BAC Information

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BAC

Clone NameB6Ng01-219P15
Chromosome17 (Build37)
Map Location 62,344,636 - 62,494,828
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC433129, EG620725, LOC100043560
Downstream geneEfna5, Fbxl17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219P15.bB6Ng01-219P15.g
ACCGA035656GA035657
length1,1951,121
definitionB6Ng01-219P15.b B6Ng01-219P15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,493,624 - 62,494,828)(62,344,636 - 62,345,769)
sequence
gaattcacattgtttttgtatatgtcagaggattgcttagggataatgtc
ttgaggttactgtgtaacaattctaattcttcagaaatgtttgatgagtg
gtgagatagtcagactaactagtcatagtatcttcaaaccttgcttccca
taccttgcttctagagatacaatgaaactgtcattcctgaatctcaggtc
tgaaggcctaagtattgtcattaaaccatcatttctcctggttctcagga
tggacttatactgttggctgtcctgggtcctactcatgtagttatagact
atagatcttgaatatatgaaccaatttattagagcaaatcagttctgcat
atggcattaattctgttcctctggagaatccagaccaatgtaactggtaa
cttgatatattggtaagagaaagtacaaggaaaagcctttccaattgtct
agacactatctacatactgtctacctaccttagatcatcatatggcctca
gggaaagtaagtctgtttaagcaacacatatatgaattttacagttttat
agttctttttttttttaaatctgatctttccaacaatactgtaaagccaa
tacaattccacactccagtgttttgttttgattttttttcttcttaaatt
ggaaaagtggttttcagttaacaatattggtgtctgtctaaggtaagttt
tctaccagttattgacctaaattccagtctgaatgtatttgtgtactgag
actaggcgatggtccagcttttgggtttgaactctatactcttggtctta
ctgtatctgtgttgctataattttcatagtaacatgctatctggtcatct
atgcttctattttaatctaatagattaattcactattcatcaaggagaaa
ctacttaaaaataatgattttatgctgttctgcataattcacatgattgt
acaccaagtgtatttgaaatacttgactgactttttgtgggagggagctc
ttgccctgcagcattttccctgttattacagttgtcagttcccttcagct
atactgtctttcagtgtagccattgaatttggccaaactactttcgatac
ctctgctttcttagttcaatactcttgatgggcttctagtgttcctattg
attcttcaattgcttcagtggaatgtttccatttccgtgtataat

gaattctgtccctggctatactgagagcctcctcccacgaccagccatag
gacacaaatatgcataagtgcacattgctctgtgtcactgagaagcaaag
cgttgttgacagaggacattgttgacttatcagaatcattggccagatgc
tagtgggtcataaatcagctatcaatgtctcgaaagacaaatgagagaga
ataaagggagagaagttagtcattacaaggctgcaaaaatgaaaatacta
atattctgaaggctagctactagagaggcattcatggtcccatactctat
gcaagaagtggccagacacatgcacactgtcaatgataaaaagaaaaatt
tctgggtcagtaggaaaactggttggctaagcaagcctttgacaagattg
tttatatgatgttgtactgcaaccatagtttttactttgggaaattatcg
taaaatatttgtatcccttcagcaaaaatgaagacaggcctatagagatc
tttgcctttaaaacagcaactttaaaaattggaaatagcacatgaataaa
agaaacaagatggcttccacaaacgctaaccagaacagttaaatatttcc
aatttagtaaattggtctatatggaaattagtgtttttaaataaagaaaa
catattaaagggcatgcatgatcatttattttgacatttcataatttagt
ctaattatttatggaactgtagcccattaagctggcctttggtatagttt
gtgaaaatagtgacattttagtcaaagaagcacgtactttcactttctgt
attacatccaggcaagatatttagcaaagtaattaattaaaaactaaaat
gtcaagcctttacacagagtcctgtgcattagccacagatacagataaac
tggaatccagagaacttagaattgctgcttcactaaatccacacatttcc
agaagaaaaatctgtgaaattaattcttggagccacttagagctgcgaat
tatagctaatatagcctgagacatgggccgcactcatctactgacatgcc
catcttctttttgcagttatccaaatctgtataatctcatctctgatcat
tgctgaatacatttttctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_62493624_62494828
seq2: B6Ng01-219P15.b_49_1243 (reverse)

seq1  AATATACAAGGAAATGGAAACATACAACTTGAAGCAAAATTAGAAGAAAC  50
      | |||||| |||||||||||||| | || ||||||||   | |||||| |
seq2  ATTATACACGGAAATGGAAACATTCCAC-TGAAGCAA---TTGAAGAATC  46

seq1  AAAATTAGAGAACAAAATTAGAAGCCAATTCAGAGTATAGAACT-AGAAA  99
      ||   ||| ||||   | |||||||| ||  ||||||| ||||| |||||
seq2  AA---TAG-GAAC---ACTAGAAGCCCATCAAGAGTATTGAACTAAGAAA  89

seq1  GCAGAGGTATCGAAAGTAAGTTTGG-CAAAATCAATGGCTACACTGAAAG  148
      ||||||||||||||||| ||||||| |||| |||||||||||||||||||
seq2  GCAGAGGTATCGAAAGT-AGTTTGGCCAAATTCAATGGCTACACTGAAAG  138

seq1  ACAGTATAGCTGAAGGGAACTGGACAACTGTAATAACAGGGAAAATGCTG  198
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACAGTATAGCTGAAGGGAACT-GACAACTGTAATAACAGGGAAAATGCTG  187

seq1  CAGGGCAAGAGCTCCCTCCCAC-AAAAGTCAGTCAAGTATTTCAAATACA  247
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGGGCAAGAGCTCCCTCCCACAAAAAGTCAGTCAAGTATTTCAAATACA  237

seq1  CTTGGTGTACAATCATGTGAATTATGCAGAACAGCATAAAATCATTTATT  297
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTGGTGTACAATCATGTGAATTATGCAGAACAGCATAAAATCA-TTATT  286

seq1  TTTAAGTAGTTTCTCCTTGATGAATAGTGAATTAATCTATTAGATTAAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTAGTTTCTCCTTGATGAATAGTGAATTAATCTATTAGATTAAAA  336

seq1  TAGAAGCATAGATGACCAGATAGCATGTTACTATGAAAATTATAGCAACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCATAGATGACCAGATAGCATGTTACTATGAAAATTATAGCAACA  386

seq1  CAGATACAGTAAGACCAAGAGTATAGAGTTCAAACCCAAAAGCTGGACCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACAGTAAGACCAAGAGTATAGAGTTCAAACCCAAAAGCTGGACCA  436

seq1  TCGCCTAGTCTCAGTACACAAATACATTCAGACTGGAA-TTAGGTCAATA  496
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCGCCTAGTCTCAGTACACAAATACATTCAGACTGGAATTTAGGTCAATA  486

seq1  ACTGGTAGAAAACTTACCTTAGACAGACACCAATATTGTTAACTGAAAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAGAAAACTTACCTTAGACAGACACCAATATTGTTAACTGAAAAC  536

seq1  CACTTTTCCAATTTAAGAAGAAAAAAAATCAAAACAAAACACTGGAGTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTCCAATTTAAGAAGAAAAAAAATCAAAACAAAACACTGGAGTGT  586

seq1  GGAATTGTATTGGCTTTACAGTATTGTTGGAAAGATCAGATTTAAAAAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGTATTGGCTTTACAGTATTGTTGGAAAGATCAGATTTAAAAAAA  636

seq1  AAAAGAACTATAAAACTGTAAAATTCATATATGTGTTGCTTAAACAGACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACTATAAAACTGTAAAATTCATATATGTGTTGCTTAAACAGACT  686

seq1  TACTTTCCCTGAGGCCATATGATGATCTAAGGTAGGTAGACAGTATGTAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCCCTGAGGCCATATGATGATCTAAGGTAGGTAGACAGTATGTAG  736

seq1  ATAGTGTCTAGACAATTGGAAAGGCTTTTCCTTGTACTTTCTCTTACCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTCTAGACAATTGGAAAGGCTTTTCCTTGTACTTTCTCTTACCAA  786

seq1  TATATCAAGTTACCAGTTACATTGGTCTGGATTCTCCAGAGGAACAGAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAAGTTACCAGTTACATTGGTCTGGATTCTCCAGAGGAACAGAAT  836

seq1  TAATGCCATATGCAGAACTGATTTGCTCTAATAAATTGGTTCATATATTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCATATGCAGAACTGATTTGCTCTAATAAATTGGTTCATATATTC  886

seq1  AAGATCTATAGTCTATAACTACATGAGTAGGACCCAGGACAGCCAACAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTATAGTCTATAACTACATGAGTAGGACCCAGGACAGCCAACAGT  936

seq1  ATAAGTCCATCCTGAGAACCAGGAGAAATGATGGTTTAATGACAATACTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCCATCCTGAGAACCAGGAGAAATGATGGTTTAATGACAATACTT  986

seq1  AGGCCTTCAGACCTGAGATTCAGGAATGACAGTTTCATTGTATCTCTAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTCAGACCTGAGATTCAGGAATGACAGTTTCATTGTATCTCTAGA  1036

seq1  AGCAAGGTATGGGAAGCAAGGTTTGAAGATACTATGACTAGTTAGTCTGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGTATGGGAAGCAAGGTTTGAAGATACTATGACTAGTTAGTCTGA  1086

seq1  CTATCTCACCACTCATCAAACATTTCTGAAGAATTAGAATTGTTACACAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCACCACTCATCAAACATTTCTGAAGAATTAGAATTGTTACACAG  1136

seq1  TAACCTCAAGACATTATCCCTAAGCAATCCTCTGACATATACAAAAACAA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCAAGACATTATCCCTAAGCAATCCTCTGACATATACAAAAACAA  1186

seq1  TGTGAATTC  1205
      |||||||||
seq2  TGTGAATTC  1195


seq1: chr17_62344636_62345769
seq2: B6Ng01-219P15.g_66_1186

seq1  GAATTCTGTCCCTGGCTATACTGAGAGCCTCCTCCCACGACCAGCCATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCCTGGCTATACTGAGAGCCTCCTCCCACGACCAGCCATAG  50

seq1  GACACAAATATGCATAAGTGCACATTGCTCTGTGTCACTGAGAAGCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAATATGCATAAGTGCACATTGCTCTGTGTCACTGAGAAGCAAAG  100

seq1  CGTTGTTGACAGAGGACATTGTTGACTTATCAGAATCATTGGCCAGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTTGACAGAGGACATTGTTGACTTATCAGAATCATTGGCCAGATGC  150

seq1  TAGTGGGTCATAAATCAGCTATCAATGTCTCGAAAGACAAATGAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGTCATAAATCAGCTATCAATGTCTCGAAAGACAAATGAGAGAGA  200

seq1  ATAAAGGGAGAGAAGTTAGTCATTACAAGGCTGCAAAAATGAAAATACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGAGAGAAGTTAGTCATTACAAGGCTGCAAAAATGAAAATACTA  250

seq1  ATATTCTGAAGGCTAGCTACTAGAGAGGCATTCATGGTCCCATACTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTGAAGGCTAGCTACTAGAGAGGCATTCATGGTCCCATACTCTAT  300

seq1  GCAAGAAGTGGCCAGACACATGCACACTGTCAATGATAAAAAGAAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAGTGGCCAGACACATGCACACTGTCAATGATAAAAAGAAAAATT  350

seq1  TCTGGGTCAGTAGGAAAACTGGTTGGCTAAGCAAGCCTTTGACAAGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCAGTAGGAAAACTGGTTGGCTAAGCAAGCCTTTGACAAGATTG  400

seq1  TTTATATGATGTTGTACTGCAACCATAGTTTTTACTTTGGGAAATTATCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGATGTTGTACTGCAACCATAGTTTTTACTTTGGGAAATTATCG  450

seq1  TAAAATATTTGTATCCCTTCAGCAAAAATGAAGACAGGCCTATAGAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTTGTATCCCTTCAGCAAAAATGAAGACAGGCCTATAGAGATC  500

seq1  TTTGCCTTTAAAACAGCAACTTTAAAAATTGGAAATAGCACATGAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTTAAAACAGCAACTTTAAAAATTGGAAATAGCACATGAATAAA  550

seq1  AGAAACAAGATGGCTTCCACAAACGCTAACCAGAACAGTTAAATATTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAGATGGCTTCCACAAACGCTAACCAGAACAGTTAAATATTTCC  600

seq1  AATTTAGTAAATTGGTCTATATGGAAATTAGTGTTTTTAAATAAAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGTAAATTGGTCTATATGGAAATTAGTGTTTTTAAATAAAGAAAA  650

seq1  CATATTAAAGGGCATGCATGATCATTTATTTTGACATTTCATAATTTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTAAAGGGCATGCATGATCATTTATTTTGACATTTCATAATTTAGT  700

seq1  CTAATTATTTATGGAACTGTAGCCCATTAAGCTGGCCTTTGGTATAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATTTATGGAACTGTAGCCCATTAAGCTGGCCTTTGGTATAGTTT  750

seq1  GTGAAAATAGTGACATTTTAGTCAAAGAAGCACGTACTTTCACTTTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATAGTGACATTTTAGTCAAAGAAGCACGTACTTTCACTTTCTGT  800

seq1  ATTACATCCAGGCAAGATATTTAGCAAAGTAATTAATTAAAAACTAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATCCAGGCAAGATATTTAGCAAAGTAATTAATTAAAAACTAAAAT  850

seq1  GTCAAGCC-TTACACAGAGTCCTGTGCATTAGCCACAGATACAGATAAAC  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCCTTTACACAGAGTCCTGTGCATTAGCCACAGATACAGATAAAC  900

seq1  TGGAATCCAGAGAACTTAGAATTGCTGCTTCACTAAATCCACACATTTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCCAGAGAACTTAGAATTGCTGCTTCACTAAATCCACACATTTCC  950

seq1  AG-AGACAAATCTGTGAAATTAATTCTTGGAGCCACCTAGGAGCTGCGAA  998
      || ||| ||||||||||||||||||||||||||||| || ||||||||||
seq2  AGAAGAAAAATCTGTGAAATTAATTCTTGGAGCCACTTA-GAGCTGCGAA  999

seq1  TTATAGCTAATTATTAGCCTGAGACATTGGCCGCACCTTCATTCTTACTG  1048
      |||||||||||   ||||||||||||| ||||||||  ||||   |||||
seq2  TTATAGCTAAT--ATAGCCTGAGACATGGGCCGCAC--TCAT--CTACTG  1043

seq1  ACATGCCCCATTCTTCCTTTTTGCCAGTTTATTCAAAATCTGTATAATCT  1098
      ||||||||   |||| ||||||| |||||   || |||||||||||||||
seq2  ACATGCCC--ATCTT-CTTTTTG-CAGTT--ATCCAAATCTGTATAATCT  1087

seq1  CCATCTCTGATCATTGGTGATTACATTTTTCCTGGA  1134
       ||||||||||||||| ||| ||||||||| |||||
seq2  -CATCTCTGATCATTGCTGAATACATTTTT-CTGGA  1121


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