 - cell-cell signaling [Evidence TAS]; GO:0007275 - development [Evidence IEA]; GO:0007223 - frizzled-2 signaling pathway [Evidence IEA]; GO:0009887 - organ morphogenesis [Evidence IMP]; GO:0045669 - positive regulation of osteoblast differentiation [Evidence IDA]; GO:0007165 - signal transduction [Evidence TAS]; GO:0016055 - Wnt receptor signaling pathway [Evidence IGI] codon_start : 1 exception : mismatches in translation product : wingless-related MMTV integration site 7B protein_id : NP_033554.2

name	Ppara (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543500 CCDS:CCDS27721.1 GeneID:19013 MGI:104740
definition	GO_component : GO:0005634 - nucleus [Evidence TAS] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0004879 - ligand-dependent nuclear receptor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] [Evidence ISS]; GO:0046982 - protein heterodimerization activity [Evidence TAS]; GO:0004872 - receptor activity [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IDA] [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence TAS]; GO:0003700 - transcription factor activity [Evidence IMP] [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008544 - epidermis development [Evidence IMP]; GO:0006631 - fatty acid metabolism [Evidence IMP] [Evidence TAS]; GO:0006006 - glucose metabolism [Evidence TAS]; GO:0006629 - lipid metabolism [Evidence TAS]; GO:0045941 - positive regulation of transcription [Evidence IMP]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0019217 - regulation of fatty acid metabolism [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence TAS]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : peroxisome proliferator activated receptor alpha protein_id : NP_035274.2

name	2210021J22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930553 CCDS:CCDS27722.1 GeneID:72355 MGI:1919605
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC72355 protein_id : NP_932115.1

name	Pkdrej (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:115583675 CCDS:CCDS27723.1 GeneID:18766 MGI:1338786
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : receptor for egg jelly-like protein protein_id : NP_035235.2

name	AW124722 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701834 CCDS:CCDS27724.1 GeneID:239570 MGI:2146198
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC239570 protein_id : NP_001028509.1

name	Gtse1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305119 CCDS:CCDS27725.1 GeneID:29870 MGI:1352755
definition	GO_component : GO:0005874 - microtubule [Evidence IEA] codon_start : 1 function : p53 regulated microtubule localised protein product : G two S phase expressed protein 1 protein_id : NP_038910.1

name	Trmu (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312518 CCDS:CCDS27726.1 GeneID:72026 MGI:1919276
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004808 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity [Evidence IEA] GO_process : GO:0008033 - tRNA processing [Evidence IEA] codon_start : 1 product : tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 protein_id : NP_082339.1

name	Celsr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:115648153 GeneID:12614 MGI:1100883
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence TAS] [Evidence IEA]; GO:0004930 - G-protein coupled receptor activity [Evidence IEA] [Evidence NAS]; GO:0046983 - protein dimerization activity [Evidence NAS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0045176 - apical protein localization [Evidence IMP]; GO:0007267 - cell-cell signaling [Evidence NAS]; GO:0007417 - central nervous system development [Evidence NAS]; GO:0007275 - development [Evidence IEA]; GO:0042249 - establishment of polarity of embryonic epithelium [Evidence IMP]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0010003 - gastrulation (sensu Mammalia) [Evidence NAS]; GO:0007156 - homophilic cell adhesion [Evidence IEA]; GO:0042472 - inner ear morphogenesis [Evidence IMP]; GO:0007626 - locomotory behavior [Evidence IMP]; GO:0001843 - neural tube closure [Evidence IMP]; GO:0007218 - neuropeptide signaling pathway [Evidence IEA]; GO:0046928 - regulation of neurotransmitter secretion [Evidence NAS]; GO:0007165 - signal transduction [Evidence NAS] [Evidence IEA] codon_start : 1 note : seven-pass transmembrane receptor product : cadherin EGF LAG seven-pass G-type receptor 1 precursor protein_id : NP_034016.2

name	BC021523 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369870 CCDS:CCDS27727.1 GeneID:223752 MGI:2676308
definition	GO_component : GO:0009573 - ribulose bisphosphate carboxylase complex (sensu Magnoliophyta) [Evidence IEA] GO_function : GO:0016984 - ribulose-bisphosphate carboxylase activity [Evidence IEA] GO_process : GO:0015977 - carbon utilization by fixation of carbon dioxide [Evidence IEA] codon_start : 1 product : hypothetical protein LOC223752 protein_id : NP_766199.1

name	Cerk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62899061 CCDS:CCDS27728.1 GeneID:223753 MGI:2386052
definition	GO_component : GO:0000299 - integral to membrane of membrane fraction [Evidence ISS]; GO:0005624 - membrane fraction [Evidence ISS] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004685 - calcium- and calmodulin-dependent protein kinase activity [Evidence ISS]; GO:0001729 - ceramide kinase activity [Evidence ISS]; GO:0004143 - diacylglycerol kinase activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence ISS] [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006672 - ceramide metabolism [Evidence ISS]; GO:0007205 - protein kinase C activation [Evidence IEA] codon_start : 1 product : ceramide kinase protein_id : NP_663450.3

name	LOC100042300 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149266719 GeneID:100042300
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477956.1

name	Tbc1d22a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42734463 CCDS:CCDS27729.1 GeneID:223754 MGI:1289265
definition	GO_function : GO:0005096 - GTPase activator activity [Evidence IEA] codon_start : 1 product : TBC1 domain family, member 22a protein_id : NP_663451.2

name	LOC100042240 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042240
definition	number : 1 pseudo : _no_value

name	LOC100042240 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042240
definition	number : 2 pseudo : _no_value

name	LOC628135 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149266783 GeneID:628135
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 83 ESTs, 6 Proteins product : similar to SET translocation pseudo : _no_value transcript_id : XR_034574.1

clone name	MSMg01-425P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-193L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444L06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-094E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-213B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162I21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207C20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-250L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-161N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105E24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324H07
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-206E21.b	B6Ng01-206E21.g
ACC	GA025755	GA025756
length	829	203
definition	B6Ng01-206E21.b	B6Ng01-206E21.g
singlet/doublet	singlet	singlet
BLAST hit	unique	unique
Map location.	(85,765,783 - 85,766,611)	(71,486,732 - 71,487,099)
sequence	gaattcccatggcccctgctgtccccatgtcctcataaagccatagcttg tttcttctacttcctgggccctggattcttgttcttcatcccagtcaggc agctggagtggagtcggagatagtcagaggagaggtggaccctaaggagt gtctgtaccaagctcccatttcacgtgaggcaaattgaagctagaggctc gtgtaacctaggccccatggatcctgagtcagccagagaacccctcagca gagctcagagagtgggaggagtcagggatgcccagagccctcccttcttc cagctcgctgccagaggtcacagggcccttggatagatttgtttgcattg gctggagggtggggccatcagcccagacagaagccagcctctagcctgtg cctgcccacttacctgaggtcacagccccagaggttgggggttgttggtg tgcatggcaaattctttcctcattagctgtaatttcacaaggttcccggc tggccagaagctcactttggcctgaacttggaagcaccgccctgcctggg gatgctatttctctgtgggtgttgctctgtcggaacatattaaattggcc gttttcattcaggtgatgacgggcgcctacaagctgtcattagtgtacct ggagggaaaaaggctctgttcagcaaggttagccctgactaactctggta gccacagaattaaagactggatacaccaaggagggctttaaggggtcctg tagacctcatgagcaacccaaggggccaccttgttatggttcgcagaggc tgctctaacaggaattgggggtgggtgta	cgagaatgaaatggctaacaaaagtagacatatcagtaaactctttgaga gagcctacctggatcaataaggcaaaatggcaactaagtccttatgtcag cctccagcctccatacacaccctcacacacatgcacctgtatacacacat gtatatgtgtatgtattggtgtatatatgtgtgtgtgtgggggggtgtgt gtg
quality values	Open. Hide. 41 25 28 35 58 54 54 37 23 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 39 62 62 62 62 62 35 42 22 34 22 30 27 28 27 24 38 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 59 62 62 62 54 49 54 62 62 62 62 62 59 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 59 59 62 62 62 59 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 54 54 42 42 49 62 62 62 59 59 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 47 54 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 46 62 62 62 62 62 62 62 62 62 62 47 42 62 62 62 62 62 62 62 62 62 62 62 58 54 54 58 58 52 58 54 54 58 54 54 54 58 58 54 54 39 38 58 47 52 42 52 52 58 47 54 58 54 54 58 58 54 54 58 47 52 58 58 58 52 47 58 58 58 42 26 58 52 58 28 34 52 58 52 43 54 58 54 54 58 58 58 41 54 46 54 54 54 58 58 53 42 26 49 58 51 33 51 58 47 50 42 50 52 58 50 37 31 58 46 49 58 58 58 58 40 45 19 58 53 58 51 35 49 41 28 39 49 50 50 37 58 27 58 47 40 29 50 49 52 51 46 27 39 37 58 53 53 52 52 58 51 35 46 32 38 50 29 39 19 9 37 37 37 50 52 58 49 37 41 32 39 54 58 25 39 37 52 39 50 22 15 39 51 39 36 20 58 49 37 39 54 29 44 37 21 54 54 50 35 39 33 28 51 35 47 24 41 40 54 53 49 33 41 40 46 19 45 32 27 39 27 22 26 37 32 54 49 51 37 34 26 40 29 18 27 34 44 11 15 19 13 22 16 49 34 27 35 37 18 51 6 40 31 33 42 34 34 31 35 40 37 37 16 12 25 28 15 17 29 28 16 21 21 33 13 17 25 20 4 7 9 9	Open. Hide. 59 59 62 62 59 59 49 33 33 34 48 59 62 54 59 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 49 62 62 62 62 62 49 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 56 41 41 17 21 17 23 15 47 19 20 31 52 52 62 46 46 15 9

Alignment Information

BAC End 1

BAC End 2

seq1: chr15_85765783_85766611
seq2: B6Ng01-206E21.b_46_874 (reverse)

seq1  TACCCCCACCCCCAATTCCTGTTAGAGCAGCCTCTGCGAACCATAACAAG  50
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCACCCCCAATTCCTGTTAGAGCAGCCTCTGCGAACCATAACAAG  50

seq1  GTGGCCCCTTGGGTTGCTCATGAGGTCTACAGGACCCCTTAAAGCCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCCTTGGGTTGCTCATGAGGTCTACAGGACCCCTTAAAGCCCTCC  100

seq1  TTGGTGTATCCAGTCTTTAATTCTGTGGCTACCAGAGTTAGTCAGGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTATCCAGTCTTTAATTCTGTGGCTACCAGAGTTAGTCAGGGCTA  150

seq1  ACCTTGCTGAACAGAGCCTTTTTCCCTCCAGGTACACTAATGACAGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCTGAACAGAGCCTTTTTCCCTCCAGGTACACTAATGACAGCTTG  200

seq1  TAGGCGCCCGTCATCACCTGAATGAAAACGGCCAATTTAATATGTTCCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCGCCCGTCATCACCTGAATGAAAACGGCCAATTTAATATGTTCCGA  250

seq1  CAGAGCAACACCCACAGAGAAATAGCATCCCCAGGCAGGGCGGTGCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAACACCCACAGAGAAATAGCATCCCCAGGCAGGGCGGTGCTTCC  300

seq1  AAGTTCAGGCCAAAGTGAGCTTCTGGCCAGCCGGGAACCTTGTGAAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGGCCAAAGTGAGCTTCTGGCCAGCCGGGAACCTTGTGAAATTA  350

seq1  CAGCTAATGAGGAAAGAATTTGCCATGCACACCAACAACCCCCAACCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAATGAGGAAAGAATTTGCCATGCACACCAACAACCCCCAACCTCT  400

seq1  GGGGCTGTGACCTCAGGTAAGTGGGCAGGCACAGGCTAGAGGCTGGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGTGACCTCAGGTAAGTGGGCAGGCACAGGCTAGAGGCTGGCTTC  450

seq1  TGTCTGGGCTGATGGCCCCACCCTCCAGCCAATGCAAACAAATCTATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGGCTGATGGCCCCACCCTCCAGCCAATGCAAACAAATCTATCCA  500

seq1  AGGGCCCTGTGACCTCTGGCAGCGAGCTGGAAGAAGGGAGGGCTCTGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCTGTGACCTCTGGCAGCGAGCTGGAAGAAGGGAGGGCTCTGGGC  550

seq1  ATCCCTGACTCCTCCCACTCTCTGAGCTCTGCTGAGGGGTTCTCTGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGACTCCTCCCACTCTCTGAGCTCTGCTGAGGGGTTCTCTGGCTG  600

seq1  ACTCAGGATCCATGGGGCCTAGGTTACACGAGCCTCTAGCTTCAATTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGATCCATGGGGCCTAGGTTACACGAGCCTCTAGCTTCAATTTGC  650

seq1  CTCACGTGAAATGGGAGCTTGGTACAGACACTCCTTAGGGTCCACCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGTGAAATGGGAGCTTGGTACAGACACTCCTTAGGGTCCACCTCTC  700

seq1  CTCTGACTATCTCCGACTCCACTCCAGCTGCCTGACTGGGATGAAGAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTATCTCCGACTCCACTCCAGCTGCCTGACTGGGATGAAGAACA  750

seq1  AGAATCCAGGGCCCAGGAAGTAGAAGAAACAAGCTATGGCTTTATGAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCAGGGCCCAGGAAGTAGAAGAAACAAGCTATGGCTTTATGAGGA  800

seq1  CATGGGGACAGCAGGGGCCATGGGAATTC  829
      |||||||||||||||||||||||||||||
seq2  CATGGGGACAGCAGGGGCCATGGGAATTC  829

seq1: chr17_71486732_71487099
seq2: B6Ng01-206E21.g_219_272 (reverse)

seq1  CACACACACCATGGCCCACACACACACATACCATGGTATGCACATATGCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCATGTTGCACACACATGCCATGGTACACACTCGTATACACATACACACA  100
                                            |||| |||| | 
seq2  --------------------------------------CACACACACCCC  12

seq1  CCATGGTGTACACACACATACATACATACATACATACACACATACAGAGA  150
      ||       ||||||||||| |||||   ||||||||||| |||||    
seq2  CC----CACACACACACATATATACACCAATACATACACATATACA----  54

seq1  GCATGCTGCAAACACACACACACCATGGTATATACACATACACCATGGTA  200
                                                        
seq2  --------------------------------------------------  54

seq1  TACCCTCATACATATATGCACACACCATGGTGCACACATATACACCATGG  250
                                                        
seq2  --------------------------------------------------  54

seq1  TATACACACACACACCATGGTGCATACATGCACACCATGGTACACACACA  300
                                                        
seq2  --------------------------------------------------  54

seq1  CCATGGTACACACATATACATATATTTATACACAAACACCATGAAACATA  350
                                                        
seq2  --------------------------------------------------  54

seq1  AATACATACACACATACA  368
                        
seq2  ------------------  54

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BAC

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Alignment Information