BAC Information

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BAC

Clone NameB6Ng01-207F19
Chromosome17 (Build37)
Map Location 25,896,704 - 26,058,392
singlet/doubletdoublet
Overlap geneNarfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160
Upstream gene4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln
Downstream genePigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207F19.bB6Ng01-207F19.g
ACCGA026534GA026535
length956540
definitionB6Ng01-207F19.b B6Ng01-207F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,896,704 - 25,897,652)(26,057,848 - 26,058,392)
sequence
gaattctcacaacatagtacctatttctcatggaagtacagcttgccctt
gtaattttatgttaaactcattaaggaacattgtaagctaggtgaggtgg
ctcatacttgtaatcctagctccaggaagcaagaggcaggagaatggcca
tgagcttaacacaagcctaaataaactacatagtaaattaagaaagaaaa
gaaactttgttgttgaagttgttgatacccaagaccattcagtgttggat
aacacagctacttcctgtttggagagtcccttgctctccagcagaacgaa
ggcacacctggcacacctgtcccattgtgaagcagctggcacgctccctg
ggaaggcaagttgggctattgttgagtatctatttctaacaaaaggtctc
aaactggtgaaggcaagaaatgcacagttgacttcaacaatttagaggca
ctggaacacatgaagaaactaaagaggacacttcccgattctcagcttgg
tagactcgcctccctcagccttttctctgcccacacatttttttttttcc
agcattgcctgaatcgtagcagcccagaccccgtcaggttccacggagtc
ggttctcacaccctggaaatgttcttgcttacagtgttactcttcagact
ccagtcacctcccaactcaggggacagagaatgacgcctccagtaaacag
gctacatagtctcctgacatctgtggattcctatgagccaagaaaaatca
ctagaaatctcttgcttcggcttactttgtttctttttttgtttctggaa
accatgtctgattttagcccaaactagccttgaacttgtgaccctcatat
ttcagcctccggagtttctctatatttacatatatgtgtagctatgtggg
ttccccgaagataacctacagtgtgcagtaccttcaagtaccatccacct
tgattt
agttgtgagttgccatgtgtgaattgaacccgggtcctctgcgtgcacac
atgcacacacacatgcacacacacacacacacacacacacacacacttta
tctattatctgacaatgttcaggaagtttgtgtaaaaactgttccaaggt
acagtatatgtgtgactgcagcatgtggaggtatgtggaggtcagaggat
aactttcagaagtcattgcagcctttccccctgttaaaatgggcttacac
caggccaggtagctcttgaactgctggacaaattctcctatctttacttc
ctttctttcttattataggagccggagctagatggagattacagatggtc
agtcaccggagggagatcgaactcatactgttaggcttacagtgcaagag
cgttggtcccaatctatgtttacggttttttttgttttttgtttggtttg
gtttggttttgggtttttgagacagggtttctctgtatcgccctggctgt
cctggaactcaccctgtagaccatgctggctttcgaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_25896704_25897652
seq2: B6Ng01-207F19.b_41_993

seq1  GAATTCTCACAACATAGTACCTATTTCTCATGGAAGTACAGCTTGCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACAACATAGTACCTATTTCTCATGGAAGTACAGCTTGCCCTT  50

seq1  GTAATTTTATGTTAAACTCATTAAGGAACATTGTAAGCTAGGTGAGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTATGTTAAACTCATTAAGGAACATTGTAAGCTAGGTGAGGTGG  100

seq1  CTCATACTTGTAATCCTAGCTCCAGGAAGCAAGAGGCAGGAGAATGGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACTTGTAATCCTAGCTCCAGGAAGCAAGAGGCAGGAGAATGGCCA  150

seq1  TGAGCTTAACACAAGCCTAAATAAACTACATAGTAAATTAAGAAAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTAACACAAGCCTAAATAAACTACATAGTAAATTAAGAAAGAAAA  200

seq1  GAAACTTTGTTGTTGAAGTTGTTGATACCCAAGACCATTCAGTGTTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTTGTTGTTGAAGTTGTTGATACCCAAGACCATTCAGTGTTGGAT  250

seq1  AACACAGCTACTTCCTGTTTGGAGAGTCCCTTGCTCTCCAGCAGAACGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGCTACTTCCTGTTTGGAGAGTCCCTTGCTCTCCAGCAGAACGAA  300

seq1  GGCACACCTGGCACACCTGTCCCATTGTGAAGCAGCTGGCACGCTCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACCTGGCACACCTGTCCCATTGTGAAGCAGCTGGCACGCTCCCTG  350

seq1  GGAAGGCAAGTTGGGCTATTGTTGAGTATCTATTTCTAACAAAAGGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAAGTTGGGCTATTGTTGAGTATCTATTTCTAACAAAAGGTCTC  400

seq1  AAACTGGTGAAGGCAAGAAATGCACAGTTGACTTCAACAATTTAGAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGTGAAGGCAAGAAATGCACAGTTGACTTCAACAATTTAGAGGCA  450

seq1  CTGGAACACATGAAGAAACTAAAGAGGACACTTCCCGATTCTCAGCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACACATGAAGAAACTAAAGAGGACACTTCCCGATTCTCAGCTTGG  500

seq1  TAGACTCGCCTCCCTCAGCCTTTTCTCTGCCCACACATTTTTTTTTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCGCCTCCCTCAGCCTTTTCTCTGCCCACACATTTTTTTTTTTCC  550

seq1  AGCATTGCCTGAATCGTAGCAGCCCAGACCCCGTCAGGTTCCACGGAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGCCTGAATCGTAGCAGCCCAGACCCCGTCAGGTTCCACGGAGTC  600

seq1  GGTTCTCACACCCTGGAAATGTTCTTGCTTACAGTGTTACTCTTCAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCACACCCTGGAAATGTTCTTGCTTACAGTGTTACTCTTCAGACT  650

seq1  CCAGTCACCTCCCAACTCAGGGGACAGAGAATGACGCCTCCAGTAAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCACCTCCCAACTCAGGGGACAGAGAATGACGCCTCCAGTAAACAG  700

seq1  GCTACATAGTCTCCTGACATCTGTGGATTCCTATGAGCCAAGAAAAATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATAGTCTCCTGACATCTGTGGATTCCTATGAGCCAAGAAAAATCA  750

seq1  CTAGAAATCTCTTGCTTCGGCTTACTTTGTTTC-TTTTTTGTTTCTGGAA  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTAGAAATCTCTTGCTTCGGCTTACTTTGTTTCTTTTTTTGTTTCTGGAA  800

seq1  ACCATGTCTGATTTTAGCCCAAACTAGCCTTGAACTTGTGACCCTCATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTCTGATTTTAGCCCAAACTAGCCTTGAACTTGTGACCCTCATAT  850

seq1  TTCAGCCTCCGGAG-TTCTCTATATTTACATATATGTGTAGCTATGTGGG  898
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTCAGCCTCCGGAGTTTCTCTATATTTACATATATGTGTAGCTATGTGGG  900

seq1  -TCCCCGAAGATAACCTACAGTGTGCAGTACC-TCAAGTACCATCCACCT  946
       ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTCCCCGAAGATAACCTACAGTGTGCAGTACCTTCAAGTACCATCCACCT  950

seq1  TGA  949
      |||
seq2  TGA  953

seq1: chr17_26057848_26058392
seq2: B6Ng01-207F19.g_66_611 (reverse)

seq1  GAGTTCG-AAGCCAGCCTGGTCTACAGGGTGAGTTCCAGGACAGCCAGGG  49
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  GAGTTCGAAAGCCAGCATGGTCTACAGGGTGAGTTCCAGGACAGCCAGGG  50

seq1  CTATACAGAGAAACCCTGTCTCAAAAACCCAAAACCAAACCAAACCAAAC  99
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATACAGAGAAACCCTGTCTCAAAAACCCAAAACCAAACCAAACCAAAC  100

seq1  AAAAAACAAAAAAAACCGTAAACATAGATTGGGACCAACGCTCTTGCACT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAAAAAACCGTAAACATAGATTGGGACCAACGCTCTTGCACT  150

seq1  GTAAGCCTAACAGTATGAGTTCGATCTCCCTCCGGTGACTGACCATCTGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCTAACAGTATGAGTTCGATCTCCCTCCGGTGACTGACCATCTGT  200

seq1  AATCTCCATCTAGCTCCGGCTCCTATAATAAGAAAGAAAGGAAGTAAAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCATCTAGCTCCGGCTCCTATAATAAGAAAGAAAGGAAGTAAAGA  250

seq1  TAGGAGAATTTGTCCAGCAGTTCAAGAGCTACCTGGCCTGGTGTAAGCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAATTTGTCCAGCAGTTCAAGAGCTACCTGGCCTGGTGTAAGCCC  300

seq1  ATTTTAACAGGGGGAAAGGCTGCAATGACTTCTGAAAGTTATCCTCTGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACAGGGGGAAAGGCTGCAATGACTTCTGAAAGTTATCCTCTGAC  350

seq1  CTCCACATACCTCCACATGCTGCAGTCACACATATACTGTACCTTGGAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATACCTCCACATGCTGCAGTCACACATATACTGTACCTTGGAAC  400

seq1  AGTTTTTACACAAACTTCCTGAACATTGTCAGATAATAGATAAAGTGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTACACAAACTTCCTGAACATTGTCAGATAATAGATAAAGTGTGT  450

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGCATGTGTGTGTGCATGTGTGCACGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGCATGTGTGTGTGCATGTGTGCACGC  500

seq1  AGAGGACCCGGGTTCAATTCACACATGGCAACTCACAACTGAATTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCCGGGTTCAATTCACACATGGCAACTCACAACTGAATTC  546