BAC Information

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BAC

Clone NameB6Ng01-220K02
Chromosome17 (Build37)
Map Location 59,003,589 - 59,004,727
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648
Downstream gene2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220K02.bB6Ng01-220K02.g
ACCGA036141GA036142
length1,1321,142
definitionB6Ng01-220K02.b B6Ng01-220K02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctggtgccaccctcctatttgcctttcacgtacagacataaaa
gtgtgtatgatggagaaactccatagcttactttccattgagcaaaacag
ggacctgcggataaacggaaattaccacccgtgagacaggcctctcatac
atctctgttcattagctgcaaaatctgttttcttgtttgccaccaacttt
cttgctcattccccactcatccatcaggtagttaattgagaagcttaaaa
aggtcgtttgaagcttggaattctgagcaaacaataaaaatggaaaatgt
tcagttggtatcaataggaaagaaaattaacccagcaggtatttgattga
tccaacactacatgggccttgctttaaacatgggtaagcagctctttctg
ccatggtgactattcctgctgtggcacactctatcacagagcactgtcaa
aatacccatgaacctctctcaagtccttccagatcctaattcaaagaaca
gttagttgtgttggggagacatatatagcagcaaagtgtttgcttgagga
cctaaagtccgatctgcacccattcaaaatctgggtgtgatgacatatct
gcaatcatgcattcataagtcagacacaagcagacacctagagctcactg
gccagccatcaattggtgagttgtgtgttcagcaagctatctgtctgaaa
acataaggtgaagaggctggagagatgacttagaggttaaaagcacttct
caatcttccaatgtggttctgttccgagctggcactcagggagtacacaa
tacctgtaattcaagcaccaggggccttaacacgttcttttagcctgtgg
agacacttgcacccatgtggttggcacaaattatacacaagaatattcac
ataatccaaaacaaaataatacaggaaaatatcctgatatgaactctgat
ctcacatgcacgggcatatacactcaactgcatatatacatgcatattca
caacaaacccacacattcccacatacaagactaaccaaatagacagcgaa
aattaactatagcattttatgtaatgtagccaataaagctgtttctacag
gggaatgtgcagctaaaacttctggccaggac
gaattctcacctgaggaatactaaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatgaaaaattcaggtgacagc
agatgcaggcgtggatgtggagaaagaggaacactgctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggggggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaataaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacaaagacaaagtttcgagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacacattgcataaactagcaagattttatcgaaag
gacccagatgtagctgtctcttgttgagacttatgcagggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacatggctccca
atggaggagctagagaaagtacccaatgaagctgaaggatctgcaaccct
atagttggtacacattatgactaatcagtaccccggagctcttacttagc
ttgcatatgtgtcaaagatgtcttagtctgccatcactgaaaagaaagcc
attggaacagctaaactttatatgtcccagtactatggaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_59003589_59004727
seq2: B6Ng01-220K02.b_29_1160 (reverse)

seq1  GTCCTTCGCCAGAAGTTCTATGCTGCACATTCCCCCTGTAGAAACAGCTT  50
      |||| | |||||||||| || |||||||||| |||||||||||||||| |
seq2  GTCC-TGGCCAGAAGTTTTA-GCTGCACATT-CCCCTGTAGAAACAGC-T  46

seq1  TTATTGGCTAACATTACATAAAATGCTATAGTTTATTTTTCTGTTGTTCT  100
      ||||||||| ||||||||||||||||||||||| |||||   | || |||
seq2  TTATTGGCT-ACATTACATAAAATGCTATAGTTAATTTT--CGCTG-TCT  92

seq1  ATTTGGTTTGTCTTGTATGTGTGAATGTGTGGGTTTG-TGTGAATATGCA  149
      |||||||| |||||||||||| ||||||||||||||| ||||||||||||
seq2  ATTTGGTTAGTCTTGTATGTGGGAATGTGTGGGTTTGTTGTGAATATGCA  142

seq1  TGTATATATGCAGGTGAGTGTATATGCCCGTGCATGTGGAGATCAGAGTT  199
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  TGTATATATGCAGTTGAGTGTATATGCCCGTGCATGT-GAGATCAGAGTT  191

seq1  CATATCAGGATATTTTCCTGTATTATTTTGTTTTGGATTATGTGAATATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAGGATATTTTCCTGTATTATTTTGTTTTGGATTATGTGAATATT  241

seq1  CTTGTGTAT-ATTTGTGCCAACCACATGGGTGCAAGTGTCTCCACAGGCT  298
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTATAATTTGTGCCAACCACATGGGTGCAAGTGTCTCCACAGGCT  291

seq1  AAAAGAACGTGTTAAGGCCCCTGGTGCTTGAATTACAGGTATTGTGTACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACGTGTTAAGGCCCCTGGTGCTTGAATTACAGGTATTGTGTACT  341

seq1  CCCTGAGTGCCAGCTCGGAACAGAACCACATTGGAAGATTGAGAAGTGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGTGCCAGCTCGGAACAGAACCACATTGGAAGATTGAGAAGTGCT  391

seq1  TTTAACCTCTAAGTCATCTCTCCAGCCTCTTCACCTTATGTTTTCAGACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCTCTAAGTCATCTCTCCAGCCTCTTCACCTTATGTTTTCAGACA  441

seq1  GATAGCTTGCTGAACACACAACTCACCAATTGATGGCTGGCCAGTGAGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTTGCTGAACACACAACTCACCAATTGATGGCTGGCCAGTGAGCT  491

seq1  CTAGGTGTCTGCTTGTGTCTGACTTATGAATGCATGATTGCAGATATGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGTCTGCTTGTGTCTGACTTATGAATGCATGATTGCAGATATGTC  541

seq1  ATCACACCCAGATTTTGAATGGGTGCAGATCGGACTTTAGGTCCTCAAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACCCAGATTTTGAATGGGTGCAGATCGGACTTTAGGTCCTCAAGC  591

seq1  AAACACTTTGCTGCTATATATGTCTCCCCAACACAACTAACTGTTCTTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTTGCTGCTATATATGTCTCCCCAACACAACTAACTGTTCTTTG  641

seq1  AATTAGGATCTGGAAGGACTTGAGAGAGGTTCATGGGTATTTTGACAGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGATCTGGAAGGACTTGAGAGAGGTTCATGGGTATTTTGACAGTG  691

seq1  CTCTGTGATAGAGTGTGCCACAGCAGGAATAGTCACCATGGCAGAAAGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGATAGAGTGTGCCACAGCAGGAATAGTCACCATGGCAGAAAGAG  741

seq1  CTGCTTACCCATGTTTAAAGCAAGGCCCATGTAGTGTTGGATCAATCAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTACCCATGTTTAAAGCAAGGCCCATGTAGTGTTGGATCAATCAAA  791

seq1  TACCTGCTGGGTTAATTTTCTTTCCTATTGATACCAACTGAACATTTTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCTGGGTTAATTTTCTTTCCTATTGATACCAACTGAACATTTTCC  841

seq1  ATTTTTATTGTTTGCTCAGAATTCCAAGCTTCAAACGACCTTTTTAAGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTGTTTGCTCAGAATTCCAAGCTTCAAACGACCTTTTTAAGCT  891

seq1  TCTCAATTAACTACCTGATGGATGAGTGGGGAATGAGCAAGAAAGTTGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATTAACTACCTGATGGATGAGTGGGGAATGAGCAAGAAAGTTGGT  941

seq1  GGCAAACAAGAAAACAGATTTTGCAGCTAATGAACAGAGATGTATGAGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACAAGAAAACAGATTTTGCAGCTAATGAACAGAGATGTATGAGAG  991

seq1  GCCTGTCTCACGGGTGGTAATTTCCGTTTATCCGCAGGTCCCTGTTTTGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCTCACGGGTGGTAATTTCCGTTTATCCGCAGGTCCCTGTTTTGC  1041

seq1  TCAATGGAAAGTAAGCTATGGAGTTTCTCCATCATACACACTTTTATGTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGAAAGTAAGCTATGGAGTTTCTCCATCATACACACTTTTATGTC  1091

seq1  TGTACGTGAAAGGCAAATAGGAGGGTGGCACCAGAGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGTACGTGAAAGGCAAATAGGAGGGTGGCACCAGAGAATTC  1132