BAC Information

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BAC

Clone NameB6Ng01-217O13
Chromosome17 (Build37)4 (Build37)
Map Location 29,069,974 - 29,070,4774,787,454 - 4,788,598
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAnks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik
Downstream genePxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217O13.bB6Ng01-217O13.g
ACCGA034177GA034178
length1961,173
definitionB6Ng01-217O13.b B6Ng01-217O13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,069,974 - 29,070,477)(4,787,454 - 4,788,598)
sequence
caggacagccagggctatacagagaaaccctgtctcgaaaaacctatata
tatacatatatatatacatatatatatgtatatatatatgtatatatata
tatacatatatatatatatacatatatatatatatatatatatatgtata
tatatatgtatatatatgtgtatatatatatatatatatatatata
gaattccttaaaatgaacagcaatatataacatccagcttttaaaaccat
cctggaattaatatatttatattctatacttaaacattacaagttttggt
ttaaaaattagtaacaatattgcataaattagaatccaagttctagcttg
atattttgtaacatttctggagatacttttactgaataaataatctcaag
ttaatgaggtaaattagtcaaacactcatcacagattacagaacaaaaac
tgttgttctctatgaaaagtactaagtttattttcaattctcctatataa
atttaaaacaaatttgaaatagcttttcaatcatagacttacccttcaac
tcgataacaatcatattctattttatattttattgtaaaaattttgaaaa
taaatgaaaacatcacacactaaaactaaccagactttagaaccaacttt
agaacaattgtgttctgtgcccacttgttatactttacctgaaattaccc
aatctcttataggtgtccagcagacttcatcaaatacttctagtttatat
attttgcaatctaatatatgctttttatcagtatgtcagcattcttacta
caaaatctgatgtgactcaaaaaatgaaataaaatattcatctaacaaag
ggttttctcctctaacaaagtatgcaaaaacattgatggaaatccatgca
ggaaatatttgttaataatggtattcaagtgattatttatttctagttat
gctactaaatcaaatctttgagagtaaagatatctataccaagtatagtt
ttagattagatatgttgaacatctactacagaaagaattgtttcattttc
tttttccattgctatgataaaacactctgacaaaagaaactgaagggagg
aaagggtttaatcctgactcacaattctcatgtgcagtggatttatgggg
agtcccacacaagcagaagcttgaagcagctgggtcacaatcaatctcca
caattcaggaaatcagtaatggaatgcatgccaccctagcaccttagttg
actgtccttcaccttcttattacgtctagggattccctggcctagggaat
tggtgttcaccaaacagtgtgcacctctttcttaacttcaattagcctga
atccaaaatatcctcctaacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_29069974_29070477
seq2: B6Ng01-217O13.b_53_178 (reverse)

seq1  TATG--TATATATGTATATGTATATATGTATATGTGTGTGTGTATATATA  48
      ||||  ||||||| ||||||||||||| |||||   | | | |||| |||
seq2  TATGTATATATATATATATGTATATATATATATACATATATATATACATA  50

seq1  TATATATACATACATATATATATATATATATATTTGAGGGGACACGATGA  98
      |||||||  ||| |||||| ||||||||||  |||   | |||| | |  
seq2  TATATATGTATATATATATGTATATATATAGGTTTTTCGAGACAGGGT--  98

seq1  AAAATAACGGTTTCATTCTAATTCTCCT--ATTATTTTAATTTTGAAACC  146
          |  | || |    ||   | ||||  |                   
seq2  ---TTCTCTGTATAGCCCTGGCTGTCCTGGA-------------------  126

seq1  ACACAAATACCTATTCAAAGGATATATATACATATATATATATGATTTAA  196
                                                        
seq2  --------------------------------------------------  126

seq1  TCATTTATTTTATGTGTATGAGTACATGCTGTAGCTGTATAGATGGTTGT  246
                                                        
seq2  --------------------------------------------------  126

seq1  GAGCCTTCATCTGCTTGTTGGGAATTGAATTTAGGACTTCTGCTCACTTT  296
                                                        
seq2  --------------------------------------------------  126

seq1  GACCCCATTACGGGCAGCAGATCCCATTACAGATGGTTGTGAGCCACCAT  346
                                                        
seq2  --------------------------------------------------  126

seq1  GTGGTTGTTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGCCC  396
                                                        
seq2  --------------------------------------------------  126

seq1  TTACCTACTGAGCCATCTCTCCAACCCCCTCAAAAAATTATATATATATA  446
                                                        
seq2  --------------------------------------------------  126

seq1  TTTGTTTGTTTTTGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCT  496
                                                        
seq2  --------------------------------------------------  126

seq1  GTCCTGGA  504
              
seq2  --------  126

seq1: chr4_4787454_4788598
seq2: B6Ng01-217O13.g_67_1239 (reverse)

seq1  TCTG-TAGGAGATTATTTTG--ATCAGGCTAATTGAGGT--AGAAAGAGG  45
      |||| ||||||  |||||||   ||||||||||||| ||  |||||||||
seq2  TCTGTTAGGAGGATATTTTGGATTCAGGCTAATTGAAGTTAAGAAAGAGG  50

seq1  TGCACACTG-TTGGTG-ACA-CAATTCCCTAGG-CAGGGAAT-CCTAGAC  90
      ||||||||| |||||| ||| |||||||||||| |||||||| |||||||
seq2  TGCACACTGTTTGGTGAACACCAATTCCCTAGGCCAGGGAATCCCTAGAC  100

seq1  GT-ATAAGA--GTGAA-GACAGTCAACTAA-GTGCTA-GGTTGCATGCAT  134
      || ||||||  ||||| ||||||||||||| |||||| ||| ||||||||
seq2  GTAATAAGAAGGTGAAGGACAGTCAACTAAGGTGCTAGGGTGGCATGCAT  150

seq1  T-CATTACTGA-TTCCTG-ATTGTGGAGA-TGA-TGTGA-CCAGCTGCTT  178
      | ||||||||| |||||| |||||||||| ||| ||||| ||||||||||
seq2  TCCATTACTGATTTCCTGAATTGTGGAGATTGATTGTGACCCAGCTGCTT  200

seq1  CAAGCTTCTGC-TGTGT-GGACT-CCCATAA--TCACTGCACATGAGAAT  223
      ||||||||||| ||||| ||||| |||||||   ||||||||||||||||
seq2  CAAGCTTCTGCTTGTGTGGGACTCCCCATAAATCCACTGCACATGAGAAT  250

seq1  TGTGAGTCAGGATTAAACCC-TTCCTCCCTTCAGTTTCTTTTGTCAGAGT  272
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTGAGTCAGGATTAAACCCTTTCCTCCCTTCAGTTTCTTTTGTCAGAGT  300

seq1  GTTTTATCATAGCAATGGAAAAAGAAAATGAAACAATTCTTTCTGTAGTA  322
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATCATAGCAATGGAAAAAGAAAATGAAACAATTCTTTCTGTAGTA  350

seq1  GATGTTCAACATATCTAATCTAAAACTATACTTGGTATAGATATCTTTAC  372
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCAACATATCTAATCTAAAACTATACTTGGTATAGATATCTTTAC  400

seq1  TCTCAAAGATTTGATTTAGTAGCATAACTAGAAATAAATAATCACTTGAA  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGATTTGATTTAGTAGCATAACTAGAAATAAATAATCACTTGAA  450

seq1  TACCATTATTAACAAATATTTCCTGCATGGATTTCCATCAATGTTTTTGC  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTATTAACAAATATTTCCTGCATGGATTTCCATCAATGTTTTTGC  500

seq1  ATACTTTGTTAGAGGAGAAAACCCTTTGTTAGATGAATATTTTATTTCAT  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTGTTAGAGGAGAAAACCCTTTGTTAGATGAATATTTTATTTCAT  550

seq1  TTTTTGAGTCACATCAGATTTTGTAGTAAGAATGCTGACATACTGATAAA  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGTCACATCAGATTTTGTAGTAAGAATGCTGACATACTGATAAA  600

seq1  AAGCATATATTAGATTGCAAAATATATAAACTAGAAGTATTTGATGAAGT  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATATATTAGATTGCAAAATATATAAACTAGAAGTATTTGATGAAGT  650

seq1  CTGCTGGACACCTATAAGAGATTGGGTAATTTCAGGTAAAGTATAACAAG  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGACACCTATAAGAGATTGGGTAATTTCAGGTAAAGTATAACAAG  700

seq1  TGGGCACAGAACACAATTGTTCTAAAGTTGGTTCTAAAGTCTGGTTAGTT  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACAGAACACAATTGTTCTAAAGTTGGTTCTAAAGTCTGGTTAGTT  750

seq1  TTAGTGTGTGATGTTTTCATTTATTTTCAAAATTTTTACAATAAAATATA  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTGTGATGTTTTCATTTATTTTCAAAATTTTTACAATAAAATATA  800

seq1  AAATAGAATATGATTGTTATCGAGTTGAAGGGTAAGTCTATGATTGAAAA  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAATATGATTGTTATCGAGTTGAAGGGTAAGTCTATGATTGAAAA  850

seq1  GCTATTTCAAATTTGTTTTAAATTTATATAGGAGAATTGAAAATAAACTT  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTCAAATTTGTTTTAAATTTATATAGGAGAATTGAAAATAAACTT  900

seq1  AGTACTTTTCATAGAGAACAACAGTTTTTGTTCTGTAATCTGTGATGAGT  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTTTCATAGAGAACAACAGTTTTTGTTCTGTAATCTGTGATGAGT  950

seq1  GTTTGACTAATTTACCTCATTAACTTGAGATTATTTATTCAGTAAAAGTA  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACTAATTTACCTCATTAACTTGAGATTATTTATTCAGTAAAAGTA  1000

seq1  TCTCCAGAAATGTTACAAAATATCAAGCTAGAACTTGGATTCTAATTTAT  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAAATGTTACAAAATATCAAGCTAGAACTTGGATTCTAATTTAT  1050

seq1  GCAATATTGTTACTAATTTTTAAACCAAAACTTGTAATGTTTAAGTATAG  1072
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATTGTTACTAATTTTTAAACCAAAACTTGTAATGTTTAAGTATAG  1100

seq1  AATATAAATATATTAATTCCAGGATGGTTTTAAAAGCTGGATGTTATATA  1122
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAATATATTAATTCCAGGATGGTTTTAAAAGCTGGATGTTATATA  1150

seq1  TTGCTGTTCATTTTAAGGAATTC  1145
      |||||||||||||||||||||||
seq2  TTGCTGTTCATTTTAAGGAATTC  1173