BAC Information

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BAC

Clone NameB6Ng01-215H15
Chromosome17 (Build37)
Map Location 41,898,543 - 42,008,729
singlet/doubletdoublet
Overlap genenone
Upstream geneCrisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
Downstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215H15.bB6Ng01-215H15.g
ACCGA032435GA032436
length1,072976
definitionB6Ng01-215H15.b B6Ng01-215H15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,007,650 - 42,008,729)(41,898,543 - 41,899,201)
sequence
gaattcatgtcattaatgaattcaggcattcattaaaccctgaattaata
caatatatttaacttaaatattgtggtaataagctggaattcttaagttt
taggttttaaagtatgtttttgttcaatttgtataaatgcttatgacctt
caaacacatgccaaaccactaataattcatgtaataattcaatggtgaaa
tcccttctttctgtaatgttagagctgtaagcttttctttgttgtgcatt
aatggtagaaaattaacatcctcgagatgagtgaaaaataatatcatgaa
gagagtcaggctgaaggagttcacagttttctgctcaataatgttaaaag
ggttgtatagagggtgaattaaaagtaaaaatactttctttttccttaca
aaagatctttaattatacttcaagcaaaattcaagtgaaatatggaaatt
agcatgtaatttttccaaatgcataattttaaaatcctctttctgtttaa
tgatctaaattctctttcttgaagagctttaaaggggcaaagcccagaag
agaaaatgatttagcttagttgcataaaacgtttccatatctctgaacat
ttatctaatgtccttgagcagcatgaagataatcaaatccttcttactat
aaacatggagttatttcgttgctacccaggtactacccttgctgttttaa
aagacaagagggaatcttcacactgggtaggaaaaaatcaaggcttgcct
ttttgtcaccatgaactgacattgtcaaaagcaggttacacagggccccc
aatggagaagctagagcaagcacccaaggagctgaatgggtttgcaacct
tataggtggaacaacaatatgaactaaccagtacccccagagctcgtatc
tctagctgcatatgtagcagaagatggcctagtcagccatcactgggaag
agaggccccttggtattgcaactttatatgcccagtacaggggatgccag
gaccagaatcagaagtgggtgggtagggaacaagcagaggagggtatagg
gaccttttggatagcatttgaa

gaattctattaacaaattgtaaaatatgctgagtaaaatagggatagctc
atcctatcccacataaacccttataatctgcagggagtgtggaataagta
ttattttcacagaaaaaagttcatcataaaggcaattgtttaagaaagag
gaatgttgattgcggcaccacctccagtaaggatctgtgtgacgagttcc
acgggctgaggcgtttgtcctcaaaagtgggaggcctcctagaaccagtt
gtagaactcttcccaggagaaaaattattgagctgtagttctcttgacta
cttatctatttcatgttttctattccttttcctgtatacgagatgttcct
gatagcctaggccaagatcttaagtgagtattatggctacaaaaccatcc
cttgaaatggagtcactaaacatgacctcctctctgggaaaaccagcgct
tcactttataaatcatgcataagatagtactgataaatataaactttcct
aacaataatattttattattgctcatgtgtcatcggaattaggttttggt
atattgcttaagaaagccttaattagaaagaattaaaacagtttaaattt
atgttttgaagagttacagaagaacaggaactagaggttaaatagtaact
gatcataaaaattcattagcttagccgggcagtggtggcgcacgccttta
atcccagcacttgggaggcagagacaggcaaatttctgagttcaaggcca
gcctggtctacagagtgagttccatgacagccaaagctatacagagaaac
cgtatctcaagctaactaactaactaactaaataataaatacataaataa
ataaataaatatttcattagcttattcttgggaatttggccactagtctt
agaagattattgtattttgatgtactaatgttcataaacatattcattct
gcctggatgttttactgaaaacaccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42007650_42008729
seq2: B6Ng01-215H15.b_45_1116 (reverse)

seq1  TTCAAATGCTATCCCAAAAGTTCCCTATACCCTCCTCCTGCCTTGTTCCC  50
      |||||||||||| ||||||| ||||||||||||||| ||| |||||| ||
seq2  TTCAAATGCTAT-CCAAAAGGTCCCTATACCCTCCT-CTG-CTTGTT-CC  46

seq1  CTACCCACCCACTTCTGATTCTTGGTCCTGGCATTCCCCTGTACTGGGGC  100
      ||||||||||||||||||||| ||||||||||| ||||||||||| ||||
seq2  CTACCCACCCACTTCTGATTC-TGGTCCTGGCA-TCCCCTGTACT-GGGC  93

seq1  ATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAGTGATGGCTGACT  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAG-TTGCAATACCAAGGGGCCTCTCTTCCCAGTGATGGCTGACT  142

seq1  AGGCCATCTTCTGCTACATATGCAGCTAGAGATACGAGCTCTGGGGGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATCTTCTGCTACATATGCAGCTAGAGATACGAGCTCTGGGGGTAC  192

seq1  TGGTTAGTTCATATTGTTGTTCCACCTATAAGGTTGCAAACCCCTTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGTTAGTTCATATTGTTGTTCCACCTATAAGGTTGCAAACCCATTCAGC  242

seq1  TCCTTGGGTGCTTGCTCTAGCTTCTCCATTGGGGGCCCTGTGTAACCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGGTGCTTGCTCTAGCTTCTCCATTGGGGGCCCTGTGTAACCTGC  292

seq1  TTTTGACAATGTCAGTTCATGGTGACAAAAAGGCAAGCCTTGATTTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACAATGTCAGTTCATGGTGACAAAAAGGCAAGCCTTGATTTTTTC  342

seq1  CTACCCAGTGTGAAGATTCCCTCTTGTCTTTTAAAACAGCAAGGGTAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAGTGTGAAGATTCCCTCTTGTCTTTTAAAACAGCAAGGGTAGTA  392

seq1  CCTGGGTAGCAACGAAATAACTCCATGTTTATAGTAAGAAGGATTTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTAGCAACGAAATAACTCCATGTTTATAGTAAGAAGGATTTGATT  442

seq1  ATCTTCATGCTGCTCAAGGACATTAGATAAATGTTCAGAGATATGGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCATGCTGCTCAAGGACATTAGATAAATGTTCAGAGATATGGAAAC  492

seq1  GTTTTATGCAACTAAGCTAAATCATTTTCTCTTCTGGGCTTTGCCCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGCAACTAAGCTAAATCATTTTCTCTTCTGGGCTTTGCCCCTTT  542

seq1  AAAGCTCTTCAAGAAAGAGAATTTAGATCATTAAACAGAAAGAGGATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTTCAAGAAAGAGAATTTAGATCATTAAACAGAAAGAGGATTTT  592

seq1  AAAATTATGCATTTGGAAAAATTACATGCTAATTTCCATATTTCACTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATGCATTTGGAAAAATTACATGCTAATTTCCATATTTCACTTGA  642

seq1  ATTTTGCTTGAAGTATAATTAAAGATCTTTTGTAAGGAAAAAGAAAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTTGAAGTATAATTAAAGATCTTTTGTAAGGAAAAAGAAAGTAT  692

seq1  TTTTACTTTTAATTCACCCTCTATACAACCCTTTTAACATTATTGAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTTTAATTCACCCTCTATACAACCCTTTTAACATTATTGAGCAG  742

seq1  AAAACTGTGAACTCCTTCAGCCTGACTCTCTTCATGATATTATTTTTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTGAACTCCTTCAGCCTGACTCTCTTCATGATATTATTTTTCAC  792

seq1  TCATCTCGAGGATGTTAATTTTCTACCATTAATGCACAACAAAGAAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCGAGGATGTTAATTTTCTACCATTAATGCACAACAAAGAAAAGC  842

seq1  TTACAGCTCTAACATTACAGAAAGAAGGGATTTCACCATTGAATTATTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCTCTAACATTACAGAAAGAAGGGATTTCACCATTGAATTATTAC  892

seq1  ATGAATTATTAGTGGTTTGGCATGTGTTTGAAGGTCATAAGCATTTATAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTATTAGTGGTTTGGCATGTGTTTGAAGGTCATAAGCATTTATAC  942

seq1  AAATTGAACAAAAACATACTTTAAAACCTAAAACTTAAGAATTCCAGCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAACAAAAACATACTTTAAAACCTAAAACTTAAGAATTCCAGCTT  992

seq1  ATTACCACAATATTTAAGTTAAATATATTGTATTAATTCAGGGTTTAATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCACAATATTTAAGTTAAATATATTGTATTAATTCAGGGTTTAATG  1042

seq1  AATGCCTGAATTCATTAATGACATGAATTC  1080
      ||||||||||||||||||||||||||||||
seq2  AATGCCTGAATTCATTAATGACATGAATTC  1072


seq1: chr17_41898543_41899201
seq2: B6Ng01-215H15.g_69_727

seq1  GAATTCTATTAACAAATTGTAAAATATGCTGAGTAAAATAGGGATAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTAACAAATTGTAAAATATGCTGAGTAAAATAGGGATAGCTC  50

seq1  ATCCTATCCCACATAAACCCTTATAATCTGCAGGGAGTGTGGAATAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATCCCACATAAACCCTTATAATCTGCAGGGAGTGTGGAATAAGTA  100

seq1  TTATTTTCACAGAAAAAAGTTCATCATAAAGGCAATTGTTTAAGAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCACAGAAAAAAGTTCATCATAAAGGCAATTGTTTAAGAAAGAG  150

seq1  GAATGTTGATTGCGGCACCACCTCCAGTAAGGATCTGTGTGACGAGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTGATTGCGGCACCACCTCCAGTAAGGATCTGTGTGACGAGTTCC  200

seq1  ACGGGCTGAGGCGTTTGTCCTCAAAAGTGGGAGGCCTCCTAGAACCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCTGAGGCGTTTGTCCTCAAAAGTGGGAGGCCTCCTAGAACCAGTT  250

seq1  GTAGAACTCTTCCCAGGAGAAAAATTATTGAGCTGTAGTTCTCTTGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACTCTTCCCAGGAGAAAAATTATTGAGCTGTAGTTCTCTTGACTA  300

seq1  CTTATCTATTTCATGTTTTCTATTCCTTTTCCTGTATACGAGATGTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTATTTCATGTTTTCTATTCCTTTTCCTGTATACGAGATGTTCCT  350

seq1  GATAGCCTAGGCCAAGATCTTAAGTGAGTATTATGGCTACAAAACCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCTAGGCCAAGATCTTAAGTGAGTATTATGGCTACAAAACCATCC  400

seq1  CTTGAAATGGAGTCACTAAACATGACCTCCTCTCTGGGAAAACCAGCGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAATGGAGTCACTAAACATGACCTCCTCTCTGGGAAAACCAGCGCT  450

seq1  TCACTTTATAAATCATGCATAAGATAGTACTGATAAATATAAACTTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTATAAATCATGCATAAGATAGTACTGATAAATATAAACTTTCCT  500

seq1  AACAATAATATTTTATTATTGCTCATGTGTCATCGGAATTAGGTTTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAATATTTTATTATTGCTCATGTGTCATCGGAATTAGGTTTTGGT  550

seq1  ATATTGCTTAAGAAAGCCTTAATTAGAAAGAATTAAAACAGTTTAAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGCTTAAGAAAGCCTTAATTAGAAAGAATTAAAACAGTTTAAATTT  600

seq1  ATGTTTTGAAGAGTTACAGAAGAACAGGAACTAGAGGTTAAATAGTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGAAGAGTTACAGAAGAACAGGAACTAGAGGTTAAATAGTAACT  650

seq1  GATCATAAA  659
      |||||||||
seq2  GATCATAAA  659


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