BAC Information

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BAC

Clone NameB6Ng01-214D20
Chromosome17 (Build37)
Map Location 24,793,300 - 24,808,747
singlet/doubletdoublet
Overlap geneNpw, Zfp598
Upstream geneBC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2
Downstream geneSyngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214D20.bB6Ng01-214D20.g
ACCGA031542GA031543
length1,013193
definitionB6Ng01-214D20.b B6Ng01-214D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,807,743 - 24,808,747)(24,793,300 - 24,793,492)
sequence
gaattctggaattcaggacatattcaaagggtaatacaagactcagtaag
ggacaagggtgaaggcgctaggttacaagtggagggaatcaggataaacg
gtgaggctgagctggacagctaccatctcaccccacttcccaaagagctc
ctgctgcccagcatggtggtacaagtctaagaggacgcccaggcttagcc
aggggcacagagtgtcaaaccacatcccagccagggcaagctaacagctc
atgtcaaaagcccctgccacagagctcttagaggtgtgaggctcaggaag
actgagggagggcagacactggctacagctgacatatgtatgtatgttca
ctcacttcctgagtgagacccagagcccaggccaggacgacgtacataag
gacctacaaaatgtctcccttcctagaaggaagctacaggtatgtgtgct
caaaacccgtgtcagaccttcccatcagcgtgtgcacgactggccagcaa
agccccagcaagaccctgagtaggacaccagccaaaagcttccagagatg
tttctaaaccccagatctcatccagtagggtaaggctccttccaccacac
tatgtctggggtcttctagtccctcttccccagtatgacatagatgctta
gggaatgttccagattccagctgagtcttttgacataaatatcaagaaag
aaaagctgggtgtgctgggtatggtggagaatgaccttagccctcaggag
gtagaggcaggtggatctgtgtgacttcaaggccagtctggttctagaga
atgagttccaggactgccagagctacaggccctgtctcaaatacgggata
tggtggtgcactgcctttaatctcagaaatcaggaagctagaatactggt
ttctatattaaaagtttctaggccagttctgtgattttatagtgagaccc
tatcttctcaagaaagaaaaaaggtcataatgaaatgaatataaaaaaaa
aaactcaaaattt
caacagcagatggggagggagatttgaggagtcccagcacttaggtctga
gaaaagacagatgctagaagtttggagatgcagcagagggtgaggggtct
agttgtgtgaagctggatgaagcccaaagatgtgcatgcatgggtgtgag
tgtggtctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24807743_24808747
seq2: B6Ng01-214D20.b_50_1062 (reverse)

seq1  AAATTTTGAGTTTTTTTTTTTTTTTTTCTTTTCTTTCTGACC-TTTTTCT  49
      |||||||||| ||||||||||| | ||| |||| || ||||| |||||||
seq2  AAATTTTGAG-TTTTTTTTTTTATATTCATTTCATTATGACCTTTTTTCT  49

seq1  TTCTCGTTGAGATAGGGTCTCACTATGTAGTCCTGG--CTGGCCT-GGAA  96
      |||| |   |||||||||||||||||  | ||   |  ||||||| | ||
seq2  TTCTTGAGAAGATAGGGTCTCACTATAAAATCACAGAACTGGCCTAGAAA  99

seq1  CTTGTTATGTAG-AACCAGTA-TCT-GCCTCCTGATTTCTGAGATTAAAG  143
      ||| | || ||| |||||||| ||| || |||||||||||||||||||||
seq2  CTTTTAATATAGAAACCAGTATTCTAGCTTCCTGATTTCTGAGATTAAAG  149

seq1  GCAGTGCACCACCATATCCCGTATTTGAGACAGGGCCTGTAGCTCTGGCA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCACCACCATATCCCGTATTTGAGACAGGGCCTGTAGCTCTGGCA  199

seq1  GTCCTGGAACTCATTCTCTAG-ACCAGACTGGCCTTGAAGTCACACAGAT  242
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTCCTGGAACTCATTCTCTAGAACCAGACTGGCCTTGAAGTCACACAGAT  249

seq1  CCACCTGCCTCTACCTCCTGAGGGCT-AGGTCATTCTCCACCATACCCAG  291
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCACCTGCCTCTACCTCCTGAGGGCTAAGGTCATTCTCCACCATACCCAG  299

seq1  CACACCCAGCTTTTCTTTCTTGATATTTATGTCAAAAGACTCAGCTGGAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCAGCTTTTCTTTCTTGATATTTATGTCAAAAGACTCAGCTGGAA  349

seq1  TCTGGAACATTCCCTAAGCATCTATGTCATACTGGGGAAGAGGGACTAGA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAACATTCCCTAAGCATCTATGTCATACTGGGGAAGAGGGACTAGA  399

seq1  AGACCCCAGACATAGTGTGGTGGAAGGAGCCTTACCCTACTGGATGAGAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCAGACATAGTGTGGTGGAAGGAGCCTTACCCTACTGGATGAGAT  449

seq1  CTGGGGTTTAGAAACATCTCTGGAAGCTTTTGGCTGGTGTCCTACTCAGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTTTAGAAACATCTCTGGAAGCTTTTGGCTGGTGTCCTACTCAGG  499

seq1  GTCTTGCTGGGGCTTTGCTGGCCAGTCGTGCACACGCTGATGGGAAGGTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCTGGGGCTTTGCTGGCCAGTCGTGCACACGCTGATGGGAAGGTC  549

seq1  TGACACGGGTTTTGAGCACACATACCTGTAGCTTCCTTCTAGGAAGGGAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACGGGTTTTGAGCACACATACCTGTAGCTTCCTTCTAGGAAGGGAG  599

seq1  ACATTTTGTAGGTCCTTATGTACGTCGTCCTGGCCTGGGCTCTGGGTCTC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGTAGGTCCTTATGTACGTCGTCCTGGCCTGGGCTCTGGGTCTC  649

seq1  ACTCAGGAAGTGAGTGAACATACATACATATGTCAGCTGTAGCCAGTGTC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGAAGTGAGTGAACATACATACATATGTCAGCTGTAGCCAGTGTC  699

seq1  TGCCCTCCCTCAGTCTTCCTGAGCCTCACACCTCTAAGAGCTCTGTGGCA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCCCTCAGTCTTCCTGAGCCTCACACCTCTAAGAGCTCTGTGGCA  749

seq1  GGGGCTTTTGACATGAGCTGTTAGCTTGCCCTGGCTGGGATGTGGTTTGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTTTGACATGAGCTGTTAGCTTGCCCTGGCTGGGATGTGGTTTGA  799

seq1  CACTCTGTGCCCCTGGCTAAGCCTGGGCGTCCTCTTAGACTTGTACCACC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTGCCCCTGGCTAAGCCTGGGCGTCCTCTTAGACTTGTACCACC  849

seq1  ATGCTGGGCAGCAGGAGCTCTTTGGGAAGTGGGGTGAGATGGTAGCTGTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGGCAGCAGGAGCTCTTTGGGAAGTGGGGTGAGATGGTAGCTGTC  899

seq1  CAGCTCAGCCTCACCGTTTATCCTGATTCCCTCCACTTGTAACCTAGCGC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGCCTCACCGTTTATCCTGATTCCCTCCACTTGTAACCTAGCGC  949

seq1  CTTCACCCTTGTCCCTTACTGAGTCTTGTATTACCCTTTGAATATGTCCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCCTTGTCCCTTACTGAGTCTTGTATTACCCTTTGAATATGTCCT  999

seq1  GAATTCCAGAATTC  1005
      ||||||||||||||
seq2  GAATTCCAGAATTC  1013

seq1: chr17_24793300_24793492
seq2: B6Ng01-214D20.g_71_263

seq1  CAACAGCAGATGGGGAGGGAGATTTGAGGAGTCCCAGCACTTAGGTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCAGATGGGGAGGGAGATTTGAGGAGTCCCAGCACTTAGGTCTGA  50

seq1  GAAAAGACAGATGCTAGAAGTTTGGAGATGCAGCAGAGGGTGAGGGGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACAGATGCTAGAAGTTTGGAGATGCAGCAGAGGGTGAGGGGTCT  100

seq1  AGTTGTGTGAAGCTGGATGAAGCCCAAAGATGTGCATGCATGGGTGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGTGAAGCTGGATGAAGCCCAAAGATGTGCATGCATGGGTGTGAG  150

seq1  TGTGGTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  193
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  193