BAC Information

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BAC

Clone NameB6Ng01-215P24
Chromosome17 (Build37)
Map Location 35,872,627 - 35,873,279
singlet/doubletsinglet
Overlap genenone
Upstream geneC4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663
Downstream geneIer3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215P24.bB6Ng01-215P24.g
ACCGA032807GA032808
length1,051654
definitionB6Ng01-215P24.b B6Ng01-215P24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctcacctgtcttggagtagccggagttggtatttgagtcacag
tcctttttctagcctctgtcagccaccgtttttcatcccggagggtatat
ctcaggtagaccacttccatctgacatagctgggcttttttagcagaggc
ccggtaacccaactcacccagttctgctagcaatctcttggtcccctgcc
agcattctcttccgtggttgcagcaaggagcaacatattgaagcagagtt
acctgggagttttcagctcagaaggaggctaaatctcgatgtagagcctc
atttaaaagggtgggggagtttttgaactcctggggtaaccacatccagg
tcaattgtcctgtttgtccagtgtcaggatctctccactcaaagacgaat
atgggctggctggagggatgtaactttaggcaaaagaaagcatcttttaa
atcaagtactgtataccattttcgctccggagggagtgagctgaggaggt
tataaggattaggaacagttgggtgaatatcttggaccctcttattgacc
tctctcaggtcttggactggtcagtagtcactcgtgccaggtttctttac
cgacagtaaaggagtattccagggtgactggcaaggtaccaaaataccta
attgtaatagtctctgaatatgtggcctgattccatctcttgctttacgg
ctcattggatattgttgcactcctataggggttgcatccgtcttcagtcc
cacaaccacaggggggaactctgacagccattcccatgcctgcagtctct
gcccatgctctaggggaaagcagtcaaccagtcttttaggtctggcacct
ctgtttgctttatgccttcatgcaatcggtattctttcctcaagctgcag
ggctaagactacggaggttgggagatttcccaagttacttctcggccttt
ctaagtaaaatctgaactagggccttttaattttaattcagaagatctct
tccttagaagccgtgttggaactcaggaatgaaccaataatggaatgaac
t
gaattcagtccctggcagccacatggtaaaagtgagagctcactagtcca
ttcacctccacacacacaaaatgaaataaatggggaaaaaatgtgatttt
taaaaaaggactgttgggccgggcagtgatggcgctcacctttaatccca
gcacttgggaggcagaggcaggtgaatttctgagttcaaggccagcctgg
tctacagagtgagttccaggacagccaaggctacacagagaaaccctgtc
tcgaaactcccccccccccaaaaaaaaggactgttggtatcagtgataga
ccctcttccctttacataaattgttggggcagggtgatttgactccctgc
atgacagctgttggatccttcccaggtgtctccttaccttaactgacaga
ctgtcaaccagcagccagccaaactgccttttgttgaccatacccaactt
tcaactcagttcttaggttggtgaggagatgcagcagaagcagagacagt
gaggcagcagccactgctgcagcagctagggatgagtcgcattaatgagg
ggctggggggccatggaaggaaagaggaagtgggagagaggaaggagctg
aggctgaaggtagacggacggtgaaagaaccagagaaccctgtgggcctc
tgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_35872627_35873279
seq2: B6Ng01-215P24.g_68_721

seq1  GAATTCAGTCCCTGGCAGCCACATGGTAAAAGTGAGAGCTCACTAGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCCTGGCAGCCACATGGTAAAAGTGAGAGCTCACTAGTCCA  50

seq1  TTCACCTCCACACACACAAAATGAAATAAATGGGGAAAAAATGTGATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTCCACACACACAAAATGAAATAAATGGGGAAAAAATGTGATTTT  100

seq1  TAAAAAAGGACTGTTGGGCCGGGCAGTGATGGCGCTCACCTTTAATCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGGACTGTTGGGCCGGGCAGTGATGGCGCTCACCTTTAATCCCA  150

seq1  GCACTTGGGAGGCAGAGGCAGGTGAATTTCTGAGTTCAAGGCCAGCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGGAGGCAGAGGCAGGTGAATTTCTGAGTTCAAGGCCAGCCTGG  200

seq1  TCTACAGAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAACCCTGTC  250

seq1  TCGAAACTCCCCCCCCCCCAAAAAAAAGGACTGTTGGTATCAGTGATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAACTCCCCCCCCCCCAAAAAAAAGGACTGTTGGTATCAGTGATAGA  300

seq1  CCCTCTTCCCTTTACATAAATTGTTGGGGCAGGGTGATTTGACTCCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCCCTTTACATAAATTGTTGGGGCAGGGTGATTTGACTCCCTGC  350

seq1  ATGACAGCTGTTGGATCCTTCCCAGGTGTCTCCTTACCTTAACTGACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGCTGTTGGATCCTTCCCAGGTGTCTCCTTACCTTAACTGACAGA  400

seq1  CTGTCAACCAGCAGCCAGCCAAACTGCCTTTTGTTGACCATACCCAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAACCAGCAGCCAGCCAAACTGCCTTTTGTTGACCATACCCAACTT  450

seq1  TCAACTCAGTTCTTAGGTTGGTGAGGAGATGCAGCAGAAGCAGAGACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCAGTTCTTAGGTTGGTGAGGAGATGCAGCAGAAGCAGAGACAGT  500

seq1  GAGGCAGCAGCCACTGCTGCAGCAGCTAGGGATGAGTCGCATTAATGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCAGCCACTGCTGCAGCAGCTAGGGATGAGTCGCATTAATGAGG  550

seq1  GGCTGGGGGGCCATGGAAGGAAAGAGGAAGTGGGAGAGAGGAAGGAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGGGCCATGGAAGGAAAGAGGAAGTGGGAGAGAGGAAGGAGCTG  600

seq1  AGGCTGAAGGTAGACGGACGGTG-AAGAACCAGAGAACCCTGTGGGCCTC  649
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGCTGAAGGTAGACGGACGGTGAAAGAACCAGAGAACCCTGTGGGCCTC  650

seq1  TGTC  653
      ||||
seq2  TGTC  654