BAC Information

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BAC

Clone NameB6Ng01-214G10
Chromosome17 (Build37)
Map Location 35,103,297 - 35,267,088
singlet/doubletdoublet
Overlap geneHspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom
Upstream geneVps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b
Downstream geneLOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214G10.bB6Ng01-214G10.g
ACCGA031659GA031660
length8261,152
definitionB6Ng01-214G10.b B6Ng01-214G10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,103,297 - 35,104,122)(35,265,914 - 35,267,088)
sequence
gaattcatttggcttacacttccacattgtagtccatcatcgaaggaagt
caggacaggaactcaggggaggaaacctagaggtagaagccaatgcagag
gccatggaaggatgctgttactggcttgcttggcctactttcttatagaa
cccaccaccagcccaagaatagtctcatccacaatgggctggtcccttcc
ctatcaatctaattaagaaaatgctttacagcaaatcccatggaagaact
cactcagttgaggttccctcctttcagatcactctagcttgtgtcaaagt
tgccataaaattatccggctcaagccggacggtggtggtgcacaccttta
atcccagcacttgggaggcagaggcaggcggatttttgagttcgaggcca
gcctggtctacagagtgagttccaggacagccagggctatacagagaaac
cctgtctcgaaaaaaccaacaaaacaaaacaaaacaaaaaaaacaaaaaa
accctatccagctcagtaaggattaataaagcaacatacaagaggtcccg
aaaaagtgtctactctgttacaccacaccgatgttgagatcagaggagtg
ttcactggaatacttaaaacatgggcaacaaaaactgtgaagtggcccag
caagatgactcagtaggtacaagtgtttgtacacaaacctgacttccttg
agttcaatactccagagcccagtgaaagaaaactgactccccaagttatc
ctctaacctgtacatgtaccaaacccaccctccccccccactctctctct
ctcttctctctctctctctctctttc
gaattccagtctctgacctcttgcttggacttcaaagccttcttagtgac
tcccaggaatcaaggtgaggggttgaagtcaccaagtctcctgtgggtaa
agagctctgtgcaatgtcagcaggggccgtggccaaaggcagacattatc
agaatgggtacactgacccctctaattcttatgggctagaatggtaccag
aaggactcatgtgcagttaggaatagtgacacacactgtaacctctgcca
cacagctggcagaggcagaagaattgccacagatttaaagccagtctggt
atacaagtgagtttcaggacagccaggactatatatatagtgaggctgtc
tttcaaaaataaaaacgaggggctggagagatagctcagcagttaagagc
actgactgctcttccaacagtcctgagttcaaatcccagccaccacatgg
tggctcaaccatctgtaatgagatctgatgccctcttctggggtgtctga
agacagctagtgtacttacataaataaagaaatctttgggcaggagagag
cggggccagacaggcggggccagagagagaagaaaaaaatgtctgaagtg
tacttacatataataaataaatcttaaaaaaaatttaaaaaaagaggtga
aagataggtttcttagaatttagagcagtggtcttcaaccttccaaacgc
cctttaacacggttcttcatgttgtggtgacaccccaccccaccccccaa
ccgtaaaactattttgttgctcttttgctacttttatgaatcatttaagt
atctcacatgcagggtatctgtacgaaacccctgtgaaagggtggtttgt
cgtcccccccaaggggtcatgacccacagctggagaaccaccgctttaga
taagggaggagagggccagatgtagagtctcctaccttactccagtgcca
acggcactcctcccctggacgaccaccctcttactctctctctccccaca
gagcctgcccgctgtcagcaagtgaccagtgacttcaccgtgtctagacg
acagaataggagccagctcgagtgagagccagcgactctgcccccttcgt
gataattaagatgattgtccagtcctatctctgtttgtctggcgaacatc
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_35103297_35104122
seq2: B6Ng01-214G10.b_43_868

seq1  GAATTCATTTGGCTTACACTTCCACATTGTAGTCCATCATCGAAGGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGGCTTACACTTCCACATTGTAGTCCATCATCGAAGGAAGT  50

seq1  CAGGACAGGAACTCAGGGGAGGAAACCTAGAGGTAGAAGCCAATGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGGAACTCAGGGGAGGAAACCTAGAGGTAGAAGCCAATGCAGAG  100

seq1  GCCATGGAAGGATGCTGTTACTGGCTTGCTTGGCCTACTTTCTTATAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGAAGGATGCTGTTACTGGCTTGCTTGGCCTACTTTCTTATAGAA  150

seq1  CCCACCACCAGCCCAAGAATAGTCTCATCCACAATGGGCTGGTCCCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACCAGCCCAAGAATAGTCTCATCCACAATGGGCTGGTCCCTTCC  200

seq1  CTATCAATCTAATTAAGAAAATGCTTTACAGCAAATCCCATGGAAGAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAATCTAATTAAGAAAATGCTTTACAGCAAATCCCATGGAAGAACT  250

seq1  CACTCAGTTGAGGTTCCCTCCTTTCAGATCACTCTAGCTTGTGTCAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGTTGAGGTTCCCTCCTTTCAGATCACTCTAGCTTGTGTCAAAGT  300

seq1  TGCCATAAAATTATCCGGCTCAAGCCGGACGGTGGTGGTGCACACCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAAAATTATCCGGCTCAAGCCGGACGGTGGTGGTGCACACCTTTA  350

seq1  ATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTTTGAGTTCGAGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTTTGAGTTCGAGGCCA  400

seq1  GCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAAC  450

seq1  CCTGTCTCGAAAAAACCAACAAAACAAAACAAAACAAAAAAAACAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCGAAAAAACCAACAAAACAAAACAAAACAAAAAAAACAAAAAA  500

seq1  ACCCTATCCAGCTCAGTAAGGATTAATAAAGCAACATACAAGAGGTCCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTATCCAGCTCAGTAAGGATTAATAAAGCAACATACAAGAGGTCCCG  550

seq1  AAAAAGTGTCTACTCTGTTACACCACACCGATGTTGAGATCAGAGGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGTCTACTCTGTTACACCACACCGATGTTGAGATCAGAGGAGTG  600

seq1  TTCACTGGAATACTTAAAACATGGGCAACAAAAACTGTGAAGTGGCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGGAATACTTAAAACATGGGCAACAAAAACTGTGAAGTGGCCCAG  650

seq1  CAAGATGACTCAGTAGGTACAAGTGTTTGTACACAAACCTGACTTCC-TG  699
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAAGATGACTCAGTAGGTACAAGTGTTTGTACACAAACCTGACTTCCTTG  700

seq1  AGTTCAATACTCCAGAGCCCAGTGAAAGAAAACTGACTCCCCAAGTTATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAATACTCCAGAGCCCAGTGAAAGAAAACTGACTCCCCAAGTTATC  750

seq1  CTCTAACCTGTACATGTACCAAACCCACCCTCCCCCCCCACTCTCTCTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACCTGTACATGTACCAAACCCACCCTCCCCCCCCACTCTCTCTCT  800

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTC  826
      |||| ||||||||||||||||||| ||
seq2  CTCT-TCTCTCTCTCTCTCTCTCTTTC  826

seq1: chr17_35265914_35267088
seq2: B6Ng01-214G10.g_64_1215 (reverse)

seq1  TTGATG-TCTGCAGACAAAACCCAGGAGATGAGGACTGACAAATCATCTT  49
      |||||| ||  ||||||||   || ||||| |||||||   |||||||||
seq2  TTGATGTTCGCCAGACAAA---CA-GAGAT-AGGACTGGACAATCATCTT  45

seq1  TATTATCCACGAGAGGGGGCAGGAGTCGCTGGCTTCTCCACTCGAAGCTG  99
       ||||| ||||| |||||||| ||||||||||| ||| |||||| |||| 
seq2  AATTAT-CACGA-AGGGGGCA-GAGTCGCTGGC-TCT-CACTCG-AGCT-  88

seq1  GGCTCCTATCTTGTCTGTCTAGGACACGGGTGAAGTCACTGGTCACTTGC  149
      |||||||||  |||| ||||| ||||| ||||||||||||||||||||||
seq2  GGCTCCTATTCTGTC-GTCTA-GACAC-GGTGAAGTCACTGGTCACTTGC  135

seq1  TGGACAGCGGGCAGGCCTCTGTGGGGGGAGGAGGGAGAGAGTAAGAGGGT  199
      | ||||||||||||| ||||||||     |||| ||||||||||||||||
seq2  T-GACAGCGGGCAGG-CTCTGTGG-----GGAGAGAGAGAGTAAGAGGGT  178

seq1  GGTCGTCCAGGGGAGGAGTGCCGTTGGCACTGGAGTAAGGTAGGAGACTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGTCCAGGGGAGGAGTGCCGTTGGCACTGGAGTAAGGTAGGAGACTC  228

seq1  TACATCTGGCCCTCTCCTCCCTTTATCTAAAGCGGTGGTTCTCCAGCTGT  299
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TACATCTGGCCCTCTCCTCCC-TTATCTAAAGCGGTGGTTCTCCAGCTGT  277

seq1  GGGTCATGACCCCTTGGGGGGGGACGACAAACCACCCTTTCACAGGGGTT  349
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGGTCATGACCCCTT-GGGGGGGACGACAAACCACCCTTTCACAGGGGTT  326

seq1  TCGTACAGATACCCTGCATGTGAGATACTTAAATGATTCATAAAAGTAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTACAGATACCCTGCATGTGAGATACTTAAATGATTCATAAAAGTAGC  376

seq1  AAAAGAGCAACAAAATAGTTTTACGGTTGGGGGGTGGGGTGGGGTGTCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCAACAAAATAGTTTTACGGTTGGGGGGTGGGGTGGGGTGTCAC  426

seq1  CACAACATGAAGAACCGTGTTAAAGGGCGTTTGGAAGGTTGAAGACCACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACATGAAGAACCGTGTTAAAGGGCGTTTGGAAGGTTGAAGACCACT  476

seq1  GCTCTAAATTCTAAGAAACCTATCTTTCACCTCTTTTTTTAAATTTTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAATTCTAAGAAACCTATCTTTCACCTCTTTTTTTAAATTTTTTT  526

seq1  TAAGATTTATTTATTATATGTAAGTACACTTCAGACATTTTTTTCTTCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTATTTATTATATGTAAGTACACTTCAGACATTTTTTTCTTCTC  576

seq1  TCTCTGGCCCCGCCTGTCTGGCCCCGCTCTCTCCTGCCCAAAGATTTCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGCCCCGCCTGTCTGGCCCCGCTCTCTCCTGCCCAAAGATTTCTT  626

seq1  TATTTATGTAAGTACACTAGCTGTCTTCAGACACCCCAGAAGAGGGCATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGTAAGTACACTAGCTGTCTTCAGACACCCCAGAAGAGGGCATC  676

seq1  AGATCTCATTACAGATGGTTGAGCCACCATGTGGTGGCTGGGATTTGAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCATTACAGATGGTTGAGCCACCATGTGGTGGCTGGGATTTGAAC  726

seq1  TCAGGACTGTTGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCTATCTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACTGTTGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCTATCTCT  776

seq1  CCAGCCCCTCGTTTTTATTTTTGAAAGACAGCCTCACTATATATATAGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCTCGTTTTTATTTTTGAAAGACAGCCTCACTATATATATAGTC  826

seq1  CTGGCTGTCCTGAAACTCACTTGTATACCAGACTGGCTTTAAATCTGTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTCCTGAAACTCACTTGTATACCAGACTGGCTTTAAATCTGTGG  876

seq1  CAATTCTTCTGCCTCTGCCAGCTGTGTGGCAGAGGTTACAGTGTGTGTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTCTGCCTCTGCCAGCTGTGTGGCAGAGGTTACAGTGTGTGTCA  926

seq1  CTATTCCTAACTGCACATGAGTCCTTCTGGTACCATTCTAGCCCATAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTAACTGCACATGAGTCCTTCTGGTACCATTCTAGCCCATAAGA  976

seq1  ATTAGAGGGGTCAGTGTACCCATTCTGATAATGTCTGCCTTTGGCCACGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGGGGTCAGTGTACCCATTCTGATAATGTCTGCCTTTGGCCACGG  1026

seq1  CCCCTGCTGACATTGCACAGAGCTCTTTACCCACAGGAGACTTGGTGACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTGACATTGCACAGAGCTCTTTACCCACAGGAGACTTGGTGACT  1076

seq1  TCAACCCCTCACCTTGATTCCTGGGAGTCACTAAGAAGGCTTTGAAGTCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCCTCACCTTGATTCCTGGGAGTCACTAAGAAGGCTTTGAAGTCC  1126

seq1  AAGCAAGAGGTCAGAGACTGGAATTC  1175
      ||||||||||||||||||||||||||
seq2  AAGCAAGAGGTCAGAGACTGGAATTC  1152