BAC Information

Click to search

BAC

Clone NameB6Ng01-222P21
Chromosome17 (Build37)
Map Location 74,691,523 - 74,795,899
singlet/doubletdoublet
Overlap geneMemo1, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6
Upstream geneCapn13, LOC100043666, Galnt14, Ehd3, LOC240160, Xdh, Srd5a2, EG668716
Downstream geneNlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27, LOC100043672, Ltbp1, EG621988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222P21.bB6Ng01-222P21.g
ACCGA037858GA037859
length1,1151,005
definitionB6Ng01-222P21.b B6Ng01-222P21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,691,523 - 74,692,624)(74,794,905 - 74,795,899)
sequence
gaattccttgagagaaagcagaagtttatagcaccctcagccaatggatc
taacagcatataacaaggggtaaataacaaaaagacatgtgaatgagtgc
atgcaatataaatgtacactttttttcttaatgaaatagctagttaactg
aactcaatgtggctttactcttatttcactcaataatcgaatactttcta
tgtgtacaacctgaacactggaaaagatacaaaatgacaatcaacaaaca
cattcttcctattcctcagttttttattgactggtctagagaaacaatag
cacaatacaaataaaaagtcccaagagtaggtcatttcaacctggctaca
ctattctatcctacagatacagtcatcagaccaactttacattacatacc
tataagtttgcttcattcatcttaaggatacaaattaagcttctaaaact
aaactgctttaagtttaccctaatttcctcaatatcagtcaaacttaaaa
agactggccaggaagtgatggtgcatgcctttgatcccagcactgggaag
cagagccaagcagatctctgaatccaagggagtttcagtacagccagggc
aacacagagaaaccctaggtgagtcgcacacaccccaaaaattcatacac
ctgaattccagttaaaggtattatttaattcacccagattttagggaaaa
aatgtaactacctgcctatttactaataagtatctacagataggattttt
ttttttaccagattaaagactacatcttgtatgtaagtaaactctaagga
attctaagaccaaaaagtgtgaactatacccaattttactacccatatat
atgcttaacaatctaaaactttccctagaatatttgccccacattccaaa
gcaagcaacaacaaaagcttaaaacattttgtaacaaatgcacaggaaca
caataaataaatgctaaaaagatagtcgtgaatgggaacaatgttgactt
ttctaaattctcaaaacaatactggcggaaaaatcctttctacttaaaat
tagcccaggaggtggtggccacatgctttaattcctagcactttggaagc
aagaaggcaggcgga
gaattcttttacagatcttcattagacattttaatatataatattttaat
gttttggtttttcgtttttttcgagacagggtttctctgtatagccctgg
ctgtcctggaactcactttgtagaccaggctggcctccaaagaaggaaac
tttatggtggcaacagtaagaacacaaatatgtcattgtcgtatgtaagt
taccagtaagggctcaatgagtttttgtgatcgtttcaaagggcggtcag
cactctgacatctgaaaacgcaaccacccgttcacctttacagaatactg
agataattatgtttgacttacgcgttttgttgtttggttttagattatgg
ggtttttttgtttttttttttcgggtcagagtctctatttaactcagggt
gaacttcgaagtgcaatcctcctgcctcagtttcctgagttgtaggccaa
aggcatgtgccaaaacactcagcttaataattaactcaataatttttagg
aaaaacctgacattccaacaaccatagcgtatactagaacctttcccgag
ctgctccactaaccctttctgtagccgctgctcagtgccgagctattcaa
acactgaaaagcaaacgagtgaacacgccctagaaagccccacgcaagcc
tcaagtcgctgatggcgttcacttgttctcagaggaagctttaattttaa
cattaggcaaatctggcatttcccagctgtagaggcacagagcaggaacc
cttcaagaacccgagcgctgggaaccccagcgcaggcccgaccacgcggt
tccgagcagctgcggtacagcagggccgctcgagcgaggaaagcaggagg
taaacatcccgcaagaattcccgcacaccccacggccaactcacccatgg
taagggagccgtacagccttcccgccgggaagacgctcctgagaagttcg
cattctcaagcggaaggggcgggcctttcgaaatccgattggttgcaagg
cgaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_74691523_74692624
seq2: B6Ng01-222P21.b_47_1161

seq1  GAATTCCTTGAGAGAAAGCAGAAGTTTATAGCACCCTCAGCCAATGGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGAGAGAAAGCAGAAGTTTATAGCACCCTCAGCCAATGGATC  50

seq1  TAACAGCATATAACAAGGGGTAAATAACAAAAAGACATGTGAATGAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCATATAACAAGGGGTAAATAACAAAAAGACATGTGAATGAGTGC  100

seq1  ATGCAATATAAATGTACACTTTTTTTCTTAATGAAATAGCTAGTTAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATATAAATGTACACTTTTTTTCTTAATGAAATAGCTAGTTAACTG  150

seq1  AACTCAATGTGGCTTTACTCTTATTTCACTCAATAATCGAATACTTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAATGTGGCTTTACTCTTATTTCACTCAATAATCGAATACTTTCTA  200

seq1  TGTGTACAACCTGAACACTGGAAAAGATACAAAATGACAATCAACAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACAACCTGAACACTGGAAAAGATACAAAATGACAATCAACAAACA  250

seq1  CATTCTTCCTATTCCTCAGTTTTTTATTGACTGGTCTAGAGAAACAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCCTATTCCTCAGTTTTTTATTGACTGGTCTAGAGAAACAATAG  300

seq1  CACAATACAAATAAAAAGTCCCAAGAGTAGGTCATTTCAACCTGGCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATACAAATAAAAAGTCCCAAGAGTAGGTCATTTCAACCTGGCTACA  350

seq1  CTATTCTATCCTACAGATACAGTCATCAGACCAACTTTACATTACATACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTATCCTACAGATACAGTCATCAGACCAACTTTACATTACATACC  400

seq1  TATAAGTTTGCTTCATTCATCTTAAGGATACAAATTAAGCTTCTAAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTTTGCTTCATTCATCTTAAGGATACAAATTAAGCTTCTAAAACT  450

seq1  AAACTGCTTTAAGTTTACCCTAATTTCCTCAATATCAGTCAAACTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTTTAAGTTTACCCTAATTTCCTCAATATCAGTCAAACTTAAAA  500

seq1  AGACTGGCCAGGAAGTGATGGTGCATGCCTTTGATCCCAGCACTGGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCCAGGAAGTGATGGTGCATGCCTTTGATCCCAGCACTGGGAAG  550

seq1  CAGAGCCAAGCAGATCTCTGAATCCAAGGGAGTTTCAGTACAGCCAGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCAAGCAGATCTCTGAATCCAAGGGAGTTTCAGTACAGCCAGGGC  600

seq1  AACACAGAGAAACCCTAGGTGAGTCGCACACACCCCAAAAATTCATACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGAGAAACCCTAGGTGAGTCGCACACACCCCAAAAATTCATACAC  650

seq1  CTGAATTCCAGTTAAAGGTATTATTTAATTCACCCAGATTTTAGGGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTCCAGTTAAAGGTATTATTTAATTCACCCAGATTTTAGGGAAAA  700

seq1  AATGTAACTACCTGCCTATTTACTAATAAGTATCTACAGATAGGATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAACTACCTGCCTATTTACTAATAAGTATCTACAGATAGGATTTTT  750

seq1  TTTTTTACCAGATTAAAGACTACATCTTGTATGTAAGTAAACTCTAAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACCAGATTAAAGACTACATCTTGTATGTAAGTAAACTCTAAGGA  800

seq1  ATTCTAAGACC-AAAAGTGTGAACTATACCCAATTTTACTACCCATATAT  849
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAGACCAAAAAGTGTGAACTATACCCAATTTTACTACCCATATAT  850

seq1  ATGCTTAACAATCTAAAAC-TTCCCTAGAATATTTG-CCCACATTCCAAA  897
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  ATGCTTAACAATCTAAAACTTTCCCTAGAATATTTGCCCCACATTCCAAA  900

seq1  GCAAGCAACAACAAAAGCTTAAAACA-TTTGTAACAAATGCACAGGAACA  946
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCAAGCAACAACAAAAGCTTAAAACATTTTGTAACAAATGCACAGGAACA  950

seq1  CAATAAATAAATGCT-AAAAGATAGCCGTGAATGGGAACAATG-TGAC-T  993
      ||||||||||||||| ||||||||| ||||||||||||||||| |||| |
seq2  CAATAAATAAATGCTAAAAAGATAGTCGTGAATGGGAACAATGTTGACTT  1000

seq1  TTCT-AATTCTCCAAAACATACT-GCGGAAAAAACC-TTCTACTTAAAAA  1040
      |||| ||||||| |||  ||||| ||||||||| || |||||||||||| 
seq2  TTCTAAATTCTCAAAACAATACTGGCGGAAAAATCCTTTCTACTTAAAAT  1050

seq1  TAAGCCAGGAGGTGGT-GCCACACGCCTTTAATCCCAGCACTTGGGAGGC  1089
      ||  |||||||||||| |||||| || || | ||| ||||||| ||| ||
seq2  TAGCCCAGGAGGTGGTGGCCACATGCTTTAATTCCTAGCACTTTGGAAGC  1100

seq1  A--GAGGCAGGCGGA  1102
      |   |||||||||||
seq2  AAGAAGGCAGGCGGA  1115

seq1: chr17_74794905_74795899
seq2: B6Ng01-222P21.g_69_1073 (reverse)

seq1  CCTCGCCCTGCAACCAATCGGA-TTCTGAAGGCCCGCCCCTTCCGCTTGA  49
      | ||||| |||||||||||||| |||  ||||||||||||||||||||||
seq2  CTTCGCCTTGCAACCAATCGGATTTCGAAAGGCCCGCCCCTTCCGCTTGA  50

seq1  GAAATGCG-ACTTCTCA-GAGCGTCTT-CCGGCGGGA--GCTGTACGGCT  94
      | |||||| |||||||| ||||||||| |||||||||  |||||||||||
seq2  G-AATGCGAACTTCTCAGGAGCGTCTTCCCGGCGGGAAGGCTGTACGGCT  99

seq1  -CCTTACCAT-GGTGAGTTGGCCGTGGGGTGTGCGGG-ATTCTTGCGGGA  141
       ||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  CCCTTACCATGGGTGAGTTGGCCGTGGGGTGTGCGGGAATTCTTGCGGGA  149

seq1  TGTTTCCCTCCTGC-TTCCTCGCTCGAGC-GCCCTGCTGTACCGCAGCTG  189
      ||||| |||||||| |||||||||||||| ||||||||||||||||||||
seq2  TGTTTACCTCCTGCTTTCCTCGCTCGAGCGGCCCTGCTGTACCGCAGCTG  199

seq1  CTCGGAACCGCGTGGTCGGGCCTGCGCTGGGGTTCCCAGCGCTCGGGTTC  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGAACCGCGTGGTCGGGCCTGCGCTGGGGTTCCCAGCGCTCGGGTTC  249

seq1  TTGAAGGGTTCCTGCTCTGTGCCTCTACAGCTGGGAAATGCCAGATTTGC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGGTTCCTGCTCTGTGCCTCTACAGCTGGGAAATGCCAGATTTGC  299

seq1  CTAATGTTAAAATTAAAGCTTCCTCTGAGAACAAGTGAACGCCATCAGCG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTTAAAATTAAAGCTTCCTCTGAGAACAAGTGAACGCCATCAGCG  349

seq1  ACTTGAGGCTTGCGTGGGGCTTTCTAGGGCGTGTTCACTCGTTTGCTTTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGGCTTGCGTGGGGCTTTCTAGGGCGTGTTCACTCGTTTGCTTTT  399

seq1  CAGTGTTTGAATAGCTCGGCACTGAGCAGCGGCTACAGAAAGGGTTAGTG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTGAATAGCTCGGCACTGAGCAGCGGCTACAGAAAGGGTTAGTG  449

seq1  GAGCAGCTCGGGAAAGGTTCTAGTATACGCTATGGTTGTTGGAATGTCAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCTCGGGAAAGGTTCTAGTATACGCTATGGTTGTTGGAATGTCAG  499

seq1  GTTTTTCCTAAAAATTATTGAGTTAATTATTAAGCTGAGTGTTTTGGCAC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCTAAAAATTATTGAGTTAATTATTAAGCTGAGTGTTTTGGCAC  549

seq1  ATGCCTTTGGCCTACAACTCAGGAAACTGAGGCAGGAGGATTGCACTTCG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTGGCCTACAACTCAGGAAACTGAGGCAGGAGGATTGCACTTCG  599

seq1  AAGTTCACCCTGAGTTAAATAGAGACTCTGACCCGAAAAAAAAAAACAAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCACCCTGAGTTAAATAGAGACTCTGACCCGAAAAAAAAAAACAAA  649

seq1  AAAACCCCATAATCTAAAACCAAACAACAAAACGCGTAAGTCAAACATAA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCCATAATCTAAAACCAAACAACAAAACGCGTAAGTCAAACATAA  699

seq1  TTATCTCAGTATTCTGTAAAGGTGAACGGGTGGTTGCGTTTTCAGATGTC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCAGTATTCTGTAAAGGTGAACGGGTGGTTGCGTTTTCAGATGTC  749

seq1  AGAGTGCTGACCGCCCTTTGAAACGATCACAAAAACTCATTGAGCCCTTA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCTGACCGCCCTTTGAAACGATCACAAAAACTCATTGAGCCCTTA  799

seq1  CTGGTAACTTACATACGACAATGACATATTTGTGTTCTTACTGTTGCCAC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAACTTACATACGACAATGACATATTTGTGTTCTTACTGTTGCCAC  849

seq1  CATAAAGTTTCCTTCTTTGGAGGCCAGCCTGGTCTACAAAGTGAGTTCCA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGTTTCCTTCTTTGGAGGCCAGCCTGGTCTACAAAGTGAGTTCCA  899

seq1  GGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAAACGAAAAAC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAAACGAAAAAC  949

seq1  CAAAACATTAAAATATTATATATTAAAATGTCTAATGAAGATCTGTAAAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATTAAAATATTATATATTAAAATGTCTAATGAAGATCTGTAAAA  999

seq1  GAATTC  995
      ||||||
seq2  GAATTC  1005