BAC Information

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BAC

Clone NameB6Ng01-222F03
Chromosome17 (Build37)
Map Location 59,483,915 - 59,668,725
singlet/doubletdoublet
Overlap geneLOC100043537
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
Downstream geneLOC100043542, LOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222F03.bB6Ng01-222F03.g
ACCGA037372GA037373
length1,2171,091
definitionB6Ng01-222F03.b B6Ng01-222F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,483,915 - 59,485,147)(59,667,632 - 59,668,725)
sequence
gaattctatgcatatgtcaagtgtgttccttaaaagattaatatgggact
ctctgagaatttgttcattgctccacttgttttcagctccttgttctcat
tccttattcactctcctgccctcctactccctcctctcctccttaactct
ccttttctcctctttgctttcaaactctccaggagctgagaccccatagc
atacgtgtatatccttaaatcttaatcaaacacagccataataaaagtgg
gtcacgccattcttctaatggttataatccccttgtgctggaattcagcc
atgacctcatgacctcatatgagcaagtcagtcactctaacactgaagtg
ggtaggcaggcccactacagctttatatggtctaggaaactgtctactat
gctttgattttatttcactaaataagtaacttgcgtatatttattttcat
tttgattttgtttgaggaagaatgaaattgaatcgggcgaagcatctaga
tggaggtggggggaagagaataaatatgttcaaaataaattacatgattt
ttttttaaattttgaaaacatttaccttaaaaatggacataattatatgg
tctgaacattgaagcagataagcttccttatttgtcagaatagtacctct
taaagatctggaaacattttatataacataaactccataaatgcatttga
cccattttcattgactttatcaaaatgtttcagaaaaaggttttagtttc
aagatgatttatgggtacttttagtcaaccctagaaatgacaacacattg
cctaaataataaataaataaataaataaataaacaacaatggacacaatg
tctcatagtggcaagctctggaaaagtcccaatgtaacttctctggcatt
ggtgaaagaggaacaggacaatcagggaggggtattctcattaacacaaa
ttaaattattttccagtatctggcagcaattacttattcttacttattat
attaaatggtattcagatgaaagagctctcatttgcagacttgatttagc
gtgaaccaaaatctaagtcaccagatcatctttcaaatactgctgtagaa
gatcttcactcagtttcacgaaacattgcaggtatttgtcacatacccca
atgtcaatccaggctattagtacaatactgagtgacatggtccattcctg
gcgaggaggaaaagtac

gaattctgtgtttcatacgaaatgaggcactatactctgcatattttctt
aggatctttacccttttataaaattagataaataagcccccaaacacttt
tgtgacttctttgatttatatttatacaaagcaaaacaaataaacttaac
ctgcactggtacttccttggtataattatttttgcgttctgtaaactcat
cttaggtacatataccaatcctcttttataaacttatcaagcattgcaat
ttttgacaaataaactacacaaattttattcaatccaatacttctcaaat
ctaaagttgtagtatgtttgtgccactacaataaaaactcaggataattt
agaaacaatggaaatttatgctttgtgatttcaaaatcgagcagtccaat
ttctagtagcatacacatacacacacaaacacacacaccagtgcctggtg
agactcttctctgtttcaccattctatgttgctgctgcattctattggag
gtaaaaaaacaaaacaacaacaacaacaaaaaccatttcttgtccttcac
cttgaaaatggttcagcaataaacaaaaccaaaactatgaagaactccat
ctgtaattattttatactcataatgtaaccatttactattaatgaaaact
tccatcatgctctatttcataatcaattgataggaatttgaaggacattg
gattgtgtccagtgattctcaacctgtgggtctgagagactctggggagg
aagaacatattttaacagaggttgcctgaggccattagaaaacaccacta
tttacattgcaattcataacagtaccaaaactaccactataaagtaacag
caaaaataattttttgtttgggtggcagcattagcaaggttgacaatccc
tgaaaggttctcacttatcagaatgtattgacatcataaaaggacactta
tttagtaggcctgaattagaggtaggaagtcactggtctctaaattttct
cttttattctttggatatatatatacacattctcctcctcttttccctct
aaacctccttaatatggggtttggagtcatgggctcttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_59483915_59485147
seq2: B6Ng01-222F03.b_44_1260

seq1  GAATTCTATGCATATGTCAAGTGTGTTCCTTAAAAGATTAATATGGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGCATATGTCAAGTGTGTTCCTTAAAAGATTAATATGGGACT  50

seq1  CTCTGAGAATTTGTTCATTGCTCCACTTGTTTTCAGCTCCTTGTTCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGAATTTGTTCATTGCTCCACTTGTTTTCAGCTCCTTGTTCTCAT  100

seq1  TCCTTATTCACTCTCCTGCCCTCCTACTCCCTCCTCTCCTCCTTAACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATTCACTCTCCTGCCCTCCTACTCCCTCCTCTCCTCCTTAACTCT  150

seq1  CCTTTTCTCCTCTTTGCTTTCAAACTCTCCAGGAGCTGAGACCCCATAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTCCTCTTTGCTTTCAAACTCTCCAGGAGCTGAGACCCCATAGC  200

seq1  ATACGTGTATATCCTTAAATCTTAATCAAACACAGCCATAATAAAAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTGTATATCCTTAAATCTTAATCAAACACAGCCATAATAAAAGTGG  250

seq1  GTCACGCCATTCTTCTAATGGTTATAATCCCCTTGTGCTGGAATTCAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGCCATTCTTCTAATGGTTATAATCCCCTTGTGCTGGAATTCAGCC  300

seq1  ATGACCTCATGACCTCATATGAGCAAGTCAGTCACTCTAACACTGAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTCATGACCTCATATGAGCAAGTCAGTCACTCTAACACTGAAGTG  350

seq1  GGTAGGCAGGCCCACTACAGCTTTATATGGTCTAGGAAACTGTCTACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGCAGGCCCACTACAGCTTTATATGGTCTAGGAAACTGTCTACTAT  400

seq1  GCTTTGATTTTATTTCACTAAATAAGTAACTTGCGTATATTTATTTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGATTTTATTTCACTAAATAAGTAACTTGCGTATATTTATTTTCAT  450

seq1  TTTGATTTTGTTTGAGGAAGAATGAAATTGAATCGGGCGAAGCATCTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTTGTTTGAGGAAGAATGAAATTGAATCGGGCGAAGCATCTAGA  500

seq1  TGGAGGTGGGGGGAAGAGAATAAATATGTTCAAAATAAATTACATGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTGGGGGGAAGAGAATAAATATGTTCAAAATAAATTACATGATTT  550

seq1  TTTTTTAAATTTTGAAAACATTTACCTTAAAAATGGACATAATTATATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATTTTGAAAACATTTACCTTAAAAATGGACATAATTATATGG  600

seq1  TCTGAACATTGAAGCAGATAAGCTTCCTTATTTGTCAGAATAGTACCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACATTGAAGCAGATAAGCTTCCTTATTTGTCAGAATAGTACCTCT  650

seq1  TAAAGATCTGGAAACATTTTATATAACATAAACTCCATAAATGCATTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATCTGGAAACATTTTATATAACATAAACTCCATAAATGCATTTGA  700

seq1  CCCATTTTCATTGACTTTATCAAAATGTTTCAGAAAAAGGTTTTAGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTCATTGACTTTATCAAAATGTTTCAGAAAAAGGTTTTAGTTTC  750

seq1  AAGATGATTTATGGGTACTTTTAGTCAACCCTAGAAATGACAACACATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGATTTATGGGTACTTTTAGTCAACCCTAGAAATGACAACACATTG  800

seq1  CCTAAATAAATAAATAAATAAATAAATAAATAAACAACAATGGACACAAT  850
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAT-AATAAATAAATAAATAAATAAATAAACAACAATGGACACAAT  849

seq1  GTCTCATAGTGGCAAGCTCTGGAAAAGTCCCAATGTAACTTCTCTGGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATAGTGGCAAGCTCTGGAAAAGTCCCAATGTAACTTCTCTGGCAT  899

seq1  TGGTGAAAGAGGAACAGGACAAATCAGGGAGGGGTATTCTCATTAACACA  950
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  TGGTGAAAGAGGAACAGGAC-AATCAGGGAGGGGTATTCTCATTAACAC-  947

seq1  AAATTAAATTATTTTCCAGTATCTGGCAGGCAATTAACTATTCTTAACTT  1000
      |||||||||||||||||||||||||||| |||||||  ||||||| ||||
seq2  AAATTAAATTATTTTCCAGTATCTGGCA-GCAATTACTTATTCTT-ACTT  995

seq1  ATTATATTAAATGGTATTCAGATGAAAGAGCTCTCCATTTGCAGACTTGA  1050
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTATATTAAATGGTATTCAGATGAAAGAGCTCT-CATTTGCAGACTTGA  1044

seq1  TTTAGCGTGGACACAAATCTAGGTCACAAGATCATCTTCCAAATACCTGC  1100
      ||||||||| ||  ||||||| ||||| |||||||||| |||||| ||||
seq2  TTTAGCGTGAACCAAAATCTAAGTCACCAGATCATCTTTCAAATA-CTGC  1093

seq1  TGTAGAGAATCTTCACTCAGTTTTCCACGAAACATTGCAGTTATTTGTCA  1150
      ||||||  |||||||||||||||  ||||||||||||||| |||||||||
seq2  TGTAGAAGATCTTCACTCAGTTT--CACGAAACATTGCAGGTATTTGTCA  1141

seq1  CATAACCCACAATGTCAATCCCAGGGTTATTTTAGTGTACAAATCAGTGA  1200
      ||||  || ||||||||||||   || ||||     ||||||   | |||
seq2  CATA--CCCCAATGTCAATCC--AGGCTATT----AGTACAA--TACTGA  1181

seq1  GTGAC-TGTTCCATATCTG--GAGGAGGAAAAGTAC  1233
      ||||| || |||||  |||  |||||||||||||||
seq2  GTGACATGGTCCATTCCTGGCGAGGAGGAAAAGTAC  1217


seq1: chr17_59667632_59668725
seq2: B6Ng01-222F03.g_67_1157 (reverse)

seq1  AAAAAGAGGCCATGAACTCAAA-CCCATA-TAAGGAAGGGTTTTAAGAGG  48
      |||||||| ||||||   |||| |||||| ||||||  |||||  |||||
seq2  AAAAAGAGCCCATGACTCCAAACCCCATATTAAGGA--GGTTT--AGAGG  46

seq1  GAAAAGGAGA-GAGAATGTTGTAATAATAT-TATAT-CAAAGAATAAAAG  95
      ||||||  || ||||||| |||    |||| ||||| |||||||||||||
seq2  GAAAAGAGGAGGAGAATG-TGT----ATATATATATCCAAAGAATAAAAG  91

seq1  AGAAAATTTAAGAGACCAGTGACTTCCTACCTCTAATTCAGGCCTACTAA  145
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTT-AGAGACCAGTGACTTCCTACCTCTAATTCAGGCCTACTAA  140

seq1  ATAAGTGT-CTTTTATGATGTCAATACATTCTGATAAGTGAGAACC-TTC  193
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  ATAAGTGTCCTTTTATGATGTCAATACATTCTGATAAGTGAGAACCTTTC  190

seq1  AGGGATTGTCAACCTTGCTAATGCTGCCACCCAAACAAAAAATTATTTTT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTGTCAACCTTGCTAATGCTGCCACCCAAACAAAAAATTATTTTT  240

seq1  GCTGTTACTTTATAGTGGTAGTTTTGGTACTGTTATGAATTGCAATGTAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTACTTTATAGTGGTAGTTTTGGTACTGTTATGAATTGCAATGTAA  290

seq1  ATAGTGGTGTTTTCTAATGGCCTCAGGCAACCTCTGTTAAAATATGTTCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGGTGTTTTCTAATGGCCTCAGGCAACCTCTGTTAAAATATGTTCT  340

seq1  TCCTCCCCAGAGTCTCTCAGACCCACAGGTTGAGAATCACTGGACACAAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCAGAGTCTCTCAGACCCACAGGTTGAGAATCACTGGACACAAT  390

seq1  CCAATGTCCTTCAAATTCCTATCAATTGATTATGAAATAGAGCATGATGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTCCTTCAAATTCCTATCAATTGATTATGAAATAGAGCATGATGG  440

seq1  AAGTTTTCATTAATAGTAAATGGTTACATTATGAGTATAAAATAATTACA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCATTAATAGTAAATGGTTACATTATGAGTATAAAATAATTACA  490

seq1  GATGGAGTTCTTCATAGTTTTGGTTTTGTTTATTGCTGAACCATTTTCAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGTTCTTCATAGTTTTGGTTTTGTTTATTGCTGAACCATTTTCAA  540

seq1  GGTGAAGGACAAGAAATGGTTTTTGTTGTTGTTGTTGTTTTGTTTTTTTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGGACAAGAAATGGTTTTTGTTGTTGTTGTTGTTTTGTTTTTTTA  590

seq1  CCTCCAATAGAATGCAGCAGCAACATAGAATGGTGAAACAGAGAAGAGTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAATAGAATGCAGCAGCAACATAGAATGGTGAAACAGAGAAGAGTC  640

seq1  TCACCAGGCACTGGTGTGTGTGTTTGTGTGTGTATGTGTATGCTACTAGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGGCACTGGTGTGTGTGTTTGTGTGTGTATGTGTATGCTACTAGA  690

seq1  AATTGGACTGCTCGATTTTGAAATCACAAAGCATAAATTTCCATTGTTTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGACTGCTCGATTTTGAAATCACAAAGCATAAATTTCCATTGTTTC  740

seq1  TAAATTATCCTGAGTTTTTATTGTAGTGGCACAAACATACTACAACTTTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATCCTGAGTTTTTATTGTAGTGGCACAAACATACTACAACTTTA  790

seq1  GATTTGAGAAGTATTGGATTGAATAAAATTTGTGTAGTTTATTTGTCAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAGAAGTATTGGATTGAATAAAATTTGTGTAGTTTATTTGTCAAA  840

seq1  AATTGCAATGCTTGATAAGTTTATAAAAGAGGATTGGTATATGTACCTAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCAATGCTTGATAAGTTTATAAAAGAGGATTGGTATATGTACCTAA  890

seq1  GATGAGTTTACAGAACGCAAAAATAATTATACCAAGGAAGTACCAGTGCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTTTACAGAACGCAAAAATAATTATACCAAGGAAGTACCAGTGCA  940

seq1  GGTTAAGTTTATTTGTTTTGCTTTGTATAAATATAAATCAAAGAAGTCAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGTTTATTTGTTTTGCTTTGTATAAATATAAATCAAAGAAGTCAC  990

seq1  AAAAGTGTTTGGGGGCTTATTTATCTAATTTTATAAAAGGGTAAAGATCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTTTGGGGGCTTATTTATCTAATTTTATAAAAGGGTAAAGATCC  1040

seq1  TAAGAAAATATGCAGAGTATAGTGCCTCATTTCGTATGAAACACAGAATT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAATATGCAGAGTATAGTGCCTCATTTCGTATGAAACACAGAATT  1090

seq1  C  1094
      |
seq2  C  1091


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