BAC Information

Click to search

BAC

Clone NameB6Ng01-224G04
Chromosome17 (Build37)
Map Location 16,390,393 - 16,538,855
singlet/doubletdoublet
Overlap geneLOC100041383
Upstream geneLOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224G04.bB6Ng01-224G04.g
ACCGA038860GA038861
length1,1441,139
definitionB6Ng01-224G04.b B6Ng01-224G04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,537,717 - 16,538,855)(16,390,393 - 16,391,521)
sequence
gaattcaccaaaatctacttttttttttttttttttggaaacagagtttc
tctgtgtagccctggctgtcctggaactcactctgtagaccaggctggcc
tcaaactcagaaatctgcctgcctctgcctcccaagtgctgggattaaag
gtttgtgccaccactgcctggagaaatctaccttttttactggaagagtt
cacactcaaatacagggaatctgctccacaggattctggaccataaatta
tcctactacataaagcaaaggtttttggtcttgtttgtttgtatgtatgt
tttaaaaaaacagttctagaagggctgttcctgatatttcacagaagtaa
acattgatataattttaaagttgcagctgtttctagactcaaattgtaaa
cacaagttcacatcactctcattgattcataatcttccacgattccttct
aagccaggaaattttgctggaatgtgaaacaggaacaagaagaatttaaa
agcatttatgtatcttcaaaggtgttgtaaaatcctaaaactacaagtta
atttttatcatgagctatcagaataaaggttttaaattttgtgtggcaat
attgtagtcaaaaatcataaaagttataaaaccaaccttgcaatcgataa
ggacagagtagcaatagtactatttattggattattatgtactacacagt
agtacaagaagtttatttgtaatgtattttgttaaaaatttgggattgga
gatactgaagttaaatgaaattcccttaagtgtggtaggacttaagtgga
tgtggttcatctaaggttttcattgtaaactaaatgtagaccaagtacaa
tgagtacaaatcaaatgcttgattgaaatcatggagtgggaaaaccttaa
ctgcataaaactaaattgtaatagcacagaagctatgaaagggtctcctt
tcaaattctaattcttttcaacagccaaacataccttggtagtttctata
tcatttcataatatcctgtatattttagaattatggagggctcatccttt
ttacaaaaagtacaaagtaaggaacataaattgttaaagtagtatacggg
caataatatacaacatttgccgaattgtcacaacccaatatcta
gaattcacttataactgccacagtaaatatcaccctaccaaaagtaaact
ttattctaatttttatactcttaattaaacctgttcctgaaatccatata
gatttttatcatctatactgattcagcttgtgtttatttatttaagatgc
tttatgtaatagtagcttggtttttaaaaaaatactgtgtagtattctgt
tgtgaacatatcacaattcccttttttccattgtacctcttcaagatacg
ccatgttggttgccctcatattttggatgtcaccaataaggcctctgtga
acacattgtaaatgtcttctgttgcaccatgaccccaccccattcttcat
tcatagatatatgaatgaagtggcattattgagtcacaggacatgggaca
aatgacactagtaagtcatgcaaagcagtttttcagtgactgaaccactt
taatttccatattagccccttcacaacattgtgtgatttgactattgagt
tgcatgtagctctaggatttatgttttcagtgggtatgttgtgtattaat
atttattcgtgtcaatccattctaatactgaaatgcatgtaggttttgag
ccaggattgtagcacacggccgtctttcccttcttgtttctgttttcatt
ttcctgaagatatgtaatgttaaatatctcctcatactcattttaaataa
ttaattaattaataatagttaaacaattcagtgttattgctgaattgtgt
ctctccctccagtttatatactgaattctgccacacacctcagaatgtgg
taaaaggatggttgtagatgaagttgttagggtaaagtcatactaaaata
atgtatttttatataaaaaatgtctttacaaaaaccaccaaggtttctga
ttcctgtccttctgtagctttaagacaatgtttcctttcttctaaatcac
ccatcttacaatgcttgtcttaatagtcacctataaattcttagcacaac
aataataattgaatggcctctgctcttacctacccctgtcctagggctca
ctaactttgtgaatgcatggcaggtctcaaggggctaaagttcacttgtt
acagtctcagggttgcctcacttcctcgaaaatatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_16537717_16538855
seq2: B6Ng01-224G04.b_45_1188 (reverse)

seq1  TAGATATT-GGTTGTGACAA-TCTGCAAAAATGTTGTATA-TATTG-CAG  46
      |||||||| ||||||||||| || ||  |||||||||||| ||||| | |
seq2  TAGATATTGGGTTGTGACAATTCGGC--AAATGTTGTATATTATTGCCCG  48

seq1  TATACTACTTTAAACAATTTATGTTCCTTACTTTGTAC-TTTTGTAAAAG  95
      ||||||||||| |||||||||||||||||||||||||| |||||||||| 
seq2  TATACTACTTT-AACAATTTATGTTCCTTACTTTGTACTTTTTGTAAAAA  97

seq1  GAATGAGCCCTCATAAATTCTTAAATATACAGAATA-TATGAAATGATAT  144
      | ||||||||||   |||||| |||||||||| ||| |||||||||||||
seq2  GGATGAGCCCTCCATAATTCTAAAATATACAGGATATTATGAAATGATAT  147

seq1  AGAAACTAACAAGGTATGTTT-GCTGTTG-AAAGAATTAGAATTTGAAAG  192
      |||||||| |||||||||||| ||||||| ||||||||||||||||||||
seq2  AGAAACTACCAAGGTATGTTTGGCTGTTGAAAAGAATTAGAATTTGAAAG  197

seq1  GAGACCCTTTCATAGCTTCTGTGCTATTTACATTTTAGTTTTATGCAGTT  242
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  GAGACCCTTTCATAGCTTCTGTGCTA-TTACAATTTAGTTTTATGCAGTT  246

seq1  -AGGTTTTTCCACTCCATGATTTCAATCAAGCATTTGATTTGTACTCATT  291
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTCCCACTCCATGATTTCAATCAAGCATTTGATTTGTACTCATT  296

seq1  GTACTTGGTCTACATTTAGTTTACAATGAAAACCTTAGATGAACCACATC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGGTCTACATTTAGTTTACAATGAAAACCTTAGATGAACCACATC  346

seq1  CACTTAAGTCCTACCACACTTAAGGGAATTTCATTTAACTTCAGTATCTC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAGTCCTACCACACTTAAGGGAATTTCATTTAACTTCAGTATCTC  396

seq1  CAATCCCAAATTTTTAACAAAATACATTACAAATAAACTTCTTGTACTAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCAAATTTTTAACAAAATACATTACAAATAAACTTCTTGTACTAC  446

seq1  TGTGTAGTACATAATAATCCAATAAATAGTACTATTGCTACTCTGTCCTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGTACATAATAATCCAATAAATAGTACTATTGCTACTCTGTCCTT  496

seq1  ATCGATTGCAAGGTTGGTTTTATAACTTTTATGATTTTTGACTACAATAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATTGCAAGGTTGGTTTTATAACTTTTATGATTTTTGACTACAATAT  546

seq1  TGCCACACAAAATTTAAAACCTTTATTCTGATAGCTCATGATAAAAATTA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACACAAAATTTAAAACCTTTATTCTGATAGCTCATGATAAAAATTA  596

seq1  ACTTGTAGTTTTAGGATTTTACAACACCTTTGAAGATACATAAATGCTTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTAGTTTTAGGATTTTACAACACCTTTGAAGATACATAAATGCTTT  646

seq1  TAAATTCTTCTTGTTCCTGTTTCACATTCCAGCAAAATTTCCTGGCTTAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTTCTTGTTCCTGTTTCACATTCCAGCAAAATTTCCTGGCTTAG  696

seq1  AAGGAATCGTGGAAGATTATGAATCAATGAGAGTGATGTGAACTTGTGTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATCGTGGAAGATTATGAATCAATGAGAGTGATGTGAACTTGTGTT  746

seq1  TACAATTTGAGTCTAGAAACAGCTGCAACTTTAAAATTATATCAATGTTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTTGAGTCTAGAAACAGCTGCAACTTTAAAATTATATCAATGTTT  796

seq1  ACTTCTGTGAAATATCAGGAACAGCCCTTCTAGAACTGTTTTTTTAAAAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTGAAATATCAGGAACAGCCCTTCTAGAACTGTTTTTTTAAAAC  846

seq1  ATACATACAAACAAACAAGACCAAAAACCTTTGCTTTATGTAGTAGGATA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACAAACAAACAAGACCAAAAACCTTTGCTTTATGTAGTAGGATA  896

seq1  ATTTATGGTCCAGAATCCTGTGGAGCAGATTCCCTGTATTTGAGTGTGAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGGTCCAGAATCCTGTGGAGCAGATTCCCTGTATTTGAGTGTGAA  946

seq1  CTCTTCCAGTAAAAAAGGTAGATTTCTCCAGGCAGTGGTGGCACAAACCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGTAAAAAAGGTAGATTTCTCCAGGCAGTGGTGGCACAAACCT  996

seq1  TTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGG  1046

seq1  CCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGA  1096

seq1  AACTCTGTTTCCAAAAAAAAAAAAAAAAAAGTAGATTTTGGTGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGTTTCCAAAAAAAAAAAAAAAAAAGTAGATTTTGGTGAATTC  1144

seq1: chr17_16390393_16391521
seq2: B6Ng01-224G04.g_67_1205

seq1  GAATTCACTTATAACTGCCACAGTAAATATCACCCTACCAAAAGTAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTATAACTGCCACAGTAAATATCACCCTACCAAAAGTAAACT  50

seq1  TTATTCTAATTTTTATACTCTTAATTAAACCTGTTCCTGAAATCCATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTAATTTTTATACTCTTAATTAAACCTGTTCCTGAAATCCATATA  100

seq1  GATTTTTATCATCTATACTGATTCAGCTTGTGTTTATTTATTTAAGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTATCATCTATACTGATTCAGCTTGTGTTTATTTATTTAAGATGC  150

seq1  TTTATGTAATAGTAGCTTGGTTTTTAAAAAAATACTGTGTAGTATTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTAATAGTAGCTTGGTTTTTAAAAAAATACTGTGTAGTATTCTGT  200

seq1  TGTGAACATATCACAATTCCCTTTTTTCCATTGTACCTCTTCAAGATACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACATATCACAATTCCCTTTTTTCCATTGTACCTCTTCAAGATACG  250

seq1  CCATGTTGGTTGCCCTCATATTTTGGATGTCACCAATAAGGCCTCTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTGGTTGCCCTCATATTTTGGATGTCACCAATAAGGCCTCTGTGA  300

seq1  ACACATTGTAAATGTCTTCTGTTGCACCATGACCCCACCCCATTCTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTGTAAATGTCTTCTGTTGCACCATGACCCCACCCCATTCTTCAT  350

seq1  TCATAGATATATGAATGAAGTGGCATTATTGAGTCACAGGACATGGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGATATATGAATGAAGTGGCATTATTGAGTCACAGGACATGGGACA  400

seq1  AATGACACTAGTAAGTCATGCAAAGCAGTTTTTCAGTGACTGAACCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACACTAGTAAGTCATGCAAAGCAGTTTTTCAGTGACTGAACCACTT  450

seq1  TAATTTCCATATTAGCCCCTTCACAACATTGTGTGATTTGACTATTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCCATATTAGCCCCTTCACAACATTGTGTGATTTGACTATTGAGT  500

seq1  TGCATGTAGCTCTAGGATTTATGTTTTCAGTGGGTATGTTGTGTATTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTAGCTCTAGGATTTATGTTTTCAGTGGGTATGTTGTGTATTAAT  550

seq1  ATTTATTCGTGTCAATCCATTCTAATACTGAAATGCATGTAGGTTTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCGTGTCAATCCATTCTAATACTGAAATGCATGTAGGTTTTGAG  600

seq1  CCAGGATTGTAGCACACGGCCGTCTTTCCCTTCTTGTTTCTGTTTTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATTGTAGCACACGGCCGTCTTTCCCTTCTTGTTTCTGTTTTCATT  650

seq1  TTCCTGAAGATATGTAATGTTAAATATCTCCTCATACTCATTTTAAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAAGATATGTAATGTTAAATATCTCCTCATACTCATTTTAAATAA  700

seq1  TTAATTAATTAATAATAGTTAAACAATTCAGTGTTATTGCTGAATTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAATTAATAATAGTTAAACAATTCAGTGTTATTGCTGAATTGTGT  750

seq1  CTCTCCCTCCAGTTTATATACTGAATTCTGCCACACACCTCAGAATGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTCCAGTTTATATACTGAATTCTGCCACACACCTCAGAATGTGG  800

seq1  TAAAAGGATGGTTGTAGATGAAGTTGTTAGGGTAAAGTCATACTAAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGATGGTTGTAGATGAAGTTGTTAGGGTAAAGTCATACTAAAATA  850

seq1  ATGTATTTTTATATAAAAAATTGTCTTTACAAAAACCACCAAGGTTTCTG  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGTATTTTTATATAAAAAA-TGTCTTTACAAAAACCACCAAGGTTTCTG  899

seq1  ATTCCTGTCCTTCTGTAGCTTTAAGACAATGTTTCCTTTCTTCTAAATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGTCCTTCTGTAGCTTTAAGACAATGTTTCCTTTCTTCTAAATCA  949

seq1  CCCATCTTACAATGC-TGTCTT-ATAGTCA-CTATTAATTCTTAGCACAA  997
      ||||||||||||||| |||||| ||||||| |||| ||||||||||||||
seq2  CCCATCTTACAATGCTTGTCTTAATAGTCACCTATAAATTCTTAGCACAA  999

seq1  CA--TATAATTG-ATGG-CTCTGCTCTTA-CTA-CCCTGT-CTA-TGCTC  1039
      ||   ||||||| |||| ||||||||||| ||| |||||| |||  ||||
seq2  CAATAATAATTGAATGGCCTCTGCTCTTACCTACCCCTGTCCTAGGGCTC  1049

seq1  ACTAACTTTGTTGATGCATTGGCA-GTCTTCAGGGGGTAAAAGTCACTTG  1088
      |||||||||||  ||||| ||||| ||||  ||||| ||||  |||||||
seq2  ACTAACTTTGTGAATGCA-TGGCAGGTCTCAAGGGGCTAAAGTTCACTTG  1098

seq1  TTACAGTCTCAATGGTTGCCTTCATTCCTC-AGAATATATTT  1129
      |||||||||| | ||||||||   |||||| | |||||||||
seq2  TTACAGTCTC-AGGGTTGCCTCACTTCCTCGAAAATATATTT  1139