BAC Information

Click to search

BAC

Clone NameB6Ng01-220D18
Chromosome17 (Build37)
Map Location 45,500,587 - 45,628,777
singlet/doubletdoublet
Overlap geneEG668314, Cdc5l, Spats1, EG668319
Upstream geneRunx2, Supt3h, 4930564C03Rik, EG210562
Downstream geneAars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220D18.bB6Ng01-220D18.g
ACCGA035847GA035848
length1,125896
definitionB6Ng01-220D18.b B6Ng01-220D18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,627,654 - 45,628,777)(45,500,587 - 45,501,481)
sequence
gaattctgtgctggattccaaggagcctctttgctaggagatatggaaat
tcccttaaacaaaggctacaaatgggaaggtctacaatgaggtcccagag
ggcttctctgcctagaggtccttatatgtgaccacagaaacttacatttt
gagttctcagtttcccttttcatccgtgtggctcttggactgtgggtcag
tagtacgtgctacctccagctgtcatctgggtgtcagaaggatattcttt
ttttttcttggcaaggtttctctgtgtagcctaggctgtgctgaaactag
ctatgtagaccaggctggtctatagatctctgcttgtacctgcctcccta
gggctgggattaaaggcatgtgccaccatatccagggactttgaactctg
gatccttcctgcctccccctcttcaagtgctgggattatagcatgcattc
tcttatccagtttctccctttatcctttggaagtggtaagagcagagggg
acggtggggcctcaggctggagacagcactcccaggcagatagacaccaa
gttaaagaccctggctgtcagttgtggatgatgatgtcacccttccgcaa
gcagggagccagagggagtgataaattgaaggtattaaatggcacttggg
aagctgagaagaaacaaatgaatttactttggagccgtcttgcagaaata
tcgatgcctgcaagataccggacttttttttttttttcttcagacactga
actcaggaagagttgcatggtgacagctggggagacgaaaggcgaaacca
agaaaaaggcaggaagcagtagcaggctcagccatgagggcgacttttcc
tcaaagctgccttccctggggtctcagcctcggttttccatctctagtct
gcagaagacaagacttggctgattcggtctgggccccgagtcaaagccaa
aatccagcagcagaatggtcgtgagcttaacaaattgtctataattttat
ttttggaaaatggctttctttccatataattacgtaaatacatattggaa
tatgcacacgcatatgcatgtacatttgtatactcacactgaaattcata
caccacatctgaacatatgcatctg
gaattcagtagtgatcaataaaccagtttgggggacagggaggaccttgt
ttatctatttcatatcataaatccactccaaaactctgtgacttaagaca
aatgagatttttcaatgctcatgatctcccaccagctagagggacttctg
ctgtctctgcctgaagtcatccattaagcccagtggccagaacccaaggc
agaaggagaacccactctggggagatgtgctctggcttcacacgtgttct
gtggtgtgtgaatgcctgctactcatacaaactgactgcacacatgtgtg
catgcacagatatgacaacaacaaaaaagaaatacactcagcaaaagcaa
tttccctaacccaaggcagactgtgatgcagagagtctcttacggggcaa
gaggacaagaagagtgggatggtgtcagagaagccaaggggctggaaaga
cacctgggaacgctaactcatggaagaagagtatggacaactagggtgca
tgctgctgataaatcaatatgttggggtggacataaaggcaaaatgtgcg
ggtgtgtgtgtcagttggtaaaatgcttggcctagaactcaggagcccag
agttcaatccctaacaccatataaactgaggcgcaatgtaaccccaaccc
tgtggtgtcaacaggggaatgagtcgctcaagggcgtcttcattggcaag
tctgaggtcagccttggatccatgagactgggtcaacaaagaaagggggc
aggcttgggctgtgggggtgcaagcctttaatcctggggtgcaagccttt
aatcctgccctggggaggcagaagcagatgaaccagaagaatcctgtcac
acaaagaaagacagacagacagacagatgggaagggaggaagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_45627654_45628777
seq2: B6Ng01-220D18.b_44_1168 (reverse)

seq1  CAGATGCATATGTTCAGATGTGTGTGTATGTATTTCAGTGTGTGTATACA  50
      |||||||||||||||||||||| ||||||| ||||||||||| |||||||
seq2  CAGATGCATATGTTCAGATGTG-GTGTATGAATTTCAGTGTGAGTATACA  49

seq1  TATGTACATGCATATGCGTGTGCATAT--CCATATGTATTTACGTTAATT  98
       ||||||||||||||||||||||||||  | ||||||||||||||  | |
seq2  AATGTACATGCATATGCGTGTGCATATTCCAATATGTATTTACGT--AAT  97

seq1  TATAT-GAAAGAAAGCCATTTTCCCAAAAATAAAATTATAGACAATTTGT  147
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  TATATGGAAAGAAAGCCATTTT-CCAAAAATAAAATTATAGACAATTTGT  146

seq1  TAAGCTCACGACCA-TCTGCTGCTGGATTTTGGCTTTGACTCGGGGCCCA  196
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAAGCTCACGACCATTCTGCTGCTGGATTTTGGCTTTGACTCGGGGCCCA  196

seq1  GACCGAATCAGCCCAAGTCTTGTC-TCTGCAGACTAGAGATGGAAAACCG  245
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  GACCGAATCAG-CCAAGTCTTGTCTTCTGCAGACTAGAGATGGAAAACCG  245

seq1  AGGCTGAGACCCCAGGGAAGGCAGCTTTGAGGAAAAGTCGCCCTCATGGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGACCCCAGGGAAGGCAGCTTTGAGGAAAAGTCGCCCTCATGGC  295

seq1  TGAGCCTGCTACTGCTTCCTGCCTTTTTCTTGGTTTCGCC-TTCGTCTCC  344
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGAGCCTGCTACTGCTTCCTGCCTTTTTCTTGGTTTCGCCTTTCGTCTCC  345

seq1  CCAGCTGTCACCATGCAACTCTTCCTGAGTTCAGTGTCTGAAGAAAAAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTCACCATGCAACTCTTCCTGAGTTCAGTGTCTGAAGAAAAAAA  395

seq1  AAAAAAAGTCCGGTATCTTGCAGGCATCGATATTTCTGCAAGACGGCTCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTCCGGTATCTTGCAGGCATCGATATTTCTGCAAGACGGCTCC  445

seq1  AAAGTAAATTCATTTGTTTCTTCTCAGCTTCCCAAGTGCCATTTAATACC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAATTCATTTGTTTCTTCTCAGCTTCCCAAGTGCCATTTAATACC  495

seq1  TTCAATTTATCACTCCCTCTGGCTCCCTGCTTGCGGAAGGGTGACATCAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTATCACTCCCTCTGGCTCCCTGCTTGCGGAAGGGTGACATCAT  545

seq1  CATCCACAACTGACAGCCAGGGTCTTTAACTTGGTGTCTATCTGCCTGGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACAACTGACAGCCAGGGTCTTTAACTTGGTGTCTATCTGCCTGGG  595

seq1  AGTGCTGTCTCCAGCCTGAGGCCCCACCGTCCCCTCTGCTCTTACCACTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGTCTCCAGCCTGAGGCCCCACCGTCCCCTCTGCTCTTACCACTT  645

seq1  CCAAAGGATAAAGGGAGAAACTGGATAAGAGAATGCATGCTATAATCCCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGATAAAGGGAGAAACTGGATAAGAGAATGCATGCTATAATCCCA  695

seq1  GCACTTGAAGAGGGGGAGGCAGGAAGGATCCAGAGTTCAAAGTCCCTGGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGAAGAGGGGGAGGCAGGAAGGATCCAGAGTTCAAAGTCCCTGGA  745

seq1  TATGGTGGCACATGCCTTTAATCCCAGCCCTAGGGAGGCAGGTACAAGCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGGCACATGCCTTTAATCCCAGCCCTAGGGAGGCAGGTACAAGCA  795

seq1  GAGATCTATAGACCAGCCTGGTCTACATAGCTAGTTTCAGCACAGCCTAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTATAGACCAGCCTGGTCTACATAGCTAGTTTCAGCACAGCCTAG  845

seq1  GCTACACAGAGAAACCTTGCCAAGAAAAAAAAAGAATATCCTTCTGACAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAGAGAAACCTTGCCAAGAAAAAAAAAGAATATCCTTCTGACAC  895

seq1  CCAGATGACAGCTGGAGGTAGCACGTACTACTGACCCACAGTCCAAGAGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGACAGCTGGAGGTAGCACGTACTACTGACCCACAGTCCAAGAGC  945

seq1  CACACGGATGAAAAGGGAAACTGAGAACTCAAAATGTAAGTTTCTGTGGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGGATGAAAAGGGAAACTGAGAACTCAAAATGTAAGTTTCTGTGGT  995

seq1  CACATATAAGGACCTCTAGGCAGAGAAGCCCTCTGGGACCTCATTGTAGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATAAGGACCTCTAGGCAGAGAAGCCCTCTGGGACCTCATTGTAGA  1045

seq1  CCTTCCCATTTGTAGCCTTTGTTTAAGGGAATTTCCATATCTCCTAGCAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCATTTGTAGCCTTTGTTTAAGGGAATTTCCATATCTCCTAGCAA  1095

seq1  AGAGGCTCCTTGGAATCCAGCACAGAATTC  1124
      ||||||||||||||||||||||||||||||
seq2  AGAGGCTCCTTGGAATCCAGCACAGAATTC  1125

seq1: chr17_45500587_45501481
seq2: B6Ng01-220D18.g_69_964

seq1  GAATTCAGTAGTGATCAATAAACCAGTTTGGGGGACAGGGAGGACCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGTGATCAATAAACCAGTTTGGGGGACAGGGAGGACCTTGT  50

seq1  TTATCTATTTCATATCATAAATCCACTCCAAAACTCTGTGACTTAAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATTTCATATCATAAATCCACTCCAAAACTCTGTGACTTAAGACA  100

seq1  AATGAGATTTTTCAATGCTCATGATCTCCCACCAGCTAGAGGGACTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATTTTTCAATGCTCATGATCTCCCACCAGCTAGAGGGACTTCTG  150

seq1  CTGTCTCTGCCTGAAGTCATCCATTAAGCCCAGTGGCCAGAACCCAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGCCTGAAGTCATCCATTAAGCCCAGTGGCCAGAACCCAAGGC  200

seq1  AGAAGGAGAACCCACTCTGGGGAGATGTGCTCTGGCTTCACACGTGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGAACCCACTCTGGGGAGATGTGCTCTGGCTTCACACGTGTTCT  250

seq1  GTGGTGTGTGAATGCCTGCTACTCATACAAACTGACTGCACACATGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTGTGAATGCCTGCTACTCATACAAACTGACTGCACACATGTGTG  300

seq1  CATGCACAGATATGACAACAACAAAAAAGAAATACACTCAGCAAAAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACAGATATGACAACAACAAAAAAGAAATACACTCAGCAAAAGCAA  350

seq1  TTTCCCTAACCCAAGGCAGACTGTGATGCAGAGAGTCTCTTACGGGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTAACCCAAGGCAGACTGTGATGCAGAGAGTCTCTTACGGGGCAA  400

seq1  GAGGACAAGAAGAGTGGGATGGTGTCAGAGAAGCCAAGGGGCTGGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAAGAAGAGTGGGATGGTGTCAGAGAAGCCAAGGGGCTGGAAAGA  450

seq1  CACCTGGGAACGCTAACTCATGGAAGAAGAGTATGGACAACTAGGGTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGGAACGCTAACTCATGGAAGAAGAGTATGGACAACTAGGGTGCA  500

seq1  TGCTGCTGATAAATCAATATGTTGGGGTGGACATAAAGGCAAAATGTGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGATAAATCAATATGTTGGGGTGGACATAAAGGCAAAATGTGCG  550

seq1  GGTGTGTGTGTCAGTTGGTAAAATGCTTGGCCTAGAACTCAGGAGCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGTGTCAGTTGGTAAAATGCTTGGCCTAGAACTCAGGAGCCCAG  600

seq1  AGTTCAATCCCTAACACCATATAAACTGAGGCGCAATGTAACCCCAACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAATCCCTAACACCATATAAACTGAGGCGCAATGTAACCCCAACCC  650

seq1  TGTGGTGTCAACAGGGGAATGAGTCGCTCAAGGGCGTCTTCATTGGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGTCAACAGGGGAATGAGTCGCTCAAGGGCGTCTTCATTGGCAAG  700

seq1  TCTGAGGTCAGCCTTGGATCCATGAGACTGGGTCAACAAAGAAAGGGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTCAGCCTTGGATCCATGAGACTGGGTCAACAAAGAAAGGGGGC  750

seq1  AGGCTTGGGCTGTGGGGGTGCAAGCCTTTAATCCTGGGGTGCAAGCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGGGCTGTGGGGGTGCAAGCCTTTAATCCTGGGGTGCAAGCCTTT  800

seq1  AATCCTGCCCTGGGGAGGCAGAAGCAGATGAACCAGAAGAATCCTGTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGCCCTGGGGAGGCAGAAGCAGATGAACCAGAAGAATCCTGTCAC  850

seq1  ACAAAGAAAGACAGACAGACAGACAGATGGGAA-GGAGGAAGGGAG  895
      ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACAAAGAAAGACAGACAGACAGACAGATGGGAAGGGAGGAAGGGAG  896