BAC Information

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BAC

Clone NameB6Ng01-210G18
Chromosome17 (Build37)
Map Location 89,541,965 - 89,676,966
singlet/doubletdoublet
Overlap geneFshr
Upstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867
Downstream geneLOC100043904, LOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210G18.bB6Ng01-210G18.g
ACCGA028763GA028764
length1,125994
definitionB6Ng01-210G18.b B6Ng01-210G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,541,965 - 89,543,106)(89,675,970 - 89,676,966)
sequence
gaattctcacaaaacgagattgagaaacagagctatcatttccccatgag
aacaaaggcctctgactgctcttttcaatgcccagaactctcagtttgtt
ttgcagaagccctgtgagtaggagtaggactgatccagatggaggacagg
ggccacactgtaggtgacatctcaggataaaggacactctatgaaatggt
gtctctacgaaaatgatggcttgcctctgtggcctgttcatgagcagagc
aaggtcctgacttgttaatttccctgtcttgttaaatgaggagggatgtg
gctgaaacgatcaaggcactgtctgtgattctcttgatttcactgaaata
ccagcctcgctatgatcagtttccctctcatgaggttccagagcaggtgt
aagaaaactctatgcctaagatagaatacggctaacgaggagcccagagc
agagtcgaaacagcaactctcttctttccttttgatgtgactgagtctcc
accagcttatcaaagcctaaaaccatgggttatttagactgtgtgccctg
aggtttccttatcccttaaggagacattgagggaactcacaattatcctt
gcaatttcactgtgtaaagacttggggaagatgatagtagcagtactcat
gctggacagggagacagggaaggtcattaaccagccaacctttagctgga
gaagattagagtagatttaatctttgtaaaatgcccccagggcctaatga
cccctccaagaagaggtgttccctgagggtggcaactagctttcctctgg
tgtcccattaggctggatagattaacaagctcccttgacagtgctgcagg
gttttgtttttgtattttttccaggtcaggcagaggactgctgtatgttg
ggaaggagcagtcgctgatataccagggccagctgccatctcgatcctag
ctgcttgggaaggatagagaaatcctccaggtcagtcagagtcaggacga
ttcaccacaagaaagtctctgagaatagtctgctctcggaatcctgcttt
cattctttctccttttttttttttttttccaacccatcaaggatttatag
aaaatagccaaagctttaataaaaa

gaattcctaaatgtgcataagactaccggaatagatatctgtttcgtgga
actttgctttggaaatactgatttctccccctcagcctgttcttcctatt
atctcaagtgatacagaaggaatattcaagcataaatagttgaagcccaa
gtttaatgttttaaaacaaattttattttaattcttatttttttttcttt
cattcttggaaataaagctttccaaagatctctctgaatatcattgtagc
aataatttatctgcacgactattttgggtttctttcaagttctgtggttt
tcttactcagccattataaactcttccctggtgtctgagctctaaaggaa
tcattgcactgggatatttgatcactgagagcagacattattcatcaaat
ggtctcttccagaactcccagccttaagcctttgagtcagacaattgaac
attttctattagtccataaatgcaggttttgaggactagatagcctttga
gaaagatctctcattaactctttctcactgaagatttttctcttgccaaa
atttatctatttgattttaaattattgatcaaaatttgagtttgatactt
gatactagcatttattggatttaggtattatacatttagatctgttctgc
ttttgaagtattcttatcattgtcaacatagcttgtctacttgtccatcc
agggatcttgtttcctttcaaagagatgattgattatataaatttctatc
tggtgtgcatagtgaatggctgatgacattgccatatcggcaatatgggc
gatatggcttatataaactagattcattaatcatatttcatttcacacag
ccatcacttttcatcacttccagtcccttgttatttattcatgatgttaa
atatcctgaatatcttttgcatgttttctatttccaaattaaaaccgttt
atgtactattaaagtcattgttctccattaatatgtcactttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89541965_89543106
seq2: B6Ng01-210G18.b_44_1168

seq1  GAATTCTCACAAAACGAGATTGAGAAACAGAGCTATCATTTCCCCATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACAAAACGAGATTGAGAAACAGAGCTATCATTTCCCCATGAG  50

seq1  AACAAAGGCCTCTGACTGCTCTTTTCAATGCCCAGAACTCTCAGTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGGCCTCTGACTGCTCTTTTCAATGCCCAGAACTCTCAGTTTGTT  100

seq1  TTGCAGAAGCCCTGTGAGTAGGAGTAGGACTGATCCAGATGGAGGACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAAGCCCTGTGAGTAGGAGTAGGACTGATCCAGATGGAGGACAGG  150

seq1  GGCCACACTGTAGGTGACATCTCAGGATAAAGGACACTCTATGAAATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACACTGTAGGTGACATCTCAGGATAAAGGACACTCTATGAAATGGT  200

seq1  GTCTCTACGAAAATGATGGCTTGCCTCTGTGGCCTGTTCATGAGCAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTACGAAAATGATGGCTTGCCTCTGTGGCCTGTTCATGAGCAGAGC  250

seq1  AAGGTCCTGACTTGTTAATTTCCCTGTCTTGTTAAATGAGGAGGGATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCTGACTTGTTAATTTCCCTGTCTTGTTAAATGAGGAGGGATGTG  300

seq1  GCTGAAACGATCAAGGCACTGTCTGTGATTCTCTTGATTTCACTGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAACGATCAAGGCACTGTCTGTGATTCTCTTGATTTCACTGAAATA  350

seq1  CCAGCCTCGCTATGATCAGTTTCCCTCTCATGAGGTTCCAGAGCAGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCGCTATGATCAGTTTCCCTCTCATGAGGTTCCAGAGCAGGTGT  400

seq1  AAGAAAACTCTATGCCTAAGATAGAATACGGCTAACGAGGAGCCCAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACTCTATGCCTAAGATAGAATACGGCTAACGAGGAGCCCAGAGC  450

seq1  AGAGTCGAAACAGCAACTCTCTTCTTTCCTTTTGATGTGACTGAGTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCGAAACAGCAACTCTCTTCTTTCCTTTTGATGTGACTGAGTCTCC  500

seq1  ACCAGCTTATCAAAGCCTAAAACCATGGGTTATTTAGACTGTGTGCCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTTATCAAAGCCTAAAACCATGGGTTATTTAGACTGTGTGCCCTG  550

seq1  AGGTTTCCTTATCCCTTAAGGAGACATTGAGGGAACTCACAATTATCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCCTTATCCCTTAAGGAGACATTGAGGGAACTCACAATTATCCTT  600

seq1  GCAATTTCACTGTGTAAAGACTTGGGGAAGATGATAGTAGCAGTACTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTCACTGTGTAAAGACTTGGGGAAGATGATAGTAGCAGTACTCAT  650

seq1  GCTGGACAGGGAGACAGGGAAGGTCATTAACCAGCCAACCTTTAGCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACAGGGAGACAGGGAAGGTCATTAACCAGCCAACCTTTAGCTGGA  700

seq1  GAAGATTAGAGTAGATTTAATCTTTGTAAAATGCCCCCAGGGCCTAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTAGAGTAGATTTAATCTTTGTAAAATGCCCCCAGGGCCTAATGA  750

seq1  CCCCTCCAAGAAGAGGTGTTCCCTGAGGGTGGCAACTAGCTTTCCTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCAAGAAGAGGTGTTCCCTGAGGGTGGCAACTAGCTTTCCTCTGG  800

seq1  TGTCCCATTAGGCTGGATAGATTAACAAGCTCCCTTGACAGTGCTGCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCATTAGGCTGGATAGATTAACAAGCTCCCTTGACAGTGCTGCAGG  850

seq1  GTTTTGTTTTTGTATTTTTTCCAGGTCAGGCAGAGGACTGCTGTATGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTTGTATTTTTTCCAGGTCAGGCAGAGGACTGCTGTATGTTG  900

seq1  GGAAGGAGCAGTCGCTGATATACCAGGGCCAGCTGCCATCTCGATCCTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGCAGTCGCTGATATACCAGGGCCAGCTGCCATCTCGATCCTAG  950

seq1  CTGCTTGGGAAGGATAGAGAAATCCTCCAGGTCAGTCAGAGTTCAGGACG  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGCTTGGGAAGGATAGAGAAATCCTCCAGGTCAGTCAGAG-TCAGGACG  999

seq1  ATTCACCACAAGAAAGTTCTTCTGAGAATAGTTCTGCTCTCCGGAATCCC  1050
      |||||||||||||||||   ||||||||||| |||||||| |||||| ||
seq2  ATTCACCACAAGAAAGT--CTCTGAGAATAG-TCTGCTCT-CGGAAT-CC  1044

seq1  TGCTTTCATTTCTTTTCTTTC-CTTTTTTTTTTTTTTTTTCAAACCCATC  1099
      ||||||||      ||||||| | ||||||||||||||||| ||||||||
seq2  TGCTTTCA------TTCTTTCTCCTTTTTTTTTTTTTTTTCCAACCCATC  1088

seq1  AAGGATTTTATAAAGAAAATAGCAAAAGCTTTAAAATTAAAAA  1142
      |||||||   || |||||||||| ||||||||||   ||||||
seq2  AAGGATT---TATAGAAAATAGCCAAAGCTTTAA---TAAAAA  1125


seq1: chr17_89675970_89676966
seq2: B6Ng01-210G18.g_64_1057 (reverse)

seq1  AGAAAGTGAACATAATTAATGGAGAAACAATGACTTTAATAGTACATAAA  50
      |||||||| |||| |||||||||| |||||||||||||||||||||||||
seq2  AGAAAGTG-ACAT-ATTAATGGAG-AACAATGACTTTAATAGTACATAAA  47

seq1  CGGTTTTAATTTGGAAATAGAAAACATGCAAAAGATATTCAGGATATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CGGTTTTAATTTGGAAATAGAAAACATGCAAAAGATATTCAGGATATTT-  96

seq1  AACATCATGAATAAATAACAAGGGACTGGAAGTGATGAAAAGTGATGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATGAATAAATAACAAGGGACTGGAAGTGATGAAAAGTGATGGCT  146

seq1  GTGTGAAATGAAATATGATTAATGAATCTAGTTTATATAAGCCATATTG-  199
      ||||||||||||||||||||||||||||||||||||||||||||||| | 
seq2  GTGTGAAATGAAATATGATTAATGAATCTAGTTTATATAAGCCATATCGC  196

seq1  CCATATTGCCGATATGGCAATGTCATCAGCCATTCACTATGCACACCAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTGCCGATATGGCAATGTCATCAGCCATTCACTATGCACACCAGA  246

seq1  TAGAAATTTATATAATCAATCATCTCTTTGAAAGGAAACAAGATCCCTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTTATATAATCAATCATCTCTTTGAAAGGAAACAAGATCCCTGG  296

seq1  ATGGACAAGTAGACAAGCTATGTTGACAATGATAAGAATACTTCAAAAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAAGTAGACAAGCTATGTTGACAATGATAAGAATACTTCAAAAGC  346

seq1  AGAACAGATCTAAATGTATAATACCTAAATCCAATAAATGCTAGTATCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGATCTAAATGTATAATACCTAAATCCAATAAATGCTAGTATCAA  396

seq1  GTATCAAACTCAAATTTTGATCAATAATTTAAAATCAAATAGATAAATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAACTCAAATTTTGATCAATAATTTAAAATCAAATAGATAAATTT  446

seq1  TGGCAAGAGAAAAATCTTCAGTGAGAAAGAGTTAATGAGAGATCTTTCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGAGAAAAATCTTCAGTGAGAAAGAGTTAATGAGAGATCTTTCTC  496

seq1  AAAGGCTATCTAGTCCTCAAAACCTGCATTTATGGACTAATAGAAAATGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTATCTAGTCCTCAAAACCTGCATTTATGGACTAATAGAAAATGT  546

seq1  TCAATTGTCTGACTCAAAGGCTTAAGGCTGGGAGTTCTGGAAGAGACCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGTCTGACTCAAAGGCTTAAGGCTGGGAGTTCTGGAAGAGACCAT  596

seq1  TTGATGAATAATGTCTGCTCTCAGTGATCAAATATCCCAGTGCAATGATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAATAATGTCTGCTCTCAGTGATCAAATATCCCAGTGCAATGATT  646

seq1  CCTTTAGAGCTCAGACACCAGGGAAGAGTTTATAATGGCTGAGTAAGAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGAGCTCAGACACCAGGGAAGAGTTTATAATGGCTGAGTAAGAAA  696

seq1  ACCACAGAACTTGAAAGAAACCCAAAATAGTCGTGCAGATAAATTATTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGAACTTGAAAGAAACCCAAAATAGTCGTGCAGATAAATTATTGC  746

seq1  TACAATGATATTCAGAGAGATCTTTGGAAAGCTTTATTTCCAAGAATGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGATATTCAGAGAGATCTTTGGAAAGCTTTATTTCCAAGAATGAA  796

seq1  AGAAAAAAAAATAAGAATTAAAATAAAATTTGTTTTAAAACATTAAACTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAATAAGAATTAAAATAAAATTTGTTTTAAAACATTAAACTT  846

seq1  GGGCTTCAACTATTTATGCTTGAATATTCCTTCTGTATCACTTGAGATAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCAACTATTTATGCTTGAATATTCCTTCTGTATCACTTGAGATAA  896

seq1  TAGGAAGAACAGGCTGAGGGGGAGAAATCAGTATTTCCAAAGCAAAGTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGAACAGGCTGAGGGGGAGAAATCAGTATTTCCAAAGCAAAGTTC  946

seq1  CACGAAACAGATATCTATTCCGGTAGTCTTATGCACATTTAGGAATTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAAACAGATATCTATTCCGGTAGTCTTATGCACATTTAGGAATTC  994


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