BAC Information

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BAC

Clone NameB6Ng01-212N20
Chromosome17 (Build37)
Map Location 59,801,729 - 59,968,301
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537, LOC100043542
Downstream geneLOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212N20.bB6Ng01-212N20.g
ACCGA030550GA030551
length1,190302
definitionB6Ng01-212N20.b B6Ng01-212N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,967,093 - 59,968,301)(59,801,729 - 59,802,030)
sequence
gaattctttagctatatgatacagatcccaagagaccattggctctgatt
cactttggctttcttaccctcatcttcatgttcagaatatgatcattatt
ttgtacatttttctgtataaaaccacttcttattatatactaaggcctct
attttaatttctttttataacctagtatttttttttattctttgagactg
tcacatcgtgatcacactcacttcccatgcctaccttgaccttgtgactt
ctactccagcccccaaaaataaatttacattttaaaaaatagaacaaaac
ttaaaagtctaaattgtgttatctatatacttaatggagcatggtcaaac
tctctttaactagaactaagcccttcgtctcaaagtcttaagtttgactc
acaatccttcctttatctcatgattgcttccgttcttggctatacaaaat
cactttcacggctctgatttttcacataatttaaggcagaatgttcctgc
atattataaagtccaagcaggtccttttgaaccattcctgctcttcttca
ctaaggtgattaacctttctctgcttttatatagttttgtatgaaaagca
tatagtagtgtaacttttttttttttggattcctaaaatgttgatacaga
tactgttattgttgctgctatatcaaccattagattgttaatttatatga
gataccatgatccaagtggtaacagaaggccctgtcctagagctgctgaa
tttaaggagaaacagtgtaaagagggagagagagattcctgcatctcagt
cgtgaaggaagcagagtgaacaaaggtcaacagagagaaattgacatcca
attgaagtgcatgaaaaagcacatattcacaagtattttaggtgattcat
atatttaatcttcataataatgctgtttttttctctaatctcaagcatac
aggataccccaaattacttattcattaaaaccatctaaaggagcctagat
attcctttttttctcttcagattgaaaagtgcacgtttacttatttaact
acagtaattaaataagctgtttagaagttctcactttgttggacaagtca
ttagaataagaatgaattcaggaatcaggatcttccacttcatatggata
aacctattcctagaccagtaatggcatgagagcaatattg

tagaatcccatcccagagagcatacacattaatcatcacacacattccac
tgattttattcagatatacacacgtgaatttgatatatttgttatgaaag
tatcttaaacctttttcttagatggctgtatacaattatctattatatat
atatgtatatatattatacacatatataatatacacattatatataacat
acatattatatatatgctatatatacatatatatcagtactataatatat
atatatatatattatatagtggattagttattataatatataggttttta
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_59967093_59968301
seq2: B6Ng01-212N20.b_46_1235 (reverse)

seq1  CAATATTGCTCCTCATGCCATTTACTGTGTCATAGAGATAGATTTTATCC  50
      |||||||||| ||||||||| |||||| ||| |||  ||||  |||||||
seq2  CAATATTGCT-CTCATGCCA-TTACTG-GTC-TAGGAATAG-GTTTATCC  45

seq1  ACTTATTGGAGTTGTGAAGGATCTTTGAATTCCTTGAAATCAATTTCTTA  100
      |  |||    |  ||| | |||| |   ||||| |||| |||  ||||||
seq2  A--TAT----GAAGTGGAAGATCCT--GATTCC-TGAATTCA--TTCTTA  84

seq1  TTCCTAATGACTTGTCAAACAAAAGTGAGAACCTCTAAACAGCTTATTTA  150
      || ||||||||||||| ||| ||||||||||| |||||||||||||||||
seq2  TT-CTAATGACTTGTCCAAC-AAAGTGAGAACTTCTAAACAGCTTATTTA  132

seq1  TTTTACTGTAGTTAAATAAGTAAACGTTGCCACTTTTCAATCTGAAGAG-  199
        |||||||||||||||||||||||||   ||||||||||||||||||| 
seq2  -ATTACTGTAGTTAAATAAGTAAACGT--GCACTTTTCAATCTGAAGAGA  179

seq1  AAAAAAGGAATATCTAGGCTCCTTTAGATGGTTTTATTGAATAAGTAATT  249
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAAAAGGAATATCTAGGCTCCTTTAGATGGTTTTAATGAATAAGTAATT  229

seq1  T-GGGTATCCTGTATGCTTGAGATTAGAGAAAAAAACAGCATTATTTATG  298
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGGGTATCCTGTATGCTTGAGATTAGAGAAAAAAACAGCATTA-TTATG  278

seq1  AAGA-TAAATATATGAATCACCTAAAATTACTTGTGAATATGTGCTTTTT  347
      |||| |||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGATTAAATATATGAATCACCTAAAA-TACTTGTGAATATGTGCTTTTT  327

seq1  CATGCACTTCAATTGGATGTCAATTTCTCTCTGTTGACC-TTGTTCACTC  396
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATGCACTTCAATTGGATGTCAATTTCTCTCTGTTGACCTTTGTTCACTC  377

seq1  TGCTTCCTTCACGACTGAGATGCAGGAATCTCTCTCTCCCTCTTTACACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTTCACGACTGAGATGCAGGAATCTCTCTCTCCCTCTTTACACT  427

seq1  GTTTCTCCTTAAATTCAGCAGCTCTAGGACAGGGCCTTCTGTTACCACTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCCTTAAATTCAGCAGCTCTAGGACAGGGCCTTCTGTTACCACTT  477

seq1  GGATCATGGTATCTCATATAAATTAACAATCTAATGGTTGATATAGCAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATGGTATCTCATATAAATTAACAATCTAATGGTTGATATAGCAGC  527

seq1  AACAATAACAGTATCTGTATCAACATTTTAGGAATCCAAAAAAAAAAAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAACAGTATCTGTATCAACATTTTAGGAATCCAAAAAAAAAAAAG  577

seq1  TTACACTACTATATGCTTTTCATACAAAACTATATAAAAGCAGAGAAAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTACTATATGCTTTTCATACAAAACTATATAAAAGCAGAGAAAGG  627

seq1  TTAATCACCTTAGTGAAGAAGAGCAGGAATGGTTCAAAAGGACCTGCTTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCACCTTAGTGAAGAAGAGCAGGAATGGTTCAAAAGGACCTGCTTG  677

seq1  GACTTTATAATATGCAGGAACATTCTGCCTTAAATTATGTGAAAAATCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTATAATATGCAGGAACATTCTGCCTTAAATTATGTGAAAAATCAG  727

seq1  AGCCGTGAAAGTGATTTTGTATAGCCAAGAACGGAAGCAATCATGAGATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGTGAAAGTGATTTTGTATAGCCAAGAACGGAAGCAATCATGAGATA  777

seq1  AAGGAAGGATTGTGAGTCAAACTTAAGACTTTGAGACGAAGGGCTTAGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGATTGTGAGTCAAACTTAAGACTTTGAGACGAAGGGCTTAGTT  827

seq1  CTAGTTAAAGAGAGTTTGACCATGCTCCATTAAGTATATAGATAACACAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTAAAGAGAGTTTGACCATGCTCCATTAAGTATATAGATAACACAA  877

seq1  TTTAGACTTTTAAGTTTTGTTCTATTTTTTAAAATGTAAATTTATTTTTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACTTTTAAGTTTTGTTCTATTTTTTAAAATGTAAATTTATTTTTG  927

seq1  GGGGCTGGAGTAGAAGTCACAAGGTCAAGGTAGGCATGGGAAGTGAGTGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGAGTAGAAGTCACAAGGTCAAGGTAGGCATGGGAAGTGAGTGT  977

seq1  GATCACGATGTGACAGTCTCAAAGAATAAAAAAAAATACTAGGTTATAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACGATGTGACAGTCTCAAAGAATAAAAAAAAATACTAGGTTATAAA  1027

seq1  AAGAAATTAAAATAGAGGCCTTAGTATATAATAAGAAGTGGTTTTATACA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTAAAATAGAGGCCTTAGTATATAATAAGAAGTGGTTTTATACA  1077

seq1  GAAAAATGTACAAAATAATGATCATATTCTGAACATGAAGATGAGGGTAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGTACAAAATAATGATCATATTCTGAACATGAAGATGAGGGTAA  1127

seq1  GAAAGCCAAAGTGAATCAGAGCCAATGGTCTCTTGGGATCTGTATCATAT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCAAAGTGAATCAGAGCCAATGGTCTCTTGGGATCTGTATCATAT  1177

seq1  AGCTAAAGAATTC  1209
      |||||||||||||
seq2  AGCTAAAGAATTC  1190


seq1: chr17_59801729_59802030
seq2: B6Ng01-212N20.g_74_375

seq1  TAGAATCCCATCCCAGAGAGCATACACATTAATCATCACACACATTCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCCCATCCCAGAGAGCATACACATTAATCATCACACACATTCCAC  50

seq1  TGATTTTATTCAGATATACACACGTGAATTTGATATATTTGTTATGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTATTCAGATATACACACGTGAATTTGATATATTTGTTATGAAAG  100

seq1  TATCTTAAACCTTTTTCTTAGATGGCTGTATACAATTATCTATTATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAAACCTTTTTCTTAGATGGCTGTATACAATTATCTATTATATAT  150

seq1  ATATGTATATATATTATACACATATATAATATACACATTATATATAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATATATATTATACACATATATAATATACACATTATATATAACAT  200

seq1  ACATATTATATATATGCTATATATACATATATATCAGTACTATAATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTATATATATGCTATATATACATATATATCAGTACTATAATATAT  250

seq1  ATATATATATATTATATAGTGGATTAGTTATTATAATATATAGGTTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATTATATAGTGGATTAGTTATTATAATATATAGGTTTTTA  300

seq1  GG  302
      ||
seq2  GG  302


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