BAC Information

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BAC

Clone NameB6Ng01-221L04
Chromosome17 (Build37)
Map Location 3,427,168 - 3,583,773
singlet/doubletdoublet
Overlap geneTiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik
Upstream geneLOC383196, LOC100040029, LOC432993, D030013I16Rik, LOC100040128, 1700024P12Rik, LOC435499, LOC224487, Rbm16, LOC665812, LOC621579, LOC624144
Downstream geneNox3, 4930470H14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221L04.bB6Ng01-221L04.g
ACCGA036920GA036921
length1871,124
definitionB6Ng01-221L04.b B6Ng01-221L04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,427,168 - 3,427,354)(3,582,671 - 3,583,773)
sequence
cacagagcagaatagtgccccacggtgtgccctctttgcagaggacagca
tcgtgcagtctgtcccagagcatcccaagaaggaacacgtgttctgcctg
agtaactcctgtggggacgtctacctattccaggtaccactgctgttctg
ccaatggaggggtgaggtgatggtgtgtgaatggtta
gaattcacacttttaattttccattacagaaatttccaattcgacttctt
cattttctatctgataaaaattaactccttcctgccagagtcatcatcag
agacaccaaaagaaatagcttgccaaataatattgtcaaacctttttgaa
agactatctttttctgtggctcgggaagatcagctattcaggaatatctt
catttctacaaaagaaagaccatactatttagaaacacagggacataaac
acatatttattacaccagagacagaacagcacaattggacactttaatta
cagattggatcttttgttgattttgttagaaagaactatcactgataaga
caccagacaattctcagttatttagggtgccgctcatcatctggctggtc
actcaatctcaatgttcccccctttgctcaaaacatttttccattgcaaa
accagcagacacaggcacgggacgtatgtgtttagtgtatttatatttcc
aaagccttttagaactaaacacacatacgcacacagggttggctttccac
tgtcttgttccttattcgctatactgctaacgtgagtgcggtattgttta
tcctttgcctaagaatctattagtatctttttttctgccttcaggtagaa
gcacagcaagaacactggagaaattatggtggtagcattgttctattctg
taaaaaatcaattgtattttttaatgaagtgttaacttgaaaaaatgaga
tttttttttactgctaatggaaccgtgtttataataacacctctctaacc
tggagataacttgtttcgtgacctcaacagtctaaaacatagccaaggaa
atagaattgaactaatcagtctctgagagccaaaacataataacaacaaa
aatagtgccgtcaccttcacagctaggggcaaggctgtctttaaatttcc
tttcgaagagccttcataaaacaataatttttatttaatctccctaaggc
cattaagaaggattgggcattattatccccatttttcagaataagataag
ggtaaccattataatatctcatcggaaacaaggcccaagtggccttgggg
caattgttattattggccagaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_3427168_3427354
seq2: B6Ng01-221L04.b_50_236

seq1  CACAGAGCAGAATAGTGCCCCACGGTGTGCCCTCTTTGCAGAGGACAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCAGAATAGTGCCCCACGGTGTGCCCTCTTTGCAGAGGACAGCA  50

seq1  TCGTGCAGTCTGTCCCAGAGCATCCCAAGAAGGAACACGTGTTCTGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGCAGTCTGTCCCAGAGCATCCCAAGAAGGAACACGTGTTCTGCCTG  100

seq1  AGTAACTCCTGTGGGGACGTCTACCTATTCCAGGTACCACTGCTGTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTCCTGTGGGGACGTCTACCTATTCCAGGTACCACTGCTGTTCTG  150

seq1  CCAATGGAGGGGTGAGGTGATGGTGTGTGAATGGTTA  187
      |||||||||||||||||||||||||||||||||||||
seq2  CCAATGGAGGGGTGAGGTGATGGTGTGTGAATGGTTA  187

seq1: chr17_3582671_3583773
seq2: B6Ng01-221L04.g_65_1188 (reverse)

seq1  TATTCT-GCCATAATTAACAA-TGCCCCA--GCCACT--GGCC-TGTTTC  43
      |||||| ||||  | |||||| |||||||  ||||||  |||| ||||||
seq2  TATTCTGGCCAATAATAACAATTGCCCCAAGGCCACTTGGGCCTTGTTTC  50

seq1  CGATGAGATATTAT-ATGGTTACC--TATCTTA-TCTGAAAAATGGGGAT  89
      |||||||||||||| |||||||||  ||||||| ||||||||||||||||
seq2  CGATGAGATATTATAATGGTTACCCTTATCTTATTCTGAAAAATGGGGAT  100

seq1  AATAATG-CCAATCCTTC-TAATGCCCTTAGGAAGATTAAAT-AAAATTA  136
      ||||||| |||||||||| ||||| ||||||| ||||||||| |||||||
seq2  AATAATGCCCAATCCTTCTTAATGGCCTTAGGGAGATTAAATAAAAATTA  150

seq1  T--GTTTATGAAGGCTCTTCGAAAGG--ATTTAAAGACAGCCT--GCCCT  180
      |   ||||||||||||||||||||||  |||||||||||||||   ||||
seq2  TTGTTTTATGAAGGCTCTTCGAAAGGAAATTTAAAGACAGCCTTGCCCCT  200

seq1  AGCTGTGAAGGTGACGGCACTATTTTTGTTGTTATTATGTTTTGGCTCTC  230
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGAAGGTGACGGCACTATTTTTGTTGTTATTATGTTTTGGCTCTC  250

seq1  AGAGACTGATTAGTTCAATTCTATTTCCTTGGCTATGTTTTAGACTGTTG  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGATTAGTTCAATTCTATTTCCTTGGCTATGTTTTAGACTGTTG  300

seq1  AGGTCACGAAACAAGTTATCTCCAGGTTAGAGAGGTGTTATTATAAACAC  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACGAAACAAGTTATCTCCAGGTTAGAGAGGTGTTATTATAAACAC  350

seq1  GGTTCCATTAGCAGT-AAAAAAAATCTCATTTTTTCAAGTTAACACTTCA  379
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGTTCCATTAGCAGTAAAAAAAAATCTCATTTTTTCAAGTTAACACTTCA  400

seq1  TTAAAAAATACAATTGATTTTTTACAGAATAGAACAATGCTACCACCATA  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATACAATTGATTTTTTACAGAATAGAACAATGCTACCACCATA  450

seq1  ATTTCTCCAGTGTTCTTGCTGTGCTTCTACCTGAAGGCAGAAAAAAAGAT  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCAGTGTTCTTGCTGTGCTTCTACCTGAAGGCAGAAAAAAAGAT  500

seq1  ACTAATAGATTCTTAGGCAAAGGATAAACAATACCGCACTCACGTTAGCA  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATAGATTCTTAGGCAAAGGATAAACAATACCGCACTCACGTTAGCA  550

seq1  GTATAGCGAATAAGGAACAAGACAGTGGAAAGCCAACCCTGTGTGCGTAT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCGAATAAGGAACAAGACAGTGGAAAGCCAACCCTGTGTGCGTAT  600

seq1  GTGTGTTTAGTTCTAAAAGGCTTTGGAAATATAAATACACTAAACACATA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTAGTTCTAAAAGGCTTTGGAAATATAAATACACTAAACACATA  650

seq1  CGTCCCGTGCCTGTGTCTGCTGGTTTTGCAATGGAAAAATGTTTTGAGCA  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCCGTGCCTGTGTCTGCTGGTTTTGCAATGGAAAAATGTTTTGAGCA  700

seq1  AAGGGGGGAACATTGAGATTGAGTGACCAGCCAGATGATGAGCGGCACCC  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGGAACATTGAGATTGAGTGACCAGCCAGATGATGAGCGGCACCC  750

seq1  TAAATAACTGAGAATTGTCTGGTGTCTTATCAGTGATAGTTCTTTCTAAC  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACTGAGAATTGTCTGGTGTCTTATCAGTGATAGTTCTTTCTAAC  800

seq1  AAAATCAACAAAAGATCCAATCTGTAATTAAAGTGTCCAATTGTGCTGTT  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAACAAAAGATCCAATCTGTAATTAAAGTGTCCAATTGTGCTGTT  850

seq1  CTGTCTCTGGTGTAATAAATATGTGTTTATGTCCCTGTGTTTCTAAATAG  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGGTGTAATAAATATGTGTTTATGTCCCTGTGTTTCTAAATAG  900

seq1  TATGGTCTTTCTTTTGTAGAAATGAAGATATTCCTGAATAGCTGATCTTC  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCTTTCTTTTGTAGAAATGAAGATATTCCTGAATAGCTGATCTTC  950

seq1  CCGAGCCACAGAAAAAGATAGTCTTTCAAAAAGGTTTGACAATATTATTT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCCACAGAAAAAGATAGTCTTTCAAAAAGGTTTGACAATATTATTT  1000

seq1  GGCAAGCTATTTCTTTTGGTGTCTCTGATGATGACTCTGGCAGGAAGGAG  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCTATTTCTTTTGGTGTCTCTGATGATGACTCTGGCAGGAAGGAG  1050

seq1  TTAATTTTTATCAGATAGAAAATGAAGAAGTCGAATTGGAAATTTCTGTA  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTATCAGATAGAAAATGAAGAAGTCGAATTGGAAATTTCTGTA  1100

seq1  ATGGAAAATTAAAAGTGTGAATTC  1103
      ||||||||||||||||||||||||
seq2  ATGGAAAATTAAAAGTGTGAATTC  1124