BAC Information

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BAC

Clone NameB6Ng01-209H14
Chromosome17 (Build37)
Map Location 91,056,126 - 91,204,637
singlet/doubletdoublet
Overlap geneNrxn1
Upstream geneLOC100043906
Downstream geneEG668871, LOC668872, LOC627235, LOC100043741, LOC100043742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209H14.bB6Ng01-209H14.g
ACCGA028082GA028083
length1,0531,134
definitionB6Ng01-209H14.b B6Ng01-209H14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,203,595 - 91,204,637)(91,056,126 - 91,057,266)
sequence
gaattctcttatttttgctttgtctctttctgagtattatttggctagct
aatacttattgttaagtaaacactactttattatagtcagtaccttcagt
ggtgaggagactatctcaaaacgtttggatcctggtgtcagagggcctta
aagtatatgtgcaagtacgaaagttcagaactttcaatctcagaatgttt
gtgtttgccaatcagtgggtttgatttaattggggaggagactccaggat
aaaaggattccagttatattcacaggctctttacttcttgcttcatagag
agtgccctatggacaattagcatgaataaaatacagaatgtgtggaaata
aagagatacactgagaaacataggtatcccctgctttatgctaatgctgt
ttaaacactctagacaaaatatataaattactctataccaaacttaaata
tcaccaatatgtaaacattcatcatagggtgagggcactgggaaaatcag
agttcccctatcaatagggcagtgaggacagttttgatcttgttttaatt
aatattgaatttttgtgtcagtttaacacaggcaaggagacacagttatg
ccctgagtgcagtaaggcatactattcacagattttgacagacagaagga
gtaattttagtggtaggagttaatttgcactggtattaatgcatgaaaag
gttggtgattatatctaattgttgccttcatagtagctcaatgaaaaata
aaggctcatgaaccaaagctgtgggaagttttggattatgatggcctcta
caaagatgtattattaaactcacttttttttttcataatcaggttctgat
cctgaatttaccttttgtatccatctttgtttttcctctgctttcatgct
ttcaaccctcctacataaaatattaaaacagatgtagaaaagggtgggga
aattgattaactttcctaacactttttgaaaactattttttaaaaaattc
agcattatcatcttaatggattattacttgtgaatagattacatatatta
atg

gaattccattcccagtattcatgttggatggctcacattcatccataact
cctgttccaatgacatcctctggcctctgaagtaacctgcactaagatac
acacacatactcactaacattcatgttcatgccagcacagaactgaaaag
aaaataaatctcttaaaaggtgagaacaactttgcttcttgggaaaacat
tttttcagaaaaagcaaagacgtaggatgtagttgaaagcagaatattca
ggacaaaagcacaaggtcaaaatatccagataactcaaaatatccaaggg
tttgagtctatataaaatggagggtgtttccatatcactcacagcaagct
tgataatgttaatgacattaggtgaactgggaatgatcacgttatttagg
aaaatgtcttacaaatatgatctatttaacaaaccagtcttcacttccca
tttttagcatattgttttgtattatgtattggaaaatgttgtttaaaatc
tattaggtgacttatgcaagagtcctcacacttagctagctatagcattc
tctgtttcactcaatggttaagctacagaaagcagctctgagctttgcaa
atgcactgacatgttccaccaaacattttaattatttgactatagttctg
aatcctccagactggggcaaaacaaccaaagcatttgtaacatgtagccc
tattctccttatataacactattactgcatatttattttaagacaaactt
gcaagctgaaacccttgacaatattcggagtatcctgaatcaagttaaac
aaagactgctagggatcatagacaggcattctctgtggcctgatccacct
tggatccaggagggctgtgtgcctgaagatctaatgtatgctacctagat
aaaaatcttttcttggaaattctggattagacagttatgaattataatat
ttttgtgaaaaaaattgggaaccatgtggcatagacagtttgataaccca
ggtctagttttaaagctcaaccagtgtgtacatttgggggtagacaggga
tattttttcagaggaattgcagtagatttcagaagctatgttcttaaaga
ataatgaacaagaagaatgtctctagagagatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_91203595_91204637
seq2: B6Ng01-209H14.b_44_1096 (reverse)

seq1  CATTAATATATGTGATCTATTCACATGTAATAAT-CAATAAGATGGTTAA  49
      ||||||||||||| ||||||||||| |||||||| || |||||| | |||
seq2  CATTAATATATGTAATCTATTCACAAGTAATAATCCATTAAGAT-GATAA  49

seq1  TGCTGAA-TTTTTAAAAATAAGTTTTC-AAAAGTGTTAGG-AAGTT-ATC  95
      ||||||| ||||||||||  ||||||| |||||||||||| ||||| |||
seq2  TGCTGAATTTTTTAAAAAATAGTTTTCAAAAAGTGTTAGGAAAGTTAATC  99

seq1  AATTTCCCCACC--TTTCTACATCTGTTTTAATATTTTATGTAGGAGGGT  143
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCCACCCTTTTCTACATCTGTTTTAATATTTTATGTAGGAGGGT  149

seq1  TGAAAGCATGAAAGCAGAGGAAAAACAAAGATGGATAC-AAAGGTAAATT  192
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGAAAGCATGAAAGCAGAGGAAAAACAAAGATGGATACAAAAGGTAAATT  199

seq1  CAGGATCAGAACCTGATTATG-AAAAAAAAAGTGAGTTTAATAATACATC  241
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAGGATCAGAACCTGATTATGAAAAAAAAAAGTGAGTTTAATAATACATC  249

seq1  TTTGTAGAGGCCATCATAATCCAAAACTTCCCACAGC-TTGGTTCATGAG  290
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTGTAGAGGCCATCATAATCCAAAACTTCCCACAGCTTTGGTTCATGAG  299

seq1  CC-TTATTTTTCATTGAGCTACTATGAAGGCAACAATTAGATATAATCAC  339
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTTTTCATTGAGCTACTATGAAGGCAACAATTAGATATAATCAC  349

seq1  CAACCTTTTCATGCATTAATACCAGTGCAAATTAACTCCTACCACTAAAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTTTCATGCATTAATACCAGTGCAAATTAACTCCTACCACTAAAA  399

seq1  TTACTCCTTCTGTCTGTCAAAATCTGTGAATAGTATGCCTTACTGCACTC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCTTCTGTCTGTCAAAATCTGTGAATAGTATGCCTTACTGCACTC  449

seq1  AGGGCATAACTGTGTCTCCTTGCCTGTGTTAAACTGACACAAAAATTCAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATAACTGTGTCTCCTTGCCTGTGTTAAACTGACACAAAAATTCAA  499

seq1  TATTAATTAAAACAAGATCAAAACTGTCCTCACTGCCCTATTGATAGGGG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTAAAACAAGATCAAAACTGTCCTCACTGCCCTATTGATAGGGG  549

seq1  AACTCTGATTTTCCCAGTGCCCTCACCCTATGATGAATGTTTACATATTG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGATTTTCCCAGTGCCCTCACCCTATGATGAATGTTTACATATTG  599

seq1  GTGATATTTAAGTTTGGTATAGAGTAATTTATATATTTTGTCTAGAGTGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATTTAAGTTTGGTATAGAGTAATTTATATATTTTGTCTAGAGTGT  649

seq1  TTAAACAGCATTAGCATAAAGCAGGGGATACCTATGTTTCTCAGTGTATC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAGCATTAGCATAAAGCAGGGGATACCTATGTTTCTCAGTGTATC  699

seq1  TCTTTATTTCCACACATTCTGTATTTTATTCATGCTAATTGTCCATAGGG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTTCCACACATTCTGTATTTTATTCATGCTAATTGTCCATAGGG  749

seq1  CACTCTCTATGAAGCAAGAAGTAAAGAGCCTGTGAATATAACTGGAATCC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTATGAAGCAAGAAGTAAAGAGCCTGTGAATATAACTGGAATCC  799

seq1  TTTTATCCTGGAGTCTCCTCCCCAATTAAATCAAACCCACTGATTGGCAA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCTGGAGTCTCCTCCCCAATTAAATCAAACCCACTGATTGGCAA  849

seq1  ACACAAACATTCTGAGATTGAAAGTTCTGAACTTTCGTACTTGCACATAT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACATTCTGAGATTGAAAGTTCTGAACTTTCGTACTTGCACATAT  899

seq1  ACTTTAAGGCCCTCTGACACCAGGATCCAAACGTTTTGAGATAGTCTCCT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAGGCCCTCTGACACCAGGATCCAAACGTTTTGAGATAGTCTCCT  949

seq1  CACCACTGAAGGTACTGACTATAATAAAGTAGTGTTTACTTAACAATAAG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGAAGGTACTGACTATAATAAAGTAGTGTTTACTTAACAATAAG  999

seq1  TATTAGCTAGCCAAATAATACTCAGAAAGAGACAAAGCAAAAATAAGAGA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCTAGCCAAATAATACTCAGAAAGAGACAAAGCAAAAATAAGAGA  1049

seq1  ATTC  1043
      ||||
seq2  ATTC  1053


seq1: chr17_91056126_91057266
seq2: B6Ng01-209H14.g_63_1196

seq1  GAATTCCATTCCCAGTATTCATGTTGGATGGCTCACATTCATCCATAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCCCAGTATTCATGTTGGATGGCTCACATTCATCCATAACT  50

seq1  CCTGTTCCAATGACATCCTCTGGCCTCTGAAGTAACCTGCACTAAGATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCCAATGACATCCTCTGGCCTCTGAAGTAACCTGCACTAAGATAC  100

seq1  ACACACATACTCACTAACATTCATGTTCATGCCAGCACAGAACTGAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATACTCACTAACATTCATGTTCATGCCAGCACAGAACTGAAAAG  150

seq1  AAAATAAATCTCTTAAAAGGTGAGAACAACTTTGCTTCTTGGGAAAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATCTCTTAAAAGGTGAGAACAACTTTGCTTCTTGGGAAAACAT  200

seq1  TTTTTCAGAAAAAGCAAAGACGTAGGATGTAGTTGAAAGCAGAATATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGAAAAAGCAAAGACGTAGGATGTAGTTGAAAGCAGAATATTCA  250

seq1  GGACAAAAGCACAAGGTCAAAATATCCAGATAACTCAAAATATCCAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAAGCACAAGGTCAAAATATCCAGATAACTCAAAATATCCAAGGG  300

seq1  TTTGAGTCTATATAAAATGGAGGGTGTTTCCATATCACTCACAGCAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTCTATATAAAATGGAGGGTGTTTCCATATCACTCACAGCAAGCT  350

seq1  TGATAATGTTAATGACATTAGGTGAACTGGGAATGATCACGTTATTTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGTTAATGACATTAGGTGAACTGGGAATGATCACGTTATTTAGG  400

seq1  AAAATGTCTTACAAATATGATCTATTTAACAAACCAGTCTTCACTTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCTTACAAATATGATCTATTTAACAAACCAGTCTTCACTTCCCA  450

seq1  TTTTTAGCATATTGTTTTGTATTATGTATTGGAAAATGTTGTTTAAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGCATATTGTTTTGTATTATGTATTGGAAAATGTTGTTTAAAATC  500

seq1  TATTAGGTGACTTATGCAAGAGTCCTCACACTTAGCTAGCTATAGCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGTGACTTATGCAAGAGTCCTCACACTTAGCTAGCTATAGCATTC  550

seq1  TCTGTTTCACTCAATGGTTAAGCTACAGAAAGCAGCTCTGAGCTTTGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCACTCAATGGTTAAGCTACAGAAAGCAGCTCTGAGCTTTGCAA  600

seq1  ATGCACTGACATGTTCCACCAAACATTTTAATTATTTGACTATAGTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTGACATGTTCCACCAAACATTTTAATTATTTGACTATAGTTCTG  650

seq1  AATCCTCCAGACTGGGGCAAAACAACCAAAGCATTTGTAACATGTAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCCAGACTGGGGCAAAACAACCAAAGCATTTGTAACATGTAGCCC  700

seq1  TATTCTCCTTATATAACACTATTACTGCATATTTATTTTAAGACAAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCCTTATATAACACTATTACTGCATATTTATTTTAAGACAAACTT  750

seq1  GCAAGCTGAAACCCTTGACAATATTCGGAGTATCCTGAATCAAGTTAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTGAAACCCTTGACAATATTCGGAGTATCCTGAATCAAGTTAAAC  800

seq1  AAAGACTGCTAGGGATCATAGACAGGCATTCTCTGTGGCCTGATCCACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGCTAGGGATCATAGACAGGCATTCTCTGTGGCCTGATCCACCT  850

seq1  TGGATCCAGGAGGGCTGTGTGCCTGAAGATCTAATGTATGCTACCTAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCAGGAGGGCTGTGTGCCTGAAGATCTAATGTATGCTACCTAGAT  900

seq1  AAAAATCTTTTCTTGGAAATTCTGGATTAGACAGTTATGAATTATAATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTTTTCTTGGAAATTCTGGATTAGACAGTTATGAATTATAATAT  950

seq1  TTTTGTGAAAAAAATTGGGAACCATGTGGCATAGACAGTTTGATAA-CCA  999
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTTGTGAAAAAAATTGGGAACCATGTGGCATAGACAGTTTGATAACCCA  1000

seq1  GGTCTAGTTTTAAAGCTCAAACCAGTGTGTACATTTGGGGGTAGGACAGG  1049
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  GGTCTAGTTTTAAAGCTC-AACCAGTGTGTACATTTGGGGGTA-GACAGG  1048

seq1  GATAATTTTTTCAGAGGAATTTTGCCAGTAGATTTTCAGAAGCTATG-TC  1098
      ||| |||||||||||||||||    ||||||| |||||||||||||| ||
seq2  GAT-ATTTTTTCAGAGGAATT---GCAGTAGA-TTTCAGAAGCTATGTTC  1093

seq1  TTAAAGAATTAAAATG-ACAAGAAG-ATGTCTCTAGAGGAGATGC  1141
      |||||||||   |||| |||||||| ||||||||||| |||||||
seq2  TTAAAGAAT---AATGAACAAGAAGAATGTCTCTAGA-GAGATGC  1134


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