BAC Information

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BAC

Clone NameB6Ng01-208H04
Chromosome17 (Build37)
Map Location 20,131,876 - 20,250,489
singlet/doubletdoublet
Overlap geneEG627664, V2r7, LOC100041856, EG545190, Fpr-rs7
Upstream geneEG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534
Downstream geneFpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208H04.bB6Ng01-208H04.g
ACCGA027328GA027329
length1,1661,115
definitionB6Ng01-208H04.b B6Ng01-208H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,131,876 - 20,132,892)(20,249,367 - 20,250,489)
sequence
gaattcacaatagaggaatatctaatggataaaaagcatttaagaactaa
agtccttagtggtcagtgaaatggaaatcaaaatgacatagagcttccac
cttacaccaattagaatggctgaagtcaaaactcaggtgagagtatatgc
tgtcaatgatggagagaaagtgaaacaatcctctattgcttttggggttg
caaactggtacaaccactcttgaaatcattctggcagttcctcagaaaat
tggaaatagacctattttaagatgcagctataccacttttggacatattc
cccccaaaatgccccatcatatcacagggaaaaatgctagaatatgttca
tagtggccccatttctaagagcaaaatctggaagcaacccaaataaccta
caacagaagaatggttacagagtatatggcatatttgcacaacagaatat
tattaggttattaagatcaggggcaccattgcttttgaaagaaaatgaat
ggagctataaaatacaatcctgagtgaggtaacacagaccaaaagaacat
acatcatatgtagtcactaataatttgatattagccaaaaatcacagagt
acctaggacaccacccacagagtttaagaacttctacaaagcatatgggc
caaaacagggtctggtgaagtattgagataaggaactcaaagttcagacc
atggctggattgtaaatgtataaatgaattctttaaatgtggtgtgtgtt
tctagatttagagtttttattcatttccattatagagggaagcataaaag
gagtcagggatagatcacattggaacacaagttaaatgcttaaatcctga
tctgaaggcagaagcacaaaataaaacgaaacaaacaaacaaacaaaaaa
caaaaaaaaaagagacagatgtctcagggactttttaatcctaaagccag
cccctagcactacacctccccctaaaaggccaaaacctctaacctttcct
aatgggtccagtaataaaatgaatgtctctaaactattaacccaagagac
ccagaaagttagcagatattcagtgtacagaagactacaaaataatactg
ctctgaaccacaaagaaagtgatcccattatcattaacacatgaacaaga
atctgtagatgcatga
gaattccagtcgtcctttacgtgtcctcactgctgtagcattttctttct
ttgtctgttggttcccttttcaattgatttttcttttaggcaatattggg
aacaaggagacacagaataatattgacgcgtgggtgaacccagcaagcac
tctggcctccttcaatagttgcctcaacccaatactctatgttttcctag
gtcagcaattcagagagagactgatctactccctatcagctagtctggag
agggccctgagggaggattcagccctgaacagtgacaaaatcagaaactt
gtcttcacaaacttaagactctgagacataggacctgagaggtgtggtgt
catggaaatgtttcctgtgccaccctattctcacttcccatctcatccta
ctttgcataagatttttgacttttaatctagaattctagaagaaatattt
cagtatcctctgatttggaggaaaaataaaaattgaaaaaaaaaattctt
tctttgggattttttaactgagtctggaacatgagctatcactaaggtgg
cacaacagtacaagacacaaaacaaatctatattttttacagcagttgaa
gtgggaaaatgtccttattgtgtgtggggccaatccttaggcagaggatt
tcaaaatggtatctggctctgataacattgtttacaatgatttctgtttt
tgagtgtggagataatgtgataaacttatttcaagttcctgttgccctga
cttctttacattatagactataagacataattactattcaaaaatccttt
tatcttttaagttacatttgtaaagggtattttatattttaatagcagga
aagcaatctcaaataaaccgatatcaagaccatgtctttgctgtgacata
tctgttgaatgtacttttcgtccatgtataatagattctggaggaaagat
aatccctttagaatcatgtgatgggacaaattgaaaatcaatgaattgtc
ttcaaagaggagatagtagaaaatagatcaatggggggtatatcagagta
tagcacataatatggtgggtagattaaacatagtaagctacatgacatca
atgtactcatatgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_20131876_20132892
seq2: B6Ng01-208H04.b_200_1211

seq1  AATGATGGAGAGAAAGTGAAACAATCCTCTATTGCTTTTGGGGTTGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGAGAGAAAGTGAAACAATCCTCTATTGCTTTTGGGGTTGCAAA  50

seq1  CTGGTACAACCACTCTTGAAATCATTCTGGCAGTTCCTCAGAAAATTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACAACCACTCTTGAAATCATTCTGGCAGTTCCTCAGAAAATTGGA  100

seq1  AATAGACCTATTTTAAGATGCAGCTATACCACTTTTGGACATATTCCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACCTATTTTAAGATGCAGCTATACCACTTTTGGACATATTCCCCC  150

seq1  CAAAATGCCCCATCATATCACAGGGAAAAATGCTAGAATATGTTCATAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGCCCCATCATATCACAGGGAAAAATGCTAGAATATGTTCATAGT  200

seq1  GGCCCCATTTCTAAGAGCAAAATCTGGAAGCAACCCAAATAACCTACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCATTTCTAAGAGCAAAATCTGGAAGCAACCCAAATAACCTACAAC  250

seq1  AGAAGAATGGTTACAGAGTATATGGCATATTTGCACAACAGAATATTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATGGTTACAGAGTATATGGCATATTTGCACAACAGAATATTATT  300

seq1  AGGTTATTAAGATCAGGGGCACCATTGCTTTTGAAAGAAAATGAATGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATTAAGATCAGGGGCACCATTGCTTTTGAAAGAAAATGAATGGAG  350

seq1  CTATAAAATACAATCCTGAGTGAGGTAACACAGACCAAAAGAACATACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAATACAATCCTGAGTGAGGTAACACAGACCAAAAGAACATACAT  400

seq1  CATATGTAGTCACTAATAATTTGATATTAGCCAAAAATCACAGAGTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTAGTCACTAATAATTTGATATTAGCCAAAAATCACAGAGTACCT  450

seq1  AGGACACCACCCACAGAGTTTAAGAACTTCTACAAAGCATATGGGCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACCACCCACAGAGTTTAAGAACTTCTACAAAGCATATGGGCCAAA  500

seq1  ACAGGGTCTGGTGAAGTATTGAGATAAGGAACTCAAAGTTCAGACCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTCTGGTGAAGTATTGAGATAAGGAACTCAAAGTTCAGACCATGG  550

seq1  CTGGATTGTAAATGTATAAATGAATTCTTTAAATGTGGTGTGTGTTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTGTAAATGTATAAATGAATTCTTTAAATGTGGTGTGTGTTTCTA  600

seq1  GATTTAGAGTTTTTATTCATTTCCATTATAGAGGGAAGCATAAAAGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGAGTTTTTATTCATTTCCATTATAGAGGGAAGCATAAAAGGAGT  650

seq1  CAGGGATAGATCACATTGGAACACAAGTTAAATGCTTAAATCCTGATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATAGATCACATTGGAACACAAGTTAAATGCTTAAATCCTGATCTG  700

seq1  AAGGCAGAAGCACAAAATAAAACGAAACAAAACAAACAAACAAAAAACAA  750
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGGCAGAAGCACAAAATAAAACGAAAC-AAACAAACAAACAAAAAACAA  749

seq1  AAAAAAAAGAGAACAGATGTCTCAGGGACTTTTTAATCCTAAAGCCAGCC  800
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAG-ACAGATGTCTCAGGGACTTTTTAATCCTAAAGCCAGCC  798

seq1  CCTAGCACTACACCTCCCCCTAAAAGGCCAAAACCTCTAACCTTTCCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACTACACCTCCCCCTAAAAGGCCAAAACCTCTAACCTTTCCTAA  848

seq1  TGGGTCCAGTAATAAAATGAATGTTCTCTAAAACTA-TAACCCAAGAGAA  899
      ||||||||||||||||||||||| ||||| |||||| ||||||||||| |
seq2  TGGGTCCAGTAATAAAATGAATG-TCTCT-AAACTATTAACCCAAGAG-A  895

seq1  CCCAGAAAGTTAGCAAGATATTCAGTGTACAGAAGACTACAAAATAATAC  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCAGAAAGTTAGC-AGATATTCAGTGTACAGAAGACTACAAAATAATAC  944

seq1  TGTCTTCTGAA-CACAAAGAAAGTGTTCCCATAATTCATAACACATG-AC  997
      ||   |||||| ||||||||||||| |||||| ||   ||||||||| ||
seq2  TG--CTCTGAACCACAAAGAAAGTGATCCCATTATCATTAACACATGAAC  992

seq1  AAG-ATCTGTTAGATGCATGA  1017
      ||| ||||| |||||||||||
seq2  AAGAATCTG-TAGATGCATGA  1012

seq1: chr17_20249367_20250489
seq2: B6Ng01-208H04.g_66_1180 (reverse)

seq1  GACATATGAGTACATGGATTTTTCATGTAGCCTTAATTATGTTTAAATCT  50
      ||||||||||||||| ||  | |||||||||  | | ||||||| |||||
seq2  GACATATGAGTACATTGA--TGTCATGTAGC--TTACTATGTTT-AATCT  45

seq1  ACCCACCATA-TATGTGCTTATACTCCTGATATTACCCCCCATTTGATCT  99
      |||||||||| ||||||| |||||| |||||| ||||||||| |||||||
seq2  ACCCACCATATTATGTGC-TATACT-CTGATA-TACCCCCCA-TTGATCT  91

seq1  ATTTTCTACTATCCTCTTCTTTGAAGAC-ATTCATTGATTTTCAATTTTG  148
      |||||||||||| ||| ||||||||||| |||||||||||||||| ||||
seq2  ATTTTCTACTAT-CTCCTCTTTGAAGACAATTCATTGATTTTCAA-TTTG  139

seq1  TCCCATCACATGATTCTAAAGGGATTATCTTTCCTCCAGAATCTATTATA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCACATGATTCTAAAGGGATTATCTTTCCTCCAGAATCTATTATA  189

seq1  CATGGACGAAAAGTACATTCAACAGATATGTCACAGCAAAGACATGGTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACGAAAAGTACATTCAACAGATATGTCACAGCAAAGACATGGTCT  239

seq1  TGATATCGGTTTATTTGAGATTGCTTTCCTGCTATTAAAATATAAAATAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCGGTTTATTTGAGATTGCTTTCCTGCTATTAAAATATAAAATAC  289

seq1  CC-TTACAAATGTAACTTAAAAGATAAAAGGATTTTTGAATAGTAATTAT  347
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACAAATGTAACTTAAAAGATAAAAGGATTTTTGAATAGTAATTAT  339

seq1  GTCTTATAGTCTATAATGTAAAGAAGTCAGGGCAACAGGAACTTGAAATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATAGTCTATAATGTAAAGAAGTCAGGGCAACAGGAACTTGAAATA  389

seq1  AGTTTATCACATTATCTCCACACTCAAAAACAGAAATCATTGTAAACAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATCACATTATCTCCACACTCAAAAACAGAAATCATTGTAAACAAT  439

seq1  GTTATCAGAGCCAGATACCATTTTGAAATCCTCTGCCTAAGGATTGGCCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCAGAGCCAGATACCATTTTGAAATCCTCTGCCTAAGGATTGGCCC  489

seq1  CACACACAATAAGGACATTTTCCCACTTCAACTGCTGTAAAAAATATAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAATAAGGACATTTTCCCACTTCAACTGCTGTAAAAAATATAGA  539

seq1  TTTGTTTTGTGTCTTGTACTGTTGTGCCACCTTAGTGATAGCTCATGTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTGTCTTGTACTGTTGTGCCACCTTAGTGATAGCTCATGTTC  589

seq1  CAGACTCAGTTAAAAAATCCCAAAGAAAGAATTTTTTTTTTCAATTTTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCAGTTAAAAAATCCCAAAGAAAGAATTTTTTTTTTCAATTTTTA  639

seq1  TTTTTCCTCCAAATCAGAGGATACTGAAATATTTCTTCTAGAATTCTAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCCAAATCAGAGGATACTGAAATATTTCTTCTAGAATTCTAGA  689

seq1  TTAAAAGTCAAAAATCTTATGCAAAGTAGGATGAGATGGGAAGTGAGAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTCAAAAATCTTATGCAAAGTAGGATGAGATGGGAAGTGAGAAT  739

seq1  AGGGTGGCACAGGAAACATTTCCATGACACCACACCTCTCAGGTCCTATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGCACAGGAAACATTTCCATGACACCACACCTCTCAGGTCCTATG  789

seq1  TCTCAGAGTCTTAAGTTTGTGAAGACAAGTTTCTGATTTTGTCACTGTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGTCTTAAGTTTGTGAAGACAAGTTTCTGATTTTGTCACTGTTC  839

seq1  AGGGCTGAATCCTCCCTCAGGGCCCTCTCCAGACTAGCTGATAGGGAGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGAATCCTCCCTCAGGGCCCTCTCCAGACTAGCTGATAGGGAGTA  889

seq1  GATCAGTCTCTCTCTGAATTGCTGACCTAGGAAAACATAGAGTATTGGGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTCTCTCTCTGAATTGCTGACCTAGGAAAACATAGAGTATTGGGT  939

seq1  TGAGGCAACTATTGAAGGAGGCCAGAGTGCTTGCTGGGTTCACCCACGCG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAACTATTGAAGGAGGCCAGAGTGCTTGCTGGGTTCACCCACGCG  989

seq1  TCAATATTATTCTGTGTCTCCTTGTTCCCAATATTGCCTAAAAGAAAAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTATTCTGTGTCTCCTTGTTCCCAATATTGCCTAAAAGAAAAAT  1039

seq1  CAATTGAAAAGGGAACCAACAGACAAAGAAAGAAAATGCTACAGCAGTGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGAAAAGGGAACCAACAGACAAAGAAAGAAAATGCTACAGCAGTGA  1089

seq1  GGACACGTAAAGGACGACTGGAATTC  1123
      ||||||||||||||||||||||||||
seq2  GGACACGTAAAGGACGACTGGAATTC  1115