BAC Information

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BAC

Clone NameB6Ng01-210E24
Chromosome17 (Build37)
Map Location 58,365,216 - 58,523,357
singlet/doubletdoublet
Overlap geneCntnap5c
Upstream geneC3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916, LOC674419
Downstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210E24.bB6Ng01-210E24.g
ACCGA028684GA028685
length525941
definitionB6Ng01-210E24.b B6Ng01-210E24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,522,827 - 58,523,357)(58,365,216 - 58,366,146)
sequence
atgaaaactaagaataaaaacatttaaattttataatatatggttaagta
attatggtatatggctcatggctcacagtttcagaagcagtagtgtggtg
tagctctttcctatttgaaacatttcttttctataggaggttccttgatt
ctcagaacctaaatcgagctcatacagatcagagagcaaaatatctcaaa
tttccaggaagtttctgaaattttcaagattcacaagatatcaagtgcca
gggctaggagactctccaaccaatcaagctccatgaaaattgtgtagaga
gcttcacggctgcaggtttcacgagtcatcactctgtattgggtgggatt
ctcagtgattcagctgcctttcagtctttatgctcctatcttgggtgaat
agaagtttgtttgcttcacacaggaagtcacccaactggtttaagaaggt
tttcttgatgccccagtacaggggaacaccagagccaaaaagtgggagtg
gctgggtagaggagtgggggagagg

gaattcactttgcatctttctttgtttctttgtttctttgtttctctgtc
tctttctttctttctttctttctttctttctttctttctttctttctttc
tttctttctttccttctttcttttttccctttctttctttctttctttct
ttctttctttctttctttctttctttctttctttctttctttctttcttc
tttctctctctctctttctttctttctttctttctttctttctttctttc
tttctttctttctttctgtctttctgcctttctttctttctttctttctt
tctttctttctttctttttctttctttcttttttgttttattttggtttt
tttttttgtttgtttgtttggtttggtttggttttttgaaacagggtttc
tctgtgtaaccctggctgtcctggaactcactttgtagaccaccaggctg
gtctcaaactcagaaatctgcctgcctctgcctctgcctcccaagtgcta
ggattaaagatgtgcaccaccacagcctggctcactttgcatttttacct
ggtgacaatcctaagggaatgacaaatgctagcgcatctgaggagttaag
tagcaaattagaggtttaagggcaactgtttggcattacacttattccag
tggtattgaaggcctcagagaaaacagatcacgcagagctgttaagaaaa
tgtaagaagggtgggggtgtgtgcttttcattgttttccctgaggcagtt
gagggagatttatagtttgcttgctttggtttgctttaagctacataaat
tgtacttaagctctcattcctaattctttataagaattgagcacccaagg
tgagacagagttggtggaaagagctagaggatgatcagcattagagcata
tactgtttagcagagacaatttaattcaagcaccacatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_58522827_58523357
seq2: B6Ng01-210E24.b_43_573 (reverse)

seq1  CCTCTCCCCCACTCCTCTACCCAGCCACTCCCACTTTTTGGCTCTGGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCCCACTCCTCTACCCAGCCACTCCCACTTTTTGGCTCTGGTGT  50

seq1  TCCCCTGTACTGGGGCATCAAGAAAACCTTCTTAAACCAGTTGGGTGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTACTGGGGCATCAAGAAAACCTTCTTAAACCAGTTGGGTGACT  100

seq1  TCCTGTGTGAAGCAAACAAACTTCTATTCACCCAAGATAGGAGCATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTGAAGCAAACAAACTTCTATTCACCCAAGATAGGAGCATAAAG  150

seq1  ACTGAAAGGCAGCTGAATCACTGAGAATCCCACCCAATACAGAGTGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAGGCAGCTGAATCACTGAGAATCCCACCCAATACAGAGTGATGA  200

seq1  CTCGTGAAACCTGCAGCCGTGAAGCTCTCTACACAATTTTCATGGAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGAAACCTGCAGCCGTGAAGCTCTCTACACAATTTTCATGGAGCTT  250

seq1  GATTGGTTGGAGAGTCTCCTAGCCCTGGCACTTGATATCTTGTGAATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTTGGAGAGTCTCCTAGCCCTGGCACTTGATATCTTGTGAATCTT  300

seq1  GAAAATTTCAGAAACTTCCTGGAAATTTGAGATATTTTGCTCTCTGATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTCAGAAACTTCCTGGAAATTTGAGATATTTTGCTCTCTGATCT  350

seq1  GTATGAGCTCGATTTAGGTTCTGAGAATCAAGGAACCTCCTATAGAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGCTCGATTTAGGTTCTGAGAATCAAGGAACCTCCTATAGAAAAG  400

seq1  AAATGTTTCAAATAGGAAAGAGCTACACCACACTACTGCTTCTGAAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTCAAATAGGAAAGAGCTACACCACACTACTGCTTCTGAAACTG  450

seq1  TGAGCCATGAGCCATATACCATAATTACTTAACCATATATTATAAAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATGAGCCATATACCATAATTACTTAACCATATATTATAAAATTT  500

seq1  AAATGTTTTTATTCTTAGTTTTCATGAATTC  531
      |||||||||||||||||||||||||||||||
seq2  AAATGTTTTTATTCTTAGTTTTCATGAATTC  531


seq1: chr17_58365216_58366146
seq2: B6Ng01-210E24.g_100_1007

seq1  TTCTTTGTTTCTCTGTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTTTCTCTGTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  50

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCTTTTTTCCCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCTTTCTTTTTTCCCTTTC  100

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  150

seq1  TCTTTCTTTCTTTCTTCTTTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTCTTTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTT  200

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTGTCTTTCTGCCTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTGTCTTTCTGCCTTTCT  250

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTCTTTCTTTCTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTCTTTCTTTCTTTTT  300

seq1  TGTTTTATTTTGGTTTTTTTTTTTGTTTGTTTGTTTGGTTTGGTTTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTTTGGTTTTTTTTTTTGTTTGTTTGTTTGGTTTGGTTTGGTT  350

seq1  TTTTGAAACAGGGTTTCTCTGTGTAACCCTGGCTGTCCTGGAACTCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAACAGGGTTTCTCTGTGTAACCCTGGCTGTCCTGGAACTCACTT  400

seq1  TGTAGACCACCAGGCTGGTCTCAAACTCAGAAATCTGCCTGCCTCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCACCAGGCTGGTCTCAAACTCAGAAATCTGCCTGCCTCTGCCT  450

seq1  CTGCCTCCCAAGTGCTAGGATTAAAGATGTGCACCACCACAGCCTGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCAAGTGCTAGGATTAAAGATGTGCACCACCACAGCCTGGCTC  500

seq1  ACTTTGCATTTTTACCTGGTGACAATCCTAAGGGAATGACAAATGCTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCATTTTTACCTGGTGACAATCCTAAGGGAATGACAAATGCTAGC  550

seq1  GCATCTGAGGAGTTAAGTAGCAAATTAGAGGTTTAAGGGCAACTGTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGAGGAGTTAAGTAGCAAATTAGAGGTTTAAGGGCAACTGTTTGG  600

seq1  CATTACACTTATTCCAGTGGTATTGAAGGCCTCAGAGAAAACAGATCACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACACTTATTCCAGTGGTATTGAAGGCCTCAGAGAAAACAGATCACG  650

seq1  CAGAGCTGTTAAGAAAATGTAAGAA-GGTGGGGGTGTGTGCTTTTCATTG  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAGAGCTGTTAAGAAAATGTAAGAAGGGTGGGGGTGTGTGCTTTTCATTG  700

seq1  TTTTCCCTGAGGCAGTTGA-GGAGATTTATAGTTTGCTTGCTTTGGGTTT  748
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  TTTTCCCTGAGGCAGTTGAGGGAGATTTATAGTTTGCTTGCTTT-GGTTT  749

seq1  GCTTTTAAGCTACAATAAAATTGTACTTAAGCTCCCATTCCTAAATTCTT  798
      || |||||||||||   ||||||||||||||||| ||||||| ||||| |
seq2  GC-TTTAAGCTACA--TAAATTGTACTTAAGCTCTCATTCCT-AATTC-T  794

seq1  TTATAAAGAATTTGAGCACCCCAAAGGTGAGACCAGAGGTTGGGTGGAAA  848
      |||| ||||| ||||||||||  ||||||||| |||||  | ||||||||
seq2  TTAT-AAGAA-TTGAGCACCC--AAGGTGAGA-CAGAG--TTGGTGGAAA  837

seq1  AGGAGCTAGAGGGATGATCAGCAATTAAGAGCATATACTGTTTTTGCAGA  898
        |||||||| ||||||||||||  | ||||||||||||| ||| |||||
seq2  --GAGCTAGA-GGATGATCAGCA--TTAGAGCATATACTG-TTTAGCAGA  881

seq1  GAACCAAAATTTAAATTCAAGCAACCACATCAG  931
      ||  |||   || ||||||||| ||||||||||
seq2  GA--CAA---TTTAATTCAAGC-ACCACATCAG  908


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