BAC Information

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BAC

Clone NameB6Ng01-220C03
Chromosome17 (Build37)
Map Location 16,098,240 - 16,099,333
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220C03.bB6Ng01-220C03.g
ACCGA035770GA035771
length1,0961,206
definitionB6Ng01-220C03.b B6Ng01-220C03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaacacaaactggactgtcagggcagacatgaaatatagcaggtt
tatgtctggcatctagggcatgcagtatagtgatgtgaatgccaatggac
ttggccagcctcctccctgtggtataatctgtttctctctctctctctca
tacacacacacacacacacacacacacacacacagagagagagagagaga
cagagagagagagagagagagacagagagagacaaagagagagacagaga
taaagacagagagggtgatacacagaaagacagagtgacacagagaggca
gagagagacacacagagaaagacacacacacacacagagagacagagaca
gagagagacagagacagagacagaaagagagaaagagagagacagacaga
gacaaagagagagacagagataaagacagagagggtgatacacagaaaga
cagtgacacagagaggcagagagagacacacagagaaagacacacacaca
cacacacacacacagagagagagagagagagagagagagagagagagaga
gagagagaggctggactccttcaatgacagacaggcacatgacaatgaat
gtttggttagagatgtcctgtctgaaggacagatccttatgtgaggaatg
ggatctacatgcctgtggtgtgtcagagactctgaatactgtagctgaga
cccagaaactgacacactccctggtctgtatttcagcttctgtagaaatc
aggaccctgagagatgtatttgattgacaaaattggttttttcccccata
ctcttgtcttctttcttctcttcttttcattaaaataatacagagttctt
tcatttttcagtgatttatatgttgaacaaatttacagtattgctttatg
gaggtatttctgtattttgaagttatttttaatatctcgagaaccaggtt
ggttctcttgaactttgaggaatttaatttaatgtctagaaccaagttct
atttttgtacaacactgatgaaagaagttcaaatcctatcttaacctagt
gcatgaataaaaaacacttttatcatactaatttcatccataattt
gaattcagagatggcatgaaggtgtcccaaggaaacaaaaagaaaacatc
taaatgaaataaggaagtcaattcagggcatgaaaatagaattttaaaaa
gacatagaagaactggaaataaaccaaactgaaattatgctggaactgaa
attttcaacaagtcaaatagaattctcaatgcaaagcatcatcaatagaa
ttgacaatgcagatgatataataccaagcatcatcaatagaattgaccat
gcagatgatataataccagggtttgaagtggaggtggaagaagataatca
ctcaataaaagccagagataaatttaagaaaaatatgaatggaacatgga
aacatgccagaaaactgtgaaagtcaaaattcatcacttatgggcagaga
aggagagcaattccatgtaaaagacacaacatattttcaataaaattaaa
gaaaacaaatcctaagtgttttagttagagttttagtgctgtgatgagat
accatggccaaggctatggccaaggctactcttataaaggcaaacattta
attgggtctggcttgaagtttcagaggttcagtacattatcatcatggca
aaaatcgtggcagcacgcaggcagacatggtgctagaggaatcaagagtt
ccacattctgatcagaaggcagccagaaggagactaaattccatactggg
cagagcttgagcataggagaccttaaaacctgcctcctcagtgacatact
tcctccagcaaggccacaccttctaatagtagcactccctgtgggccaca
agtattcaaatacatgagtctatggagaccaaacctattcaaactaccac
atcaagtctagagaaaaaaaaaatacccatccaaatacaaagtgcatgca
aagcacagagtagacagaacaagaaatctcaccattgtgttatagttaag
acactaaagttatagactaaagcaagtgtactaaaagctgtaaaagaaag
ggccaacacatgtaaaatcaggcagccagaataacagctgattattcaat
agaagaatttaaagcatgaagttgatgggattgtattttcaatgctgaat
atttacatctgcaatcagactatttatattacagcaaaatatttgttcac
actaagggaaaggaaaatattctcataaattaaatatttatgtataaaga
ggagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_16098240_16099333
seq2: B6Ng01-220C03.b_44_1139

seq1  GAATTCAACACAAACTGGACTGTCAGGGCAGACATGAAATATAGCAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACAAACTGGACTGTCAGGGCAGACATGAAATATAGCAGGTT  50

seq1  TATGTCTGGCATCTAGGGCATGCAGTATAGTGATGTGAATGCCAATGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTGGCATCTAGGGCATGCAGTATAGTGATGTGAATGCCAATGGAC  100

seq1  TTGGCCAGCCTCCTCCCTGTGGTATAATCTGTTTCTCTCTCTCTCTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCAGCCTCCTCCCTGTGGTATAATCTGTTTCTCTCTCTCTCTCTCA  150

seq1  TACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGA  200

seq1  CAGAGAGAGAGAGAGAGAGAGACAGAGAGAGACAAAGAGAGAGACAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGAGAGAGAGAGAGACAGAGAGAGACAAAGAGAGAGACAGAGA  250

seq1  TAAAGACAGAGAGGGTGATACACAGAAAGACAGAGTGACACAGAGAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACAGAGAGGGTGATACACAGAAAGACAGAGTGACACAGAGAGGCA  300

seq1  GAGAGAGACACACAGAGAAAGACACACACACACACAGAGAGACAGAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACACACAGAGAAAGACACACACACACACAGAGAGACAGAGACA  350

seq1  GAGAGAGACAGAGACAGAGACAGAAAGAGAGAAAGAGAGAGACAGACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACAGAGACAGAGACAGAAAGAGAGAAAGAGAGAGACAGACAGA  400

seq1  GACAAAGAGAGAGACAGAGATAAAGACAGAGAGGGTGATACACAGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGAGAGAGACAGAGATAAAGACAGAGAGGGTGATACACAGAAAGA  450

seq1  CAGTGACACAGAGAGGCAGAGAGAGACACACAGAGAAAGACACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACACAGAGAGGCAGAGAGAGACACACAGAGAAAGACACACACACA  500

seq1  CACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  550

seq1  GAGAGAGAGGCTGGACTCCTTCAATGACAGACAGGCACATGACAATGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGGCTGGACTCCTTCAATGACAGACAGGCACATGACAATGAAT  600

seq1  GTTTGGTTAGAGATGTCCTGTCTGAAGGACAGATCCTTATGTGAGGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTTAGAGATGTCCTGTCTGAAGGACAGATCCTTATGTGAGGAATG  650

seq1  GGATCTACATGCCTGTGGTGTGTCAGAGACTCTGAATACTGTAGCTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTACATGCCTGTGGTGTGTCAGAGACTCTGAATACTGTAGCTGAGA  700

seq1  CCCAGAAACTGACACACTCCCTGGTCTGTATTTCAGCTTCTGTAGAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAACTGACACACTCCCTGGTCTGTATTTCAGCTTCTGTAGAAATC  750

seq1  AGGACCCTGAGAGATGTATTTGATTGACAAAATTGGTTTTTTCCCCCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCTGAGAGATGTATTTGATTGACAAAATTGGTTTTTTCCCCCATA  800

seq1  CTCTTGTCTTCTTTCTTCTCTTCTTTTCATTAAAATAATACAGAGTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTCTTCTTTCTTCTCTTCTTTTCATTAAAATAATACAGAGTTCTT  850

seq1  TCATTTTTCAGTGATTTATATGTTGAACAAATTTACAGTATTGCTTTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTCAGTGATTTATATGTTGAACAAATTTACAGTATTGCTTTATG  900

seq1  GAGGTATTTCTGTATTTTGAAGTTATTTTTAATATCTCGAGAACCAGGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATTTCTGTATTTTGAAGTTATTTTTAATATCTCGAGAACCAGGTT  950

seq1  GGTTCTCTTGAAC-TTGAGGAATTTAATTTAATGTCTAGAAACCAAG-TC  998
      ||||||||||||| ||||||||||||||||||||||||| ||||||| ||
seq2  GGTTCTCTTGAACTTTGAGGAATTTAATTTAATGTCTAG-AACCAAGTTC  999

seq1  TA-TTTTGTACAACACTGATGAAAGAAGTTTCAAATCCTATCTTTAACCT  1047
      || ||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  TATTTTTGTACAACACTGATGAAAGAAG-TTCAAATCCTATC-TTAACCT  1047

seq1  AGTGCATTGAATAAAACAC---TTTATCATACTAATTTCATCCATAATTT  1094
      |||||| ||||||||| ||   ||||||||||||||||||||||||||||
seq2  AGTGCA-TGAATAAAAAACACTTTTATCATACTAATTTCATCCATAATTT  1096