BAC Information

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BAC

Clone NameB6Ng01-223C23
Chromosome17 (Build37)
Map Location 26,240,216 - 26,377,577
singlet/doubletdoublet
Overlap geneTmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643
Upstream geneTelo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609
Downstream geneLuc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223C23.bB6Ng01-223C23.g
ACCGA037999GA038000
length1,0981,162
definitionB6Ng01-223C23.b B6Ng01-223C23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,376,487 - 26,377,577)(26,240,216 - 26,241,327)
sequence
gaattctacctaataaccagaaaattgatgctgacagttggtgtgactca
tctctggagtgcagtgtacagtagaatgttcagaggttgggcatgtggga
gaagtgtgctagctcctcactggttatctgttgactttagtcttggtagt
tagttcacagagctggtgttctctgcttttgtgaatgtatagatatgtac
attataaaagtctttttaaaaaatgataaagcagtcaggcttggaggctc
cagcctataatcttatctttgcggaggtagagatatgagtttgaggtcag
tctcagctacatagcaaactgaaggctagcctgggttatgagaccctgtg
gaaaaaaaaaacaaaaaccaggaaacaacaaaagaagataagcatggccg
ggcgtggtggcacacgcctttaattccagagctcgggaggcagaggcaaa
agataagtaaattgagccaatgctttaagcaaatgaatgcaaaattagtt
ataatttatcttaatagtttccctactaaatacaggaatgaaaaggaata
ataccgattgatgggggaattgcaggaaataagtctaatctagacttcag
ggaaaagtttattccttgggctaatcagtaagacctacctgaggctgttt
ttcatccaagcatcaggtctgtgtgtgctgggaaattttgtgtttcagtc
agggaaccatgaccttaaaatttgtttcccttggagaactggctgaggct
ctgcccttgttttgagattgtgctttgtgaagagagtcaatggtggttcc
ctgtaaacaactgaacactaactatctttgtctcctatctgcttggctca
gctagaaaaccgggtgctgcctggctggtttttgtgggtgtctctctcaa
gcatctcctattggaatgcagttagagtagagggagcagtcctggaggtg
gcacagtcacacagtgtaaaaagacatcctttgttcttcgtctgctgctt
ttgtaaccttggtaatcctggaactgagtttgaaggccagtctttatcat
tattatttattattatggtaagttacaccggtagctgtcttcaaacac
gaattccttgaggcaagtttgatcttcactgtcaggttatctaatttcat
ttttttgtttctacttttgttaactatttaacaaaacatgaccaacaaca
gccaccaaaaaaacaacaaaaaacaacaacaacccacctgaactaccaac
aacaaccaaccaacaacccctcttccccagagccctagcatttatatagt
ctctgaagaatccccagaattccaaacgttgcacaatcacagaaaattat
ctgcagctggcaaaattgtgctctgctaaataaagtgtgaggcaaatcaa
attagcctctgtggacaatctgaagcaggccaatatcccccacctgggaa
atgaaaacatacttctataatatttgtcattttttaaaaaaaggaaccag
ggctggagagatggctcagtggttaagagcaccaactgctctgctcttct
gaaggacctgagttcaaatcccagcaaccacatggtggctcacatctacc
tgtaatgggatctgatgccctcttctggtgtacttatgtacaaaagtaaa
taaatctttgggccgaagtgagcagggaccatcagagcgagcagagcaga
ggtcctaaattcaattcccaactaccacatgaaagctcacaaccgtctgt
acagctactcatatacattaaataagtaaaaaaaattttttttttttggt
ttttcgaaataaataaatcttaaaaaaaaaaaaaaaaaaagaaccaggca
gggtggcacaatactttaatcccagcactcggggaggcagaggcaggcag
atttctgagttcgaggccagcctggtctacaaagtgagttccaggacagc
cagggcttcgcagagaaaccatgtctcaaaaaaccaaaaaagaaaaaaaa
aaaaaaaagaaatgatttgtaattgtatcctgacttggctactttgtggg
ttttttttcttctctgccctcagagacagaaagggatagaagaagaaggg
aagcaggtgacattatcattagactacttcctgtactgaatggccactga
acgtccatggggcaagttgatctttaccattcaagattgctaattcttct
tgcacaatgacatactaaccaactgcaacctagcaagcatggtggaacac
cgctttaatcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_26376487_26377577
seq2: B6Ng01-223C23.b_46_1143 (reverse)

seq1  GTGTCTGAAGACAGCTA-CAGTGT-ACTTA-CAT-ATAAT-AATAATAAT  45
      |||| |||||||||||| | |||| ||||| ||| ||||| |||||||||
seq2  GTGTTTGAAGACAGCTACCGGTGTAACTTACCATAATAATAAATAATAAT  50

seq1  GATAAAGACTGGCC-TCAAACTCAGTTCCAGGATAACCAAGGTTACAAAA  94
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  GATAAAGACTGGCCTTCAAACTCAGTTCCAGGATTACCAAGGTTACAAAA  100

seq1  GCAGCAGACGAAGAACAAAGGATGTC-TTTTACACTGTGTGGCTGTGCCA  143
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  GCAGCAGACGAAGAACAAAGGATGTCTTTTTACACTGTGTGACTGTGCCA  150

seq1  CCTCCAGGACTGCTCCCTCTACTCTAACTGCATTCCAATAGGAGATGCTT  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGACTGCTCCCTCTACTCTAACTGCATTCCAATAGGAGATGCTT  200

seq1  GAGAGAGACACCCACAAAAACCAGCCAGGCAGCACCCGGTTTTCTAGCTG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACACCCACAAAAACCAGCCAGGCAGCACCCGGTTTTCTAGCTG  250

seq1  AGCCAAGCAGATAGGAGACAAAGATAGTTAGTGTTCAGTTGTTTACAGGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGCAGATAGGAGACAAAGATAGTTAGTGTTCAGTTGTTTACAGGG  300

seq1  AACCACCATTGACTCTCTTCACAAAGCACAATCTCAAAACAAGGGCAGAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCATTGACTCTCTTCACAAAGCACAATCTCAAAACAAGGGCAGAG  350

seq1  CCTCAGCCAGTTCTCCAAGGGAAACAAATTTTAAGGTCATGGTTCCCTGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCAGTTCTCCAAGGGAAACAAATTTTAAGGTCATGGTTCCCTGA  400

seq1  CTGAAACACAAAATTTCCCAGCACACACAGACCTGATGCTTGGATGAAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACACAAAATTTCCCAGCACACACAGACCTGATGCTTGGATGAAAA  450

seq1  ACAGCCTCAGGTAGGTCTTACTGATTAGCCCAAGGAATAAACTTTTCCCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTCAGGTAGGTCTTACTGATTAGCCCAAGGAATAAACTTTTCCCT  500

seq1  GAAGTCTAGATTAGACTTATTTCCTGCAATTCCCCCATCAATCGGTATTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTAGATTAGACTTATTTCCTGCAATTCCCCCATCAATCGGTATTA  550

seq1  TTCCTTTTCATTCCTGTATTTAGTAGGGAAACTATTAAGATAAATTATAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTCATTCCTGTATTTAGTAGGGAAACTATTAAGATAAATTATAA  600

seq1  CTAATTTTGCATTCATTTGCTTAAAGCATTGGCTCAATTTACTTATCTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTGCATTCATTTGCTTAAAGCATTGGCTCAATTTACTTATCTTT  650

seq1  TGCCTCTGCCTCCCGAGCTCTGGAATTAAAGGCGTGTGCCACCACGCCCG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCCGAGCTCTGGAATTAAAGGCGTGTGCCACCACGCCCG  700

seq1  GCCATGCTTATCTTCTTTTGTTGTTTCCTGGTTTTTGTTTTTTTTTTCCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCTTATCTTCTTTTGTTGTTTCCTGGTTTTTGTTTTTTTTTTCCA  750

seq1  CAGGGTCTCATAACCCAGGCTAGCCTTCAGTTTGCTATGTAGCTGAGACT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTCATAACCCAGGCTAGCCTTCAGTTTGCTATGTAGCTGAGACT  800

seq1  GACCTCAAACTCATATCTCTACCTCCGCAAAGATAAGATTATAGGCTGGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAAACTCATATCTCTACCTCCGCAAAGATAAGATTATAGGCTGGA  850

seq1  GCCTCCAAGCCTGACTGCTTTATCATTTTTTAAAAAGACTTTTATAATGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAAGCCTGACTGCTTTATCATTTTTTAAAAAGACTTTTATAATGT  900

seq1  ACATATCTATACATTCACAAAAGCAGAGAACACCAGCTCTGTGAACTAAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCTATACATTCACAAAAGCAGAGAACACCAGCTCTGTGAACTAAC  950

seq1  TACCAAGACTAAAGTCAACAGATAACCAGTGAGGAGCTAGCACACTTCTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGACTAAAGTCAACAGATAACCAGTGAGGAGCTAGCACACTTCTC  1000

seq1  CCACATGCCCAACCTCTGAACATTCTACTGTACACTGCACTCCAGAGATG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGCCCAACCTCTGAACATTCTACTGTACACTGCACTCCAGAGATG  1050

seq1  AGTCACACCAACTGTCAGCATCAATTTTCTGGTTATTAGGTAGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACACCAACTGTCAGCATCAATTTTCTGGTTATTAGGTAGAATTC  1098

seq1: chr17_26240216_26241327
seq2: B6Ng01-223C23.g_129_1227

seq1  CTTTTGTTAACTATTTAACAAAACATGACCAACAACAGCCACCAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTAACTATTTAACAAAACATGACCAACAACAGCCACCAAAAAAA  50

seq1  CAACAAAAAACAACAACAACCCACCTGAACTACCAACAACAACCAACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAAAACAACAACAACCCACCTGAACTACCAACAACAACCAACCAA  100

seq1  CAACCCCTCTTCCCCAGAGCCCTAGCATTTATATAGTCTCTGAAGAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCTCTTCCCCAGAGCCCTAGCATTTATATAGTCTCTGAAGAATCC  150

seq1  CCAGAATTCCAAACGTTGCACAATCACAGAAAATTATCTGCAGCTGGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATTCCAAACGTTGCACAATCACAGAAAATTATCTGCAGCTGGCAA  200

seq1  AATTGTGCTCTGCTAAATAAAGTGTGAGGCAAATCAAATTAGCCTCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGCTCTGCTAAATAAAGTGTGAGGCAAATCAAATTAGCCTCTGTG  250

seq1  GACAATCTGAAGCAGGCCAATATCCCCCACCTGGGAAATGAAAACATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATCTGAAGCAGGCCAATATCCCCCACCTGGGAAATGAAAACATACT  300

seq1  TCTATAATATTTGTCATTTTTTAAAAAAAGGAACCAGGGCTGGAGAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAATATTTGTCATTTTTTAAAAAAAGGAACCAGGGCTGGAGAGATG  350

seq1  GCTCAGTGGTTAAGAGCACCAACTGCTCTGCTCTTCTGAAGGACCTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGGTTAAGAGCACCAACTGCTCTGCTCTTCTGAAGGACCTGAGT  400

seq1  TCAAATCCCAGCAACCACATGGTGGCTCACATCTACCTGTAATGGGATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCCCAGCAACCACATGGTGGCTCACATCTACCTGTAATGGGATCT  450

seq1  GATGCCCTCTTCTGGTGTACTTATGTACAAAAGTAAATAAATCTTTGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCTCTTCTGGTGTACTTATGTACAAAAGTAAATAAATCTTTGGGC  500

seq1  CGAAGTGAGCAGGGACCATCAGAGCGAGCAGAGCAGAGGTCCTAAATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTGAGCAGGGACCATCAGAGCGAGCAGAGCAGAGGTCCTAAATTCA  550

seq1  ATTCCCAACTACCACATGAAAGCTCACAACCGTCTGTACAGCTACTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAACTACCACATGAAAGCTCACAACCGTCTGTACAGCTACTCATA  600

seq1  TACATTAAATAAGTAAAAAAAA-TTTTTTTTTTTGGTTTTTCGAAATAAA  649
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TACATTAAATAAGTAAAAAAAATTTTTTTTTTTTGGTTTTTCGAAATAAA  650

seq1  TAAATCTTAAAAAAAAAAAAAAAAAAAAAGAACCAGGCAGGGTGGCACAA  699
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTT--AAAAAAAAAAAAAAAAAAAGAACCAGGCAGGGTGGCACAA  698

seq1  TACTTTAATCCCAGCACTC-GGGAGGCAGAGGCAGGCAGATTTCTGAGTT  748
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TACTTTAATCCCAGCACTCGGGGAGGCAGAGGCAGGCAGATTTCTGAGTT  748

seq1  CGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTTCGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTTCGC  798

seq1  AGAGAAACCATGTCTCAAAAAACCAAAAAAAGAAAAAAAAAAAAAAAAAA  848
      |||||||||||||||||||||||||       ||||| ||||||||||||
seq2  AGAGAAACCATGTCTCAAAAAACCA-------AAAAAGAAAAAAAAAAAA  841

seq1  AAAAGAAATGATTTGTAAATTTGTATCCTGACTTTGGCTACTTTGTGGG-  897
      ||||||||||||||||||  |||||||||||| |||||||||||||||| 
seq2  AAAAGAAATGATTTGTAA--TTGTATCCTGAC-TTGGCTACTTTGTGGGT  888

seq1  TTTTTTTCTTCTCTGCCCCTCAGAGACAAGAAAGGGATAGAAG-AGAAAG  946
      ||||||||||||||| ||||||||||| ||||||||||||||| |||| |
seq2  TTTTTTTCTTCTCTG-CCCTCAGAGAC-AGAAAGGGATAGAAGAAGAAGG  936

seq1  GAAGCAGGTGACATTATCATTAGACTACTTCCTGTTACTG-ATGGGCACT  995
      |||||||||||||||||||||||||||||||||| ||||| |||| ||||
seq2  GAAGCAGGTGACATTATCATTAGACTACTTCCTG-TACTGAATGGCCACT  985

seq1  G-ACGTCCATGGGGCAAGTTTGATCTTCACCA-TCAAGATACCTAATTTC  1043
      | |||||||||||||||| |||||||| |||| |||||||  |||| |||
seq2  GAACGTCCATGGGGCAAG-TTGATCTTTACCATTCAAGATTGCTAA-TTC  1033

seq1  TTCTTTGCAC-ATGAC-TACTTAACAAACTGCAACCATAGCCAAGCAGTG  1091
      ||| |||||| ||||| ||| |||| |||||||||| ||| |||||| ||
seq2  TTC-TTGCACAATGACATAC-TAACCAACTGCAACC-TAG-CAAGCA-TG  1078

seq1  GTGGAGCACGCCTTTAATCCT  1112
      ||||| |||  ||||||||||
seq2  GTGGAACACCGCTTTAATCCT  1099