BAC Information

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BAC

Clone NameB6Ng01-210I20
Chromosome17 (Build37)
Map Location 21,039,646 - 21,040,745
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7
Downstream geneV1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210I20.bB6Ng01-210I20.g
ACCGA028863GA028864
length1,1641,105
definitionB6Ng01-210I20.b B6Ng01-210I20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctaagccccatttttaatggggttatttgattt
tctgaagtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttctttgat
ccatttagatttgaccttagtacaaggagataagtatggatcgattcgca
ttcttctacatgataacaactagttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtctctataccagtaccatgcagtttttaccacaattgct
ctgtattaaatctttaggtcaggcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatcctaggttttttgttattccagatga
atttgcaaattgctccttctaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgcagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttctttaatttcttttgttcagggacttgaagtttttatcata
cagatctttcacttccttagttagagtcacgccgagatattttatattat
tgtgactattgaaaagggtgtgtttccctaatttcttttctcagcctgta
ttctttgtgtagagaaagccattgactgttgagtaatttatatcagctac
tcacgagctgttatcagtttagagtcctgtgatttaggtcacctatatat
ctatcatcactgcaaggtaaacttgactcctttgcagttgaatccttgat
ctcccttttgatgc
gaattcttgtgggcaaatccacctgtatgttcgagtgtactctcattctc
tctgtgtgtatgtgtagacctgttttgtgtctctgtgtgtgtctgtttct
ctcgtgtctgtctatgtgtgtttgggtttatttgtacagagaggacagga
tgacatccttatttagacactttttaaaaagcctcatcttaatgttcatt
atttgagaaagagtttctaactggctcagaatgctttgcacattctagcc
tgctggtcttgaaattccacaaatactccaaattttggatgattgcatgt
cctaacaaagaacatttaaaaaatggtttgttcagatttatttatatgga
aatgactttgacaactcatctgtctcctcaatttaaaacttaatttatat
gctacatcagctagtcaaatgttttcatgtgatgtagctgagtgtcaaag
tgatactgtttaataacacatttggtaaatagtgctatgcttttactcca
ggaaagatttaaatatttgatgcgccgggtgtggtgatgcacacaccttt
aatcccagcattcgggaggcagaggcaggcggatttctgagttcaaggcc
agcctggtctacaaagagagttccaggacagccagagttatacagagaaa
ccctgtctcgaaaacaaaaaaaaaaaaaaaaacccaaaaatatttgatgc
aaaaatgaatattgaagcttgtcattacattacatgcttttaatatcagc
attcaggagggaaaagaagacagacctctgtgagttgaagacagccttgt
ctatacagttaattctaggacagacagggctatatatatagagagagacc
ttgtcacaaaacaacaaaacaaacaaacaaacaagtcaccaaaaattgga
tattgaatctatcatttgctaatcaaattcaacttggcatggaacagtgt
tttcaggactagagaataattgaggatatcattacaactaggtggcgaga
aaagtagcaaaaaatttgcaagttagaaaaaacctaaggttaaaaatgtg
ctctcataatatttatggaataccagaacataggaatagtagcatcagct
ggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_21039646_21040745
seq2: B6Ng01-210I20.g_63_1167 (reverse)

seq1  TCTCCAGGCTGATTGCCTACTA-TCCTATG-TCT-GTATTCCAT-AATAT  46
      |||||| ||||||   |||||| ||||||| ||| ||||||||| |||||
seq2  TCTCCA-GCTGAT--GCTACTATTCCTATGTTCTGGTATTCCATAAATAT  47

seq1  TATGAGAGCCACATTTTTAAACTTAG--TTTTTCTAACTTGC-AATTTTA  93
      |||||||| ||||||||||| |||||  |||||||||||||| |||||| 
seq2  TATGAGAG-CACATTTTTAACCTTAGGTTTTTTCTAACTTGCAAATTTTT  96

seq1  TGCTACTTTTCTCGC--ACTAGTTGTAATGATATCCTCAAATTATTCTCT  141
      |||||||||||||||   |||||||||||||||||||| |||||||||||
seq2  TGCTACTTTTCTCGCCACCTAGTTGTAATGATATCCTC-AATTATTCTCT  145

seq1  AGTCCTGAAAACACTG-TCCATGCCAAGTTGAATTTGATTAGCAAATGAT  190
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTCCTGAAAACACTGTTCCATGCCAAGTTGAATTTGATTAGCAAATGAT  195

seq1  AGATTCAATATCCAATTTTTGGTGACTTGTTTGTTTGTTTGTTTGTTTGT  240
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  AGATTCAATATCCAATTTTTGGTGACTTGTTTGTTTGTTTGTTTTGTTGT  245

seq1  TTTGTGACAAGGTCTCTCTCTATATATATAGCCCTGTCTGTCCTAGAATT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACAAGGTCTCTCTCTATATATATAGCCCTGTCTGTCCTAGAATT  295

seq1  AACTGTATAGACAAGGCTGTCTTCAACTCACAGAGGTCTGTCTTCTTTTC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATAGACAAGGCTGTCTTCAACTCACAGAGGTCTGTCTTCTTTTC  345

seq1  CCTCCTGAATGCTGATATTAAAAGCATGTAATGTAATGACAAGCTTCAAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGAATGCTGATATTAAAAGCATGTAATGTAATGACAAGCTTCAAT  395

seq1  ATTCATTTTTGCATCAAATATTTTTGGGTTTTTTTTTTTTTTTTTGTTTT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTTGCATCAAATATTTTTGGGTTTTTTTTTTTTTTTTTGTTTT  445

seq1  CGAGACAGGGTTTCTCTGTATAACTCTGGCTGTCCTGGAACTCTCTTTGT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGGGTTTCTCTGTATAACTCTGGCTGTCCTGGAACTCTCTTTGT  495

seq1  AGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAA  545

seq1  TGCTGGGATTAAAGGTGTGTGCATCACCACACCCGGCGCATCAAATATTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTAAAGGTGTGTGCATCACCACACCCGGCGCATCAAATATTT  595

seq1  AAATCTTTCCTGGAGTAAAAGCATAGCACTATTTACCAAATGTGTTATTA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTCCTGGAGTAAAAGCATAGCACTATTTACCAAATGTGTTATTA  645

seq1  AACAGTATCACTTTGACACTCAGCTACATCACATGAAAACATTTGACTAG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATCACTTTGACACTCAGCTACATCACATGAAAACATTTGACTAG  695

seq1  CTGATGTAGCATATAAATTAAGTTTTAAATTGAGGAGACAGATGAGTTGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTAGCATATAAATTAAGTTTTAAATTGAGGAGACAGATGAGTTGT  745

seq1  CAAAGTCATTTCCATATAAATAAATCTGAACAAACCATTTTTTAAATGTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCATTTCCATATAAATAAATCTGAACAAACCATTTTTTAAATGTT  795

seq1  CTTTGTTAGGACATGCAATCATCCAAAATTTGGAGTATTTGTGGAATTTC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTAGGACATGCAATCATCCAAAATTTGGAGTATTTGTGGAATTTC  845

seq1  AAGACCAGCAGGCTAGAATGTGCAAAGCATTCTGAGCCAGTTAGAAACTC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAGCAGGCTAGAATGTGCAAAGCATTCTGAGCCAGTTAGAAACTC  895

seq1  TTTCTCAAATAATGAACATTAAGATGAGGCTTTTTAAAAAGTGTCTAAAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAAATAATGAACATTAAGATGAGGCTTTTTAAAAAGTGTCTAAAT  945

seq1  AAGGATGTCATCCTGTCCTCTCTGTACAAATAAACCCAAACACACATAGA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTCATCCTGTCCTCTCTGTACAAATAAACCCAAACACACATAGA  995

seq1  CAGACACGAGAGAAACAGACACACACAGAGACACAAAACAGGTCTACACA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACGAGAGAAACAGACACACACAGAGACACAAAACAGGTCTACACA  1045

seq1  TACACACAGAGAGAATGAGAGTACACTCGAACATACAGGTGGATTTGCCC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAGAGAGAATGAGAGTACACTCGAACATACAGGTGGATTTGCCC  1095

seq1  ACAAGAATTC  1100
      ||||||||||
seq2  ACAAGAATTC  1105