BAC Information

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BAC

Clone NameB6Ng01-219H11
Chromosome17 (Build37)
Map Location 90,652,841 - 90,758,938
singlet/doubletdoublet
Overlap geneNrxn1
Upstream geneLOC100043904, LOC100043906
Downstream geneEG668871, LOC668872, LOC627235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219H11.bB6Ng01-219H11.g
ACCGA035296GA035297
length1,1371,117
definitionB6Ng01-219H11.b B6Ng01-219H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,757,789 - 90,758,938)(90,652,841 - 90,653,955)
sequence
gaattcattggaaaatgtaatcacatttaaattttgattaactggaagct
taaaaaaaatagatcaacttagaaaaagttcattttgaatccagtgtcct
aattttgatagattggtttttgttatatttatgtaaatttcatcaattga
gagttcaaagtcaggtggattattgattgttagagctcataaggagacag
gggatgttgaagatttggagagaaaaactattaagattttctaacagaat
aaatatgttaattagatattgaaaatactgggtcacaggctaagggtaag
tccttaactttcactggtcaaaaaatctttatagacacactttagtttcc
atagaactctgaggatatcatctagcttcttgttgacaacatagaaaaag
aataataattgataattattttatagcaagctgtattttaattggtgcta
atttataaatatttgatgcaggatcatgtgttgttttaagaacacatgtg
ctgaaagtttttgtatgttaaatcacttaccttctatactagactattta
ctatataaccttattttatcatcaatgattctctagttatttcatatttt
tctctaactttctgataaactatatgatgtcatggaatgttacttataaa
aatgatgattaataaaaacatggaaacatggcttactctaactttcaagc
ctctcccatagagtttattgagcatttaattttccccacgtctactttgc
atgcagtagatatgaataaggtgacattgcttagatattacacatataag
aagtggataaagcataggttttaaagacaatataaagtgtcttgtgaaaa
ttttttatcataaatatttaaattagtgatgttgcaggcttgtagtccat
taaaaacactttctccggagcaatgaacaaaaacatttaactagggttaa
gttatagcatgtagtttttatcagatgtagcatataattttacccatatt
gtcactttcagaaaatctcctgtaggtatcactttacaggtgctattaga
gattacatttacactctacattatggaagaggctgtgtgatgaagactca
cccttggaggtattaatgtaccttttctagcagggaa

gaattcctcccttcatcatttcatctggaaaacagctgccagatttgttt
cccagtaagaggaaattacgaaggcagcatcctgggcaaacatgttaagc
gctcaccgtattgcccagtatggtggagctttcccatcaaagtcagttat
ttcccttgctcagccatgcctgactccaggaaaggaaatctatgagatta
gtgtttctagaccaccacatgcagagatggaaagagggagagacaagaag
tcccagtggctttgtgttccccactacccagcttctttgagttccagatg
catacattaggaagcattagccagaataacttcttctgtgaaggtattac
aacacaggagatagcaagaacatgtgagtgcaaggctgtgcggaccacaa
catggtttagcaaggacaggcagagcttacactgcaaatgtttacacaga
tatctatagcaatgcagttcagagagataggatgtcttgccttgttagat
aaagaaaacagggtgaaggggagccagagaatgcaattaatctcattctg
attgctaggcgctatctggtgtttaaacaggaggaacataaattgcttga
aaccaaagactcagaagaaggaaagtattaaaaaaataaataaagctatc
acaaactctaaaccaaaccgaagacaattaaatcctcctggtgataaagc
tcactggaaaccattctgattttgttcatctgttagctgaggccacaaaa
ccaaacaaacatgagaagctagcctagtcaaatatctcgttttcacattt
gtttgaataataaagcatttttttcttggagtccaactgaagaaaaactg
ggaaatggaagcaaagtgccattcattttcaaagcttctttttatttttc
tctgcataaactagataattgggatgcagttctgactacttcatatttag
tctcagtcaaattggatacaatttagtgaggccaaatgtggaaaagtccg
gttacgttaggcagcttaatctgtattgtatttaaatgtattttctttgt
aaagaaattaaatcaagctattagaaatatcacataaatataaatactta
atatatattaacatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_90757789_90758938
seq2: B6Ng01-219H11.b_44_1180 (reverse)

seq1  TTCCCTGGTTAGAAAAGGGTACCATTAATACCCTCCAAAGGGGTGAGTCC  50
      |||||| | ||||||| |||| |||||||| |||||||  ||||||||| 
seq2  TTCCCT-GCTAGAAAA-GGTA-CATTAATA-CCTCCAA--GGGTGAGTCT  44

seq1  TCATTCACACAGCCTTCCTTCCATAAATGTAGAGGTGTTAAATGTAATCT  100
      ||| |||||||||||  ||||||| |||||||| ||| ||||||||||||
seq2  TCA-TCACACAGCCT--CTTCCAT-AATGTAGA-GTG-TAAATGTAATCT  88

seq1  CTAATTAGCACCTGTAAAGTGATACCTACAGGAGATTTTCTGAAAGTGAC  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAA-TAGCACCTGTAAAGTGATACCTACAGGAGATTTTCTGAAAGTGAC  137

seq1  AATATTGGTAAAATTATATGCTACATCTGATAAAAACTACATGCTATAAC  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGGTAAAATTATATGCTACATCTGATAAAAACTACATGCTATAAC  187

seq1  TTAACCCTAGTTAAATGTTTTTGTTCATTGCTCCGGAGAAAGTGTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCTAGTTAAATGTTTTTGTTCATTGCTCCGGAGAAAGTGTTTTTA  237

seq1  ATGGACTACAAGCCTGCAACATCACTAATTTAAATATTTATGATAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTACAAGCCTGCAACATCACTAATTTAAATATTTATGATAAAAAA  287

seq1  TTTTCACAAGACACTTTATATTGTCTTTAAAACCTATGCTTTATCCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAAGACACTTTATATTGTCTTTAAAACCTATGCTTTATCCACTT  337

seq1  CTTATATGTGTAATATCTAAGCAATGTCACCTTATTCATATCTACTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATGTGTAATATCTAAGCAATGTCACCTTATTCATATCTACTGCAT  387

seq1  GCAAAGTAGACGTGGGGAAAATTAAATGCTCAATAAACTCTATGGGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTAGACGTGGGGAAAATTAAATGCTCAATAAACTCTATGGGAGAG  437

seq1  GCTTGAAAGTTAGAGTAAGCCATGTTTCCATGTTTTTATTAATCATCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAAGTTAGAGTAAGCCATGTTTCCATGTTTTTATTAATCATCATT  487

seq1  TTTATAAGTAACATTCCATGACATCATATAGTTTATCAGAAAGTTAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGTAACATTCCATGACATCATATAGTTTATCAGAAAGTTAGAGA  537

seq1  AAAATATGAAATAACTAGAGAATCATTGATGATAAAATAAGGTTATATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGAAATAACTAGAGAATCATTGATGATAAAATAAGGTTATATAG  587

seq1  TAAATAGTCTAGTATAGAAGGTAAGTGATTTAACATACAAAAACTTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGTCTAGTATAGAAGGTAAGTGATTTAACATACAAAAACTTTCAG  637

seq1  CACATGTGTTCTTAAAACAACACATGATCCTGCATCAAATATTTATAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGTTCTTAAAACAACACATGATCCTGCATCAAATATTTATAAAT  687

seq1  TAGCACCAATTAAAATACAGCTTGCTATAAAATAATTATCAATTATTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCAATTAAAATACAGCTTGCTATAAAATAATTATCAATTATTATT  737

seq1  CTTTTTCTATGTTGTCAACAAGAAGCTAGATGATATCCTCAGAGTTCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTATGTTGTCAACAAGAAGCTAGATGATATCCTCAGAGTTCTAT  787

seq1  GGAAACTAAAGTGTGTCTATAAAGATTTTTTGACCAGTGAAAGTTAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTAAAGTGTGTCTATAAAGATTTTTTGACCAGTGAAAGTTAAGGA  837

seq1  CTTACCCTTAGCCTGTGACCCAGTATTTTCAATATCTAATTAACATATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCCTTAGCCTGTGACCCAGTATTTTCAATATCTAATTAACATATTT  887

seq1  ATTCTGTTAGAAAATCTTAATAGTTTTTCTCTCCAAATCTTCAACATCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTAGAAAATCTTAATAGTTTTTCTCTCCAAATCTTCAACATCCC  937

seq1  CTGTCTCCTTATGAGCTCTAACAATCAATAATCCACCTGACTTTGAACTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCTTATGAGCTCTAACAATCAATAATCCACCTGACTTTGAACTC  987

seq1  TCAATTGATGAAATTTACATAAATATAACAAAAACCAATCTATCAAAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGATGAAATTTACATAAATATAACAAAAACCAATCTATCAAAATT  1037

seq1  AGGACACTGGATTCAAAATGAACTTTTTCTAAGTTGATCTATTTTTTTTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACTGGATTCAAAATGAACTTTTTCTAAGTTGATCTATTTTTTTTA  1087

seq1  AGCTTCCAGTTAATCAAAATTTAAATGTGATTACATTTTCCAATGAATTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCAGTTAATCAAAATTTAAATGTGATTACATTTTCCAATGAATTC  1137


seq1: chr17_90652841_90653955
seq2: B6Ng01-219H11.g_66_1182

seq1  GAATTCCTCCCTTCATCATTTCATCTGGAAAACAGCTGCCAGATTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCTTCATCATTTCATCTGGAAAACAGCTGCCAGATTTGTTT  50

seq1  CCCAGTAAGAGGAAATTACGAAGGCAGCATCCTGGGCAAACATGTTAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAAGAGGAAATTACGAAGGCAGCATCCTGGGCAAACATGTTAAGC  100

seq1  GCTCACCGTATTGCCCAGTATGGTGGAGCTTTCCCATCAAAGTCAGTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCGTATTGCCCAGTATGGTGGAGCTTTCCCATCAAAGTCAGTTAT  150

seq1  TTCCCTTGCTCAGCCATGCCTGACTCCAGGAAAGGAAATCTATGAGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTGCTCAGCCATGCCTGACTCCAGGAAAGGAAATCTATGAGATTA  200

seq1  GTGTTTCTAGACCACCACATGCAGAGATGGAAAGAGGGAGAGACAAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTAGACCACCACATGCAGAGATGGAAAGAGGGAGAGACAAGAAG  250

seq1  TCCCAGTGGCTTTGTGTTCCCCACTACCCAGCTTCTTTGAGTTCCAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTGGCTTTGTGTTCCCCACTACCCAGCTTCTTTGAGTTCCAGATG  300

seq1  CATACATTAGGAAGCATTAGCCAGAATAACTTCTTCTGTGAAGGTATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTAGGAAGCATTAGCCAGAATAACTTCTTCTGTGAAGGTATTAC  350

seq1  AACACAGGAGATAGCAAGAACATGTGAGTGCAAGGCTGTGCGGACCACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGAGATAGCAAGAACATGTGAGTGCAAGGCTGTGCGGACCACAA  400

seq1  CATGGTTTAGCAAGGACAGGCAGAGCTTACACTGCAAATGTTTACACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTAGCAAGGACAGGCAGAGCTTACACTGCAAATGTTTACACAGA  450

seq1  TATCTATAGCAATGCAGTTCAGAGAGATAGGATGTCTTGCCTTGTTAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATAGCAATGCAGTTCAGAGAGATAGGATGTCTTGCCTTGTTAGAT  500

seq1  AAAGAAAACAGGGTGAAGGGGAGCCAGAGAATGCAATTAATCTCATTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAACAGGGTGAAGGGGAGCCAGAGAATGCAATTAATCTCATTCTG  550

seq1  ATTGCTAGGCGCTATCTGGTGTTTAAACAGGAGGAACATAAATTGCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAGGCGCTATCTGGTGTTTAAACAGGAGGAACATAAATTGCTTGA  600

seq1  AACCAAAGACTCAGAAGAAGGAAAGTATTAAAAAAATAAATAAAGCTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGACTCAGAAGAAGGAAAGTATTAAAAAAATAAATAAAGCTATC  650

seq1  ACAAACTCTAAACCAAACCGAAGACAATTAAATCCTCCTGGTGATAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTCTAAACCAAACCGAAGACAATTAAATCCTCCTGGTGATAAAGC  700

seq1  TCACTGGAAACCATTCTGATTTTGTTCATCTGTTAGCTGAGGCCACAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGAAACCATTCTGATTTTGTTCATCTGTTAGCTGAGGCCACAAAA  750

seq1  CCAAACAAACATGAGAAGCTAGCCTAGTCAAATATCTCGTTTTCACATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAACATGAGAAGCTAGCCTAGTCAAATATCTCGTTTTCACATTT  800

seq1  GTTTGAATAATAAAGCA-TTTTTTCTTGGAGTCCAACTGAAGAAAAACT-  848
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  GTTTGAATAATAAAGCATTTTTTTCTTGGAGTCCAACTGAAGAAAAACTG  850

seq1  GGAAATGGAAGCAAAGTGCCATTCATTTTCAAAGCTTCTTTT--ATTTTC  896
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  GGAAATGGAAGCAAAGTGCCATTCATTTTCAAAGCTTCTTTTTATTTTTC  900

seq1  TCTGCATAAACTAGATAATT-GGATGCAGTTCTGACTACTTCATATTTAG  945
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTGCATAAACTAGATAATTGGGATGCAGTTCTGACTACTTCATATTTAG  950

seq1  TCTCAGTCAAATTGGATACAATTTAGTGAGGCCAAATGTGGAAAAGTCC-  994
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTCAGTCAAATTGGATACAATTTAGTGAGGCCAAATGTGGAAAAGTCCG  1000

seq1  GTTACG-TAGGCAGCTTTACACCTGTA-TGTATTTAAAATGTATTTCTTT  1042
      |||||| ||||||||||   | ||||| ||||||| ||||||||||  ||
seq2  GTTACGTTAGGCAGCTT--AATCTGTATTGTATTT-AAATGTATTTTCTT  1047

seq1  TGTAAAGAAAATAAAATCCAGTTTATATAGAAATATCACATTAAAATATA  1092
      ||||||| |||| ||||| ||  ||| |||||||||||||| || ||| |
seq2  TGTAAAG-AAATTAAATCAAG-CTAT-TAGAAATATCACATAAATATA-A  1093

seq1  ATACTTATATTATATT-ATATTTT  1115
      |||||||   |||||| | |||||
seq2  ATACTTAATATATATTAACATTTT  1117


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