BAC Information

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BAC

Clone NameB6Ng01-214I09
Chromosome17 (Build37)
Map Location 14,770,328 - 14,771,443
singlet/doubletsinglet
Overlap genenone
Upstream geneTcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856
Downstream geneThbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214I09.bB6Ng01-214I09.g
ACCGA031749GA031750
length1,1071,230
definitionB6Ng01-214I09.b B6Ng01-214I09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccataaattcattgtttttaatagctgagtagtactccattgtgt
aaatgtaccacatattctatatccattcttctgttgaggggcatctgggt
tctttccagcttctggctattataaataaggctgctatgaacatagtgga
gcatgtgttctcattatcaattggaacttctgggtatatacccaagagag
gcatatacaatttgccatcttaatgcaggtcagcacatgtgaaatgcaca
gtgtcattggtgtagtgaaactgctgcctttcctttagggagctcttccc
tccttgaaaatgccctctcccatggctcccccttcaagcctggctctagg
aaaactcacagtgctttctaccgaaagtatcctcttgtatctctattgga
gatgaagtctcatctgtgttctttctaacattgtaatagtttcaaatcat
ttttataacagtgtggtccaatagtttcagtgttatttatcttcattgca
ttgcatggtaaatgatgccactcctactagcatggtatgaccaataggcc
atcagtattctggccacccatggccagggtgcctgtacagctgacaactg
gctcaataccagactttcctataatctgaatattgaggatgtggttacat
aaataagcatacggaaacattttcatgtatctcgtgattaaacagcatct
aaaaatgtgacgtataatcaataaatattcacagaatagctcaatcaaca
aatacaatagttaccgatagtcaaaagtaatttagtcatttttagattta
acaggaaaatcctttaataataaaatttttaaaatttatttgagtaactc
attggctgactctatagtcctacttgttctgaaaatgtcttttcactcaa
caacactctccgtcatacatatagattttaattggcagcctctacccaca
aaagtcagtgtgaggggaagcacctagcctggcagagacttgaagtgcca
gggttgggggacacccaggggtcccccacctgctcagaggagaggagaga
gaaatggaggaagatgtgatggggggagaccaggaggtgacgatgagatg
taagtga
gaattccaggcctgctatgatgaaggttttggctcagttcattccaatgt
tgtccctacttgggagacacctctcatgggccccttggaggagactgggg
tgtttcagagccagttttgttctttctgtgcagatttcctatggctgatg
tgcctcaacctgtacttttgccccagccttggtgtgaatctctggatgac
ttgactgtgtaaagatacaaccctccggcttggttttctctatcctctcc
atctttctgtgggacttcactgtgggactctcctgggctgtagaatgtct
tttaaccctatttattttctcaatctgtccaaaagctttttggtttgctg
taactccgtttcaacttttgcttcttgccagtccttttggggtcacagtc
aaaacctcagcggctcagatcatttatctggagcattttcccccttggtt
tcctctaggagctttaggaatttgatctgcactctccgatcgttttgtgt
tgacttttacatgatctgagagtaaggggcggaattcatcgttttacata
tgctagtagtgtactgtccctccagcaccagccatcggatcaattttgtt
gatcaatattgacattaaactttacatttcctcaagatccaaaattcata
ggctggaaaaacacaagaatctattcatgtcttctgatcatccatttttc
tgctataatagactttaataatctatatttctgtgttatcaatgataatg
tatcctgtttaggtatataaattgatgtaattgcttctttcttttttctt
tgtttatctaaatgtttagtgattttgtgtttacaaatttctgatttatt
gattttttatattatcctttagtctcaattttacttaattctgctctgat
atttattatttattaattttaggtttcattattcttttatttagttgttt
gggttgtactatgtctaactaggttaactgatgtgaacagaccccatggc
caaggcactctcttataggacagcatttaactgggagctggattcaggtc
agaggtcagtccattattcatcagcatgacatggcaacttaagctggcat
gtgcaggtagagctgaagttttacccttccttgtgaggccgctagagaac
gtgcttcaagtgtttagaaagttcttgcacctcatgacaattctgctcaa
ggcgacatgtaacctatgatgtgacatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_14770328_14771443
seq2: B6Ng01-214I09.b_44_1150

seq1  GAATTCCATAAATTCATTGTTTTTAATAGCTGAGTAGTACTCCATTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAATTCATTGTTTTTAATAGCTGAGTAGTACTCCATTGTGT  50

seq1  AAATGTACCACATATTCTATATCCATTCTTCTGTTGAGGGGCATCTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACCACATATTCTATATCCATTCTTCTGTTGAGGGGCATCTGGGT  100

seq1  TCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGA  150

seq1  GCATGTGTTCTCATTATCAATTGGAACTTCTGGGTATATACCCAAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTTCTCATTATCAATTGGAACTTCTGGGTATATACCCAAGAGAG  200

seq1  GCATATACAATTTGCCATCTTAATGCAGGTCAGCACATGTGAAATGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATACAATTTGCCATCTTAATGCAGGTCAGCACATGTGAAATGCACA  250

seq1  GTGTCATTGGTGTAGTGAAACTGCTGCCTTTCCTTTAGGGAGCTCTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATTGGTGTAGTGAAACTGCTGCCTTTCCTTTAGGGAGCTCTTCCC  300

seq1  TCCTTGAAAATGCCCTCTCCCATGGCTCCCCCTTCAAGCCTGGCTCTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAAAATGCCCTCTCCCATGGCTCCCCCTTCAAGCCTGGCTCTAGG  350

seq1  AAAACTCACAGTGCTTTCTACCGAAAGTATCCTCTTGTATCTCTATTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCACAGTGCTTTCTACCGAAAGTATCCTCTTGTATCTCTATTGGA  400

seq1  GATGAAGTCTCATCTGTGTTCTTTCTAACATTGTAATAGTTTCAAATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGTCTCATCTGTGTTCTTTCTAACATTGTAATAGTTTCAAATCAT  450

seq1  TTTTATAACAGTGTGGTCCAATAGTTTCAGTGTTATTTATCTTCATTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAACAGTGTGGTCCAATAGTTTCAGTGTTATTTATCTTCATTGCA  500

seq1  TTGCATGGTAAATGATGCCACTCCTACTAGCATGGTATGACCAATAGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGGTAAATGATGCCACTCCTACTAGCATGGTATGACCAATAGGCC  550

seq1  ATCAGTATTCTGGCCACCCATGGCCAGGGTGCCTGTACAGCTGACAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTATTCTGGCCACCCATGGCCAGGGTGCCTGTACAGCTGACAACTG  600

seq1  GCTCAATACCAGACTTTCCTATAATCTGAATATTGAGGATGTGGTTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATACCAGACTTTCCTATAATCTGAATATTGAGGATGTGGTTACAT  650

seq1  AAATAAGCATACGGAAACATTTTCATGTATCTCGTGATTAAACAGCATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGCATACGGAAACATTTTCATGTATCTCGTGATTAAACAGCATCT  700

seq1  AAAAATGTGACGTATAATCAATAAATATTCACAGAATAGCTCAATCAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTGACGTATAATCAATAAATATTCACAGAATAGCTCAATCAACA  750

seq1  AATACAATAGTTACCGATAGTCAAAAGTAATTTAGTCATTTTTAGATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAATAGTTACCGATAGTCAAAAGTAATTTAGTCATTTTTAGATTTA  800

seq1  ACAGGAAAATCCTTTAATAATAAAATTTTTAAAATTTATTTGAGTAACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAATCCTTTAATAATAAAATTTTTAAAATTTATTTGAGTAACTC  850

seq1  ATTGGCTGACTCTATAGTCCTACTTGTTCTGAAAATGTCTTTTCACTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTGACTCTATAGTCCTACTTGTTCTGAAAATGTCTTTTCACTCAA  900

seq1  CAACACTCTCCGTCATACATATAGATTTTAATTGGCAGCCTCTACCCACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTCTCCGTCATACATATAGATTTTAATTGGCAGCCTCTACCCACA  950

seq1  AAAGTCAGTGTGAGGGGAAGCACCTAGCCTGGCAGAGACTTGAAGTGCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGTGTGAGGGGAAGCACCTAGCCTGGCAGAGACTTGAAGTGCCA  1000

seq1  GGGTTGGGGGACACCCAGGGG-CCCCCACCTGCTCAGAGGAGAAGGAGAG  1049
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  GGGTTGGGGGACACCCAGGGGTCCCCCACCTGCTCAGAGGAG-AGGAGAG  1049

seq1  AAGAAATGGAGGAAAGATTGTGGAAGGGGGAGACCAGGAGGGTGACAGAA  1099
       ||||||||||| |||| ||||   |||||||||||||| |||||| || 
seq2  -AGAAATGGAGG-AAGA-TGTGATGGGGGGAGACCAGGA-GGTGAC-GA-  1093

seq1  AGAGGGATGTAAAGTGA  1116
         | ||||| ||||||
seq2  --TGAGATGT-AAGTGA  1107