BAC Information

Click to search

BAC

Clone NameB6Ng01-209O16
Chromosome17 (Build37)
Map Location 39,958,376 - 40,126,774
singlet/doubletdoublet
Overlap geneLOC672857, LOC627695
Upstream geneLOC100043297, LOC100043300, EG668200
Downstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209O16.bB6Ng01-209O16.g
ACCGA028400GA028401
length997889
definitionB6Ng01-209O16.b B6Ng01-209O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,126,206 - 40,126,774)(39,958,376 - 39,959,104)
sequence
gaattctttgatcatttagggcagagttttgtgcaaagtgaattatatag
gttttgttttgttttttttctcttctttcttttttaattatcttgtctta
tttacactccaagattttctccctttcctaggcctccctcccagaattct
ctttttttcaaaattttattagatattttcttcatttacatttcatatgc
tatcctgaaagtcccctattccctcaccctaccctgctcccctgcccacc
cattcccacttcttggccctggcgttcccctgtactgttgcatataaagt
tagcaagagtaggggcctatcttcccaatgatggcttactaggccatcct
tacttcatcccacttcccttttgcctctgagagtgtactcacctccctca
tcttcccgcccctccaaccccccatcatcctgcttccctgggacttcaat
tctctatagggttaggcatatcttctcccactcaggccagaagaggcagt
cagtcctctgctacatatgagccatggaacagccatgtttgatctttgtt
ggtggcttagtctctgggagttctaagggttcaaggttacttgatactgt
tgcagttcttattgggttgccatttctttcagttccttcagttcttcccc
tgattcttccatagtaatccttgaccacagtccaatggttggctgtcagt
atatgcatctttctcagtcagctgctggtagggcatctcagaagacaacc
acactaggctcctgtctgtaagcacagcatgacatcagcaatagtgtcag
gttttggacatggatccatccctgatcatgggatggatcccaatttaggg
gctggtcattggatggcctatacttcagtttgttgctccattttttgttc
cctgaaaatatattttaattctgttcttgcaccagtaccattttgttaaa
gaattcataattttttggagattattctcaatttgtactttcaatga

gaattcatcctcaataaaacttttgtgttcctatatgttgaaatgctcac
atcttgctctgaaagatttgcagagctttggtggataaatactttcttgg
caaatgtatttttaagctggcacctaggccacttcaattgaatagactgt
aattccagatgcagctaggaggtctaggtatagttatttagaattattaa
gggatatttgtgttgatttatttttcttctttggttttttttattagata
tttctttatttacatttcaaatgctatcccctttcctaatttcccctcca
aaagccctctataccccctttccctgctccccaacccacccactcccact
cctggaattccactatactggggcatagaaccttcataggacctagggcc
tctcctcccattgatgaggccattctcagctacatatacaactagtccca
catgtcacaccatgtgttttctttgattgatggtttagttcgaaggagct
ctgggtgtactgattaattcatattgatgttcctcctatgggacttcaga
ccccttcagctctttgagtactttctctagctccttcattggggaacttg
tgatctggatgattgtgaacatccacttctatttctgtttatgaaactct
taggcaaatggatggatctggagaaatatcatcttgactgaggtaacccc
atttgcagaagaacacacatgatatgcaatcacttgataagctcagaatc
cttcttagaagggggaacaaaacacccatggaaaggagttacagaagaca
aagttcagagcagagactggaaggaacgatcatccagagactgccccact
tgggggatctatcccataaaacaacctccattaccagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_40126206_40126774
seq2: B6Ng01-209O16.b_51_619 (reverse)

seq1  TCCCAGAGACTAAGCCACCAACAAAGATCAAACATGGCTGTTCCATGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGACTAAGCCACCAACAAAGATCAAACATGGCTGTTCCATGGCT  50

seq1  CATATGTAGCAGAGGACTGACTGCCTCTTCTGGCCTGAGTGGGAGAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTAGCAGAGGACTGACTGCCTCTTCTGGCCTGAGTGGGAGAAGAT  100

seq1  ATGCCTAACCCTATAGAGAATTGAAGTCCCAGGGAAGCAGGATGATGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTAACCCTATAGAGAATTGAAGTCCCAGGGAAGCAGGATGATGGGG  150

seq1  GGTTGGAGGGGCGGGAAGATGAGGGAGGTGAGTACACTCTCAGAGGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAGGGGCGGGAAGATGAGGGAGGTGAGTACACTCTCAGAGGCAAA  200

seq1  AGGGAAGTGGGATGAAGTAAGGATGGCCTAGTAAGCCATCATTGGGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTGGGATGAAGTAAGGATGGCCTAGTAAGCCATCATTGGGAAGA  250

seq1  TAGGCCCCTACTCTTGCTAACTTTATATGCAACAGTACAGGGGAACGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCCTACTCTTGCTAACTTTATATGCAACAGTACAGGGGAACGCCA  300

seq1  GGGCCAAGAAGTGGGAATGGGTGGGCAGGGGAGCAGGGTAGGGTGAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAAGAAGTGGGAATGGGTGGGCAGGGGAGCAGGGTAGGGTGAGGGA  350

seq1  ATAGGGGACTTTCAGGATAGCATATGAAATGTAAATGAAGAAAATATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGGACTTTCAGGATAGCATATGAAATGTAAATGAAGAAAATATCTA  400

seq1  ATAAAATTTTGAAAAAAAGAGAATTCTGGGAGGGAGGCCTAGGAAAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTTTGAAAAAAAGAGAATTCTGGGAGGGAGGCCTAGGAAAGGGA  450

seq1  GAAAATCTTGGAGTGTAAATAAGACAAGATAATTAAAAAAGAAAGAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTTGGAGTGTAAATAAGACAAGATAATTAAAAAAGAAAGAAGAG  500

seq1  AAAAAAAACAAAACAAAACCTATATAATTCACTTTGCACAAAACTCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACAAAACAAAACCTATATAATTCACTTTGCACAAAACTCTGCC  550

seq1  CTAAATGATCAAAGAATTC  569
      |||||||||||||||||||
seq2  CTAAATGATCAAAGAATTC  569


seq1: chr17_39958376_39959104
seq2: B6Ng01-209O16.g_69_799

seq1  GAATTCATCCTCAATAAAACTTTTGTGTTCCTATATGTTGAAATGCTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTCAATAAAACTTTTGTGTTCCTATATGTTGAAATGCTCAC  50

seq1  ATCTTGCTCTGAAAGATTTGCAGAGCTTTGGTGGATAAATACTTTCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCTCTGAAAGATTTGCAGAGCTTTGGTGGATAAATACTTTCTTGG  100

seq1  CAAATGTATTTTTAAGCTGGCACCTAGGCCACTTCAATTGAATAGACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTATTTTTAAGCTGGCACCTAGGCCACTTCAATTGAATAGACTGT  150

seq1  AATTCCAGATGCAGCTAGGAGGTCTAGGTATAGTTATTTAGAATTATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGATGCAGCTAGGAGGTCTAGGTATAGTTATTTAGAATTATTAA  200

seq1  GGGATATTTGTGTTGATTTATTTTTCTTCTTTGGTTTTTTTTATTAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATTTGTGTTGATTTATTTTTCTTCTTTGGTTTTTTTTATTAGATA  250

seq1  TTTCTTTATTTACATTTCAAATGCTATCCCCTTTCCTAATTTCCCCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTATTTACATTTCAAATGCTATCCCCTTTCCTAATTTCCCCTCCA  300

seq1  AAAGCCCTCTATACCCCCTTTCCCTGCTCCCCAACCCACCCACTCCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTCTATACCCCCTTTCCCTGCTCCCCAACCCACCCACTCCCACT  350

seq1  CCTGGAATTCCACTATACTGGGGCATAGAACCTTCATAGGACCTAGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAATTCCACTATACTGGGGCATAGAACCTTCATAGGACCTAGGGCC  400

seq1  TCTCCTCCCATTGATGAGGCCATTCTCAGCTACATATACAACTAGTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCCATTGATGAGGCCATTCTCAGCTACATATACAACTAGTCCCA  450

seq1  CATGTCACACCATGTGTTTTCTTTGATTGATGGTTTAGTTCGAAGGAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCACACCATGTGTTTTCTTTGATTGATGGTTTAGTTCGAAGGAGCT  500

seq1  CTGGGTGTACTGATTAATTCATATTGATGTTCCTCCTATGGGACTTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGTACTGATTAATTCATATTGATGTTCCTCCTATGGGACTTCAGA  550

seq1  CCCCTTCAGCTCTTTGAGTACTTTCTCTAGCTCCTTCATTGGGGAACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCAGCTCTTTGAGTACTTTCTCTAGCTCCTTCATTGGGGAACTTG  600

seq1  TGATCTGGATGATTGTGAACATCCACTTCTATTTCTGTTTATGAAACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGGATGATTGTGAACATCCACTTCTATTTCTGTTTATGAAACTCT  650

seq1  TAGGCAAATGGATGGATCTGGAG-AATATCATCTTGACTGAGGTAA-CCC  698
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  TAGGCAAATGGATGGATCTGGAGAAATATCATCTTGACTGAGGTAACCCC  700

seq1  AATTGCAGAAGAACACACATGATATGCAATC  729
      | |||||||||||||||||||||||||||||
seq2  ATTTGCAGAAGAACACACATGATATGCAATC  731


| Home | SequenceCutter | Blast | Download |