BAC Information

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BAC

Clone NameB6Ng01-215F22
Chromosome17 (Build37)
Map Location 47,076,519 - 47,077,512
singlet/doubletsinglet
Overlap geneUbr2
Upstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2
Downstream geneLOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215F22.bB6Ng01-215F22.g
ACCGA032358GA032359
length1,0071,185
definitionB6Ng01-215F22.b B6Ng01-215F22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactctgtagaccaggctaacctcaaactcagagatctgcccgcc
tttgcttcctgtgtgcttgggttaaaggcatgtgtcaccatggccaacct
ctttctttttaagtaagacaaagtcaaatacgctatgtacatgacttgta
agaggtccctggtagactacgactccatgagcaggttggtgtcacatgac
tcttaaaccagttacagtccccgagactcagcctgggcctctgcaaatga
gcaaagctacagtttacatcctgggctgagcgtgagcctggacagagcag
tcgaggtcaggcggctcttccctagagatggactcacagtagtgaccgcc
agcgctgatgccagtcaagcagtctttaggcaatgctgcaccctcgtgct
ggcctcctgtgactagtgccagcaccagcagggatcagagacagagccat
ggtcctacaatactctcctccatggggttggaaaagaaaagaggagcatg
gaggggctgcctatcaactgtcactcaagaacagacatgccacgacgaca
ctggaatttcacgtggtacaaagagaactgactcccaaagctgtcctctg
atctcaagtgcccgtgagcgcacccccacccccaccataataacattgtt
gttgtttttttttttttttttaaaaaaagaagttcttacactgttagttt
ctgctgttttacgtctgagggactggggctgcagagatgagtcccatagc
taagagcatttgttgctcttgctgagggaccggggtttaattcttgccac
tcatgaggtgactcacaagcatctctaactacaacccctgcgcttggggt
tccaacaggtgctcacggtgcgccaatatatgcccagcgaaagattccca
cttataattaaaataaaactaagaaaaaatcctttaaaatccttgaagaa
accctagcttctgagtaaatatggtagcgcggaccaagccaaatactgag
actccag
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagtccccgccctgcgtagtgcgtcagca
gtgcgcagagaggcagtgcgcagactcattcattcccagagaggaacaaa
ggaaaatacaacaggcatttccggtctttgaaggagccgagggtgggcgt
gtccacgctccggtagaatacttacaaattaaaaaaattgccgagtcggt
ccgtaaatacggaaccaatgctaattttaccttggtgcagttagacaggc
tcgccggcatggcactaactcctgctgactggcaaacggttgtaaaagcc
gctctccctagtatgggcaaatatatggaatggagagcgctttggcacga
agctgcacaagcgcaggcccgagcaaacgcagctgctttgactccagagc
agagagattggacttttgacttgttaacgggtcagggagcttattctgct
gatcagacaaactaccattggggagcttatgcccagatttcttccacggc
tattagggcctggaaggcgctctctcgagcaggtgaaaccactgggcagt
taacaaagataatccagggacctcaggaatccttctcagattttgtggcc
agaatgacagaggcagcagagcgtatttttggagagtcagagcaagctgc
gcctctgatagaacagctaatctatgagcaagccacaagggagtgccgag
cggccatagctccaagaaagaacaaggcttacaagactggctcagggtct
gtcgagagcttgggggacctctcaccaatgcaagctagcggccgccattc
ttccatcctcagaccgctccatgagcagaaatgattcggaggacatgttt
tattgcggaaagcctgggcatttagaaaggatggcagagctccagattaa
ccaggaggacctctcactctttgctctaagtgtgcagggctatcttaggc
tgacaggtcgttctggtaaggcatagggcaagtccttcctacctgatggc
tactacgctatgtggccaaaaacgcgggatccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_47076519_47077512
seq2: B6Ng01-215F22.b_48_1054

seq1  GAATTCACTCTGTAGACCAGGCTAACCTCAAACTCAGAGATCTGCCCGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTAACCTCAAACTCAGAGATCTGCCCGCC  50

seq1  TTTGCTTCCTGTGTGCTTGGGTTAAAGGCATGTGTCACCATGGCCAACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCCTGTGTGCTTGGGTTAAAGGCATGTGTCACCATGGCCAACCT  100

seq1  CTTTCTTTTTAAGTAAGACAAAGTCAAATACGCTATGTACATGACTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTTAAGTAAGACAAAGTCAAATACGCTATGTACATGACTTGTA  150

seq1  AGAGGTCCCTGGTAGACTACGACTCCATGAGCAGGTTGGTGTCACATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCCCTGGTAGACTACGACTCCATGAGCAGGTTGGTGTCACATGAC  200

seq1  TCTTAAACCAGTTACAGTCCCCGAGACTCAGCCTGGGCCTCTGCAAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAACCAGTTACAGTCCCCGAGACTCAGCCTGGGCCTCTGCAAATGA  250

seq1  GCAAAGCTACAGTTTACATCCTGGGCTGAGCGTGAGCCTGGACAGAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCTACAGTTTACATCCTGGGCTGAGCGTGAGCCTGGACAGAGCAG  300

seq1  TCGAGGTCAGGCGGCTCTTCCCTAGAGATGGACTCACAGTAGTGACCGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGTCAGGCGGCTCTTCCCTAGAGATGGACTCACAGTAGTGACCGCC  350

seq1  AGCGCTGATGCCAGTCAAGCAGTCTTTAGGCAATGCTGCACCCTCGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTGATGCCAGTCAAGCAGTCTTTAGGCAATGCTGCACCCTCGTGCT  400

seq1  GGCCTCCTGTGACTAGTGCCAGCACCAGCAGGGATCAGAGACAGAGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCTGTGACTAGTGCCAGCACCAGCAGGGATCAGAGACAGAGCCAT  450

seq1  GGTCCTACAATACTCTCCTCCATGGGGTTGGAAAAGAAAAGAGGAGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTACAATACTCTCCTCCATGGGGTTGGAAAAGAAAAGAGGAGCATG  500

seq1  GAGGGGCTGCCTATCAACTGTCACTCAAGAACAGACATGCCACGACGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCTGCCTATCAACTGTCACTCAAGAACAGACATGCCACGACGACA  550

seq1  CTGGAATTTCACGTGGTACAAAGAGAACTGACTCCCAAAGCTGTCCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTTCACGTGGTACAAAGAGAACTGACTCCCAAAGCTGTCCTCTG  600

seq1  ATCTCAAGTGCCCGTGAGCGCACCCCCACCCCCACCATAATAACATTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAGTGCCCGTGAGCGCACCCCCACCCCCACCATAATAACATTGTT  650

seq1  GTTGTTTTTTTTTTTTTTTTTAAAAAAAGAAGTTCTTACACTGTTAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTTTTTTTTTTTTTTAAAAAAAGAAGTTCTTACACTGTTAGTTT  700

seq1  CTGCTGTTTTACGTCTGAGGGACTGGGGCTGCAGAGATGAGT-CCATAGC  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGCTGTTTTACGTCTGAGGGACTGGGGCTGCAGAGATGAGTCCCATAGC  750

seq1  TAAGAGCATTTGTTGCTCTTGCTGA-GGACCGGGGTTTAATTCTTGCCAC  798
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAAGAGCATTTGTTGCTCTTGCTGAGGGACCGGGGTTTAATTCTTGCCAC  800

seq1  TCATGAGGTGACTCACAAGCATCTCTAACTACAACCCCAGCGCTAGGGGT  848
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  TCATGAGGTGACTCACAAGCATCTCTAACTACAACCCCTGCGCTTGGGGT  850

seq1  TCCAACAGGTGCTCACGGTGCG-CAATATATG-CCAGCGAAAGATTCACA  896
      |||||||||||||||||||||| ||||||||| |||||||||||||| ||
seq2  TCCAACAGGTGCTCACGGTGCGCCAATATATGCCCAGCGAAAGATTCCCA  900

seq1  CATATAAATTAAATAAAACTAAAAAAAAAT-CTTTAAAATCCT--GAGAA  943
      | ||||| | |||||||||||| ||||||| ||||||||||||   ||||
seq2  CTTATAATTAAAATAAAACTAAGAAAAAATCCTTTAAAATCCTTGAAGAA  950

seq1  A-CCTAGCTTCTGAGT-AATATGTAA--GGTGACAGAG-CAGATACTGAG  988
      | |||||||||||||| ||||||  |  |  |||  || || ||||||||
seq2  ACCCTAGCTTCTGAGTAAATATGGTAGCGCGGACCAAGCCAAATACTGAG  1000

seq1  AC-CCAG  994
      || ||||
seq2  ACTCCAG  1007