BAC Information

Click to search

BAC

Clone NameB6Ng01-207H13
Chromosome17 (Build37)
Map Location 52,460,477 - 52,605,462
singlet/doubletdoublet
Overlap geneLOC672987, EG328839
Upstream geneLOC100043451, LOC100043452, Satb1, EG628919
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207H13.bB6Ng01-207H13.g
ACCGA026612GA026613
length1,187967
definitionB6Ng01-207H13.b B6Ng01-207H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,604,291 - 52,605,462)(52,460,477 - 52,461,457)
sequence
gaattcaatagaattacctctcccatgtactaatagtttcttctgggagt
ggaagaaggaggctgacacaaaccatttccatcaccacagaaacctctgt
tgaaccatgttaacaccagccctgccacccaaacccagaaatagtatgaa
agaaaaaatgtgaaatgaaccatacattgaaaaacaatcaggtgcaggtt
ctacaggagctttaaactcaaagaaataccccacatctacctgcagtgtg
tgccaacctctggaaacaatgacagctcccactgctcctgtctacttgct
ttgttgttccccgccccctctcctgttttcaatatctttctgatgttcca
tatgtaatattgttacaggtgcaaaattgttcctttcaattcctgaatgg
ctgcacatgttgagcggtagcgccgaaggccagcacactattactgtgca
tccaggcctccctcccagtctgtgggtcaacagcattcttcattgcttgc
taatgctttattgtctcttagtatacattggaataataatggtaatttat
gcagatattttgtatgcatagcaaataatgagaaacacctgcagaaattt
ccctccttctctgagttcagcaactaattatatttttaaataatggctac
cattgaacacaattatccaaatcactttaagtaatggaatctttttaagg
tgtttttgaaatttttagcacagtttttaaacactcatttttatctagaa
gatgggaagggaaaaaaaggctagtaggcggcttcttactcacccgaatg
aacagtttctgccaagaatagattagtggcggatttttctctagtttcta
gtcttcatgttcgaggtcacagccagctaatggcaacaaggttttctgta
gtcatctttctgattctagctatttgctcgtcttatctccttcctctctt
aaagtgaaataaaaaataatggaagtgcttctgaaacccatttttacatg
gactttgccacctgaatttttcctccacggggattcaatacttgagtggt
gggacaagtaagaaaacagtcttagatctttttcttgtgacttgaattgt
cctttctattcattaagcctaagacaaaggctgttaagcactttgtaatg
gaatagagtaccaataagccatgaactccaacgtctt

gaattctttcataagggttttgaaagattttttttccagaatgtctgcat
cactgaacatctaaatttaacctgtgtatcacagttgaggaaccctgagt
gtcataaagggccaacccatgtttgagagcttaattggatactccgataa
tccaaatgcagttttctccatcacctgggagccggttagactttgaatct
atgacgaaactctgccatttaatagcaggtttgtgtataccttggttttg
gagaaccctgaaggtataagatcttgctggaatacacagagagtagccta
aagaagcctgccagttttgggtcattcaactgcacacatggactattaag
aactctggttggtcacaatttcaagaacaataacagatgtaaagcatcta
ttttttttttctttttgagcaggtagagttaccagagtgtgctcaagtta
atcacccatttaattataaacaaataaataaacataataattgtaccttg
agctaattcaacaagtagaggcacttgtgtggaaggcctatgacctgagt
tttgcccccgtattaggattgactcaactttggagagttgttttctgatc
ttcacatactctccctgccatgagtaccagcccacataggcacaaaacaa
ataaataaatttacatttaaaacattaaacccaaaaatggatgtgctttt
cttgaagtattcaactgtagagataagtgagtggctggaggcccacacca
ggagagggagtctacacctcacattgacaaggtagccaggaaccagaagt
tgtatagcccagatacctaggctagaaccaaatagacttaaaaaagtttg
tggggatcaatgaaataatctttatatattattatatatatattatatta
tataggtatttcctcgttacattttcatgctatcccaaaggttcctcata
cccacccccccaacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_52604291_52605462
seq2: B6Ng01-207H13.b_31_1217 (reverse)

seq1  AAGACGTTGGAAGTCATGGGTTTATGGTACTCTAT--CATTACAAAGGTG  48
      |||||||||||  |||||| ||  |||||||||||  ||||||||| |||
seq2  AAGACGTTGGAGTTCATGGCTTATTGGTACTCTATTCCATTACAAA-GTG  49

seq1  CT--ACAG-CTTTGTCTTAGCCTT-ATGAATAGAAGGGACAA-TCAAGTC  93
      ||  |||| ||||||||||| ||| |||||||||| |||||| |||||||
seq2  CTTAACAGCCTTTGTCTTAGGCTTAATGAATAGAAAGGACAATTCAAGTC  99

seq1  AC---AGAAAGATCTAAGACTGTTTTCTTAC-TGTCCCA-CACTCAAGTA  138
      ||   | |||||||||||||||||||||||| ||||||| ||||||||||
seq2  ACAAGAAAAAGATCTAAGACTGTTTTCTTACTTGTCCCACCACTCAAGTA  149

seq1  TTGAATCCCCGT-GAGGAAAA--TCAGGTGGCAAAGTCCATTGTAAAATG  185
      |||||||||||| ||||||||  ||||||||||||||||||   ||||||
seq2  TTGAATCCCCGTGGAGGAAAAATTCAGGTGGCAAAGTCCATGTAAAAATG  199

seq1  GGTTTCAG-AGCAACTCCATTATTTTTTATTTCACTTTAAGAGAGGAAGG  234
      |||||||| ||||  |||||||||||||||||||||||||||||||||||
seq2  GGTTTCAGAAGCACTTCCATTATTTTTTATTTCACTTTAAGAGAGGAAGG  249

seq1  AGATAAGACGAGCAAATAGCTAGAATCAGAAAGATGACTACAGAAAACCT  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGACGAGCAAATAGCTAGAATCAGAAAGATGACTACAGAAAACCT  299

seq1  TGTTGCCATTAGCTGGCTGTGACCTCGAACATGAAGACTAGAAACTAGAG  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCATTAGCTGGCTGTGACCTCGAACATGAAGACTAGAAACTAGAG  349

seq1  AAAAATCCGCCACTAATCTATTCTTGGCAGAAACTGTTCATTCGGGTGAG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCGCCACTAATCTATTCTTGGCAGAAACTGTTCATTCGGGTGAG  399

seq1  TAAGAAGCCGCCTACTAGCCTTTTTTTCCCTTCCCATCTTCTAGATAAAA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGCCGCCTACTAGCCTTTTTTTCCCTTCCCATCTTCTAGATAAAA  449

seq1  ATGAGTGTTTAAAAACTGTGCTAAAAATTTCAAAAACACCTTAAAAAGAT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGTTTAAAAACTGTGCTAAAAATTTCAAAAACACCTTAAAAAGAT  499

seq1  TCCATTACTTAAAGTGATTTGGATAATTGTGTTCAATGGTAGCCATTATT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTACTTAAAGTGATTTGGATAATTGTGTTCAATGGTAGCCATTATT  549

seq1  TAAAAATATAATTAGTTGCTGAACTCAGAGAAGGAGGGAAATTTCTGCAG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATAATTAGTTGCTGAACTCAGAGAAGGAGGGAAATTTCTGCAG  599

seq1  GTGTTTCTCATTATTTGCTATGCATACAAAATATCTGCATAAATTACCAT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTCATTATTTGCTATGCATACAAAATATCTGCATAAATTACCAT  649

seq1  TATTATTCCAATGTATACTAAGAGACAATAAAGCATTAGCAAGCAATGAA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTCCAATGTATACTAAGAGACAATAAAGCATTAGCAAGCAATGAA  699

seq1  GAATGCTGTTGACCCACAGACTGGGAGGGAGGCCTGGATGCACAGTAATA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTGTTGACCCACAGACTGGGAGGGAGGCCTGGATGCACAGTAATA  749

seq1  GTGTGCTGGCCTTCGGCGCTACCGCTCAACATGTGCAGCCATTCAGGAAT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTGGCCTTCGGCGCTACCGCTCAACATGTGCAGCCATTCAGGAAT  799

seq1  TGAAAGGAACAATTTTGCACCTGTAACAATATTACATATGGAACATCAGA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGAACAATTTTGCACCTGTAACAATATTACATATGGAACATCAGA  849

seq1  AAGATATTGAAAACAGGAGAGGGGGCGGGGAACAACAAAGCAAGTAGACA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTGAAAACAGGAGAGGGGGCGGGGAACAACAAAGCAAGTAGACA  899

seq1  GGAGCAGTGGGAGCTGTCATTGTTTCCAGAGGTTGGCACACACTGCAGGT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGTGGGAGCTGTCATTGTTTCCAGAGGTTGGCACACACTGCAGGT  949

seq1  AGATGTGGGGTATTTCTTTGAGTTTAAAGCTCCTGTAGAACCTGCACCTG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGGGTATTTCTTTGAGTTTAAAGCTCCTGTAGAACCTGCACCTG  999

seq1  ATTGTTTTTCAATGTATGGTTCATTTCACATTTTTTCTTTCATACTATTT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTTCAATGTATGGTTCATTTCACATTTTTTCTTTCATACTATTT  1049

seq1  CTGGGTTTGGGTGGCAGGGCTGGTGTTAACATGGTTCAACAGAGGTTTCT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTGGGTGGCAGGGCTGGTGTTAACATGGTTCAACAGAGGTTTCT  1099

seq1  GTGGTGATGGAAATGGTTTGTGTCAGCCTCCTTCTTCCACTCCCAGAAGA  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGATGGAAATGGTTTGTGTCAGCCTCCTTCTTCCACTCCCAGAAGA  1149

seq1  AACTATTAGTACATGGGAGAGGTAATTCTATTGAATTC  1172
      ||||||||||||||||||||||||||||||||||||||
seq2  AACTATTAGTACATGGGAGAGGTAATTCTATTGAATTC  1187


seq1: chr17_52460477_52461457
seq2: B6Ng01-207H13.g_62_1028

seq1  GAATTCTTTCATAAGGGTTTTGAAAGATTTTTTTTCCAGAATGTCTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATAAGGGTTTTGAAAGATTTTTTTTCCAGAATGTCTGCAT  50

seq1  CACTGAACATCTAAATTTAACCTGTGTATCACAGTTGAGGAACCCTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACATCTAAATTTAACCTGTGTATCACAGTTGAGGAACCCTGAGT  100

seq1  GTCATAAAGGGCCAACCCATGTTTGAGAGCTTAATTGGATACTCCGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAAAGGGCCAACCCATGTTTGAGAGCTTAATTGGATACTCCGATAA  150

seq1  TCCAAATGCAGTTTTCTCCATCACCTGGGAGCCGGTTAGACTTTGAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGCAGTTTTCTCCATCACCTGGGAGCCGGTTAGACTTTGAATCT  200

seq1  ATGACGAAACTCTGCCATTTAATAGCAGGTTTGTGTATACCTTGGTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGAAACTCTGCCATTTAATAGCAGGTTTGTGTATACCTTGGTTTTG  250

seq1  GAGAACCCTGAAGGTATAAGATCTTGCTGGAATACACAGAGAGTAGCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCCTGAAGGTATAAGATCTTGCTGGAATACACAGAGAGTAGCCTA  300

seq1  AAGAAGCCTGCCAGTTTTGGGTCATTCAACTGCACACATGGACTATTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCCTGCCAGTTTTGGGTCATTCAACTGCACACATGGACTATTAAG  350

seq1  AACTCTGGTTGGTCACAATTTCAAGAACAATAACAGATGTAAAGCATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGGTTGGTCACAATTTCAAGAACAATAACAGATGTAAAGCATCTA  400

seq1  TTTTTTTTTTCTTTTTGAGCAGGTAGAGTTACCAGAGTGTGCTCAAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCTTTTTGAGCAGGTAGAGTTACCAGAGTGTGCTCAAGTTA  450

seq1  ATCACCCATTTAATTATAAACAAATAAATAAACATAATAATTGTACCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCATTTAATTATAAACAAATAAATAAACATAATAATTGTACCTTG  500

seq1  AGCTAATTCAACAAGTAGAGGCACTTGTGTGGAAGGCCTATGACCTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATTCAACAAGTAGAGGCACTTGTGTGGAAGGCCTATGACCTGAGT  550

seq1  TTTGCCCCCGTATTAGGATTGACTCAACTTTGGAGAGTTGTTTTCTGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCCCGTATTAGGATTGACTCAACTTTGGAGAGTTGTTTTCTGATC  600

seq1  TTCACATACTCTCCCTGCCATGAGTACCAGCCCACATAGGCACAAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATACTCTCCCTGCCATGAGTACCAGCCCACATAGGCACAAAACAA  650

seq1  ATAAATAAATTTACATTTAAAACATTAAACCCAAAAATGGATGTGCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATTTACATTTAAAACATTAAACCCAAAAATGGATGTGCTTTT  700

seq1  CTTGAAGTATTCAACTGTAGAGATAAGTGAGTGGCTGGAGGCCCACACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGTATTCAACTGTAGAGATAAGTGAGTGGCTGGAGGCCCACACCA  750

seq1  GGAGAGGGAGTCTACACCTCACATTGACAAGGTAGCCAGGAACCAGAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGAGTCTACACCTCACATTGACAAGGTAGCCAGGAACCAGAAGT  800

seq1  TGTATAGCCCAGATACCTAGGCTAGAACCAAATAGACTTAAAAAAGTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGCCCAGATACCTAGGCTAGAACCAAATAGACTTAAAAAAGTTTG  850

seq1  TGGGGATCAATGAAATAATTCTTTATTATTATTATTATTATTATTATTAT  900
      |||||||||||||||||| |||||||      |||||||| |||   |||
seq2  TGGGGATCAATGAAATAA-TCTTTAT-----ATATTATTA-TATATATAT  893

seq1  TATTATTATTATTAGGTATTTTCCTCGTTTACATTTTCAATGCTATCCCA  950
      || ||||||   |||||| |||||||| |||||||||| |||||||||||
seq2  TA-TATTAT--ATAGGTA-TTTCCTCG-TTACATTTTC-ATGCTATCCCA  937

seq1  AAGGTCCCTCATACCCACCCCCCCCAACCCC  981
      ||||| ||||||||||| |||||||||||||
seq2  AAGGTTCCTCATACCCA-CCCCCCCAACCCC  967


| Home | SequenceCutter | Blast | Download |