BAC Information

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BAC

Clone NameB6Ng01-220J06
Chromosome17 (Build37)
Map Location 55,494,049 - 55,495,010
singlet/doubletsinglet
Overlap genenone
Upstream gene1700025K24Rik, Trp53-ps, LOC240117, EG629178, LOC100043833, LOC100043485
Downstream geneLOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220J06.bB6Ng01-220J06.g
ACCGA036101GA036102
length681975
definitionB6Ng01-220J06.b B6Ng01-220J06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgatctctccaatacttttaacatgaagggctgttgtattttg
tcaaatgctttttctgcatctaaggagatgatcatgtgatttttttcttt
gcgcttgtttatataatggattacgttaatggattttcatatattgagtc
agccttgcatctctgggatgaagcctacttgattgtggtgaatgatggtt
ttgatgtgctcttggattcggttttcaagagttttattgagtatttttgc
atcaatattcataagcgagattgatctgaagttctctttttttgttgggt
ccttgtgtggtttaggtatcagagtaattgtggcatcatagagcaagtta
gtcagtgttccttctctttctattttatggaatagtttgaggaaaattgg
tatcaggtcttctttgaaggcctggtagaatttgcactaaatccatctgc
ccctgggtttgtttgtttgtttgtttgttttggttgggagatttttaatg
acttctatttacttatgggctatgggcctgtttagatagttttacctcct
cttgagttaactttggtatgtggtatctgtctagaaaaatcatccatttc
atctagattttccagggtttttttgagtataggctttttgtagtaggatt
ctgatgattttttgaatttcctctgtttcat
gaattcaagcaggtcaggaagcaggaactgatgcagaggccatgagagat
tttacttactggcttgcttcccctggcttgctcagcctgctctcttatag
aacccagagatggcaccacccacaaggcgacctccccacttgatcactaa
ttgagaaaatgccttacagctggatctcatggaggcacttccccaactga
agctcctttctctgtgataactccagcctgtgtcaagttggcacaaaact
agccagtacagtttctaaatttcctaaacttctggcaaagagtacatttt
atattgtccacacaatgtgaaaagaatcagaaatagttttaactattagt
cctgctctgttttagcagacatttagatgagtaagctctagttgcacaaa
aaaagttttaaagtgttcctttttattaatctagttctacagctacaatc
agaaacattgacttattgctgctaaaattgtttaaaaaaaaaagaaagaa
agaaaaatgatggtaggtcagtggtggcacatgcctttaatcccagcact
tgggaggcagaggcagatggatttctgagtttgaggccagcctgctctac
agagtgagttccaggacagccagagctatacacagaaaccctgtcttgaa
aaaccaaaaaaaaaaaaaaaattatgtgtggtattttctaagacatattg
tcaatcaaactatttctagaaaagttcatatttctagaagaaatcatttt
atttttctctccagtggcttttattcttaatttttctttagctttgaaaa
tactatatatacaaacaataaaattatgatcttattccacccccccccaa
catctcttgtaacattaacatctctaacattctccttccctgtatgggtt
tgcctttttcttccactttaattttcccataaaggttagagaatgaaagg
agtactccacagagttcttattatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_55494049_55495010
seq2: B6Ng01-220J06.g_69_1043

seq1  GAATTCAAGCAGGTCAGGAAGCAGGAACTGATGCAGAGGCCATGAGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCAGGTCAGGAAGCAGGAACTGATGCAGAGGCCATGAGAGAT  50

seq1  TTTACTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTTATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTTATAG  100

seq1  AACCCAGAGATGGCACCACCCACAAGGCGACCTCCCCACTTGATCACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGAGATGGCACCACCCACAAGGCGACCTCCCCACTTGATCACTAA  150

seq1  TTGAGAAAATGCCTTACAGCTGGATCTCATGGAGGCACTTCCCCAACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAATGCCTTACAGCTGGATCTCATGGAGGCACTTCCCCAACTGA  200

seq1  AGCTCCTTTCTCTGTGATAACTCCAGCCTGTGTCAAGTTGGCACAAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTTTCTCTGTGATAACTCCAGCCTGTGTCAAGTTGGCACAAAACT  250

seq1  AGCCAGTACAGTTTCTAAATTTCCTAAACTTCTGGCAAAGAGTACATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTACAGTTTCTAAATTTCCTAAACTTCTGGCAAAGAGTACATTTT  300

seq1  ATATTGTCCACACAATGTGAAAAGAATCAGAAATAGTTTTAACTATTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTCCACACAATGTGAAAAGAATCAGAAATAGTTTTAACTATTAGT  350

seq1  CCTGCTCTGTTTTAGCAGACATTTAGATGAGTAAGCTCTAGTTGCACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCTGTTTTAGCAGACATTTAGATGAGTAAGCTCTAGTTGCACAAA  400

seq1  AAAAGTTTTAAAGTGTTCCTTTTTATTAATCTAGTTCTACAGCTACAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTTAAAGTGTTCCTTTTTATTAATCTAGTTCTACAGCTACAATC  450

seq1  AGAAACATTGACTTATTGCTGCTAAAATTGTTTAAAAAAAAAAGAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATTGACTTATTGCTGCTAAAATTGTTTAAAAAAAAAAGAAAGAA  500

seq1  AGAAAAATGATGGTAGGTCAGTGGTGGCACATGCCTTTAATCCCAGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATGATGGTAGGTCAGTGGTGGCACATGCCTTTAATCCCAGCACT  550

seq1  TGGGAGGCAGAGGCAGATGGATTTCTGAGTTTGAGGCCAGCCTGCTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAGAGGCAGATGGATTTCTGAGTTTGAGGCCAGCCTGCTCTAC  600

seq1  AGAGTGAGTTCCAGGACAGCCAGAGCTATACACAGAAACCCTGTCTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTTCCAGGACAGCCAGAGCTATACACAGAAACCCTGTCTTGAA  650

seq1  AAACCAAAAAAAAAAAAAAAATTATGTGTGGTA-TTTCTAAGACATATTG  699
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAACCAAAAAAAAAAAAAAAATTATGTGTGGTATTTTCTAAGACATATTG  700

seq1  TCAATCAAACTATTTCTAGAAAAGTTCATA-TTCTAGAAGAAATCATTTT  748
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCAATCAAACTATTTCTAGAAAAGTTCATATTTCTAGAAGAAATCATTTT  750

seq1  ATTTTTCTCTCCAGTGGCTTTTATTCTTAATTTTTCTTTAGCTTTGAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTCTCCAGTGGCTTTTATTCTTAATTTTTCTTTAGCTTTGAAAA  800

seq1  TACTATATATACAAACAATAAAA-TATGATCATA-TCCA--CCCCCCCAA  844
      ||||||||||||||||||||||| ||||||| || ||||  |||||||||
seq2  TACTATATATACAAACAATAAAATTATGATCTTATTCCACCCCCCCCCAA  850

seq1  CATCTCCTGTAACA-TAACATCTCTAACATTCTCCCTCCCTGTAT-GGTT  892
      |||||| ||||||| |||||||||||||||||||| ||||||||| ||||
seq2  CATCTCTTGTAACATTAACATCTCTAACATTCTCCTTCCCTGTATGGGTT  900

seq1  TGCC-TTTTCTTCCACTTTTATTTT-CCATAAAGGTTAGAGAATGAAAGG  940
      |||| |||||||||||||| ||||| ||||||||||||||||||||||||
seq2  TGCCTTTTTCTTCCACTTTAATTTTCCCATAAAGGTTAGAGAATGAAAGG  950

seq1  AGTACT-CACAGAGT--CTATTATC  962
      |||||| ||||||||   |||||||
seq2  AGTACTCCACAGAGTTCTTATTATC  975