BAC Information

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BAC

Clone NameB6Ng01-225M04
Chromosome17 (Build37)
Map Location 72,796,731 - 72,978,120
singlet/doubletdoublet
Overlap geneAlk
Upstream geneLOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4
Downstream geneYpel5, Lbh, Lycat, LOC668709, Capn13, LOC100043666, Galnt14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225M04.bB6Ng01-225M04.g
ACCGA039873GA039874
length1,1961,158
definitionB6Ng01-225M04.b B6Ng01-225M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,976,901 - 72,978,120)(72,796,731 - 72,797,880)
sequence
gaattcaaggtcagcttcttcaccatattgtgttcaaggtatgggcactg
tataaaaaaaaaaaaaaaaaaaaaaaaagaaagaaatggaaaaattagcg
ccgggggattgcacaggggctttgcgagtgactatctcattactgcactg
tgtataacacaaaggaaacaggttgctttctcttgtgtagcaagtgcatt
tatttaattacatgacctttggctatgttagaacttaatttggaaatatt
taagagtgtgaaacttttccagattctttaaattgaaagcttgctcaatt
ctccagactccatgacccctaggctcactgtttttctgtctcagttggac
tctgccctgcctctccaaagctcattccctgggtcagccgaggcagagtt
gatgctctctggtcctctacaatggccgcatttgctcttggtttctcttt
gaaaggtgtgacctttgagatgctgggtttgcttagtctccaatgtgtgc
cgctgtgactgctgccacccctgtgcaggatgaagtcataggcagcagag
aggagtccaagtcttgggtctcttatctttccacgtttatttcctttcct
cccccaaggtcggtcaagggcttggacaagaatagagatgatcttagggc
tctttcttcagttttctacacttacggactttatgaactcattcttttaa
tcttccctgccatgtctgccttgtctccgctcagtaccgtgtgcccttct
gaggagttcgcttcctatttcatcttctaggtcattcagaaaggttgtta
atcattcagaaggttgggagctttctctacctggagaatgctttttcctg
aactcattgaaagtctctttgattttcccaagaactgaaaaataatatct
agagtaagtggggaaaatattctgtgtgagtaccatatttatagctctgg
gtgttatgtcaaaatccccacattgtaggaggcttcactgggctgctttc
ccgtattgacagagaggaggctgcctggatagtgcttcacgttgctgagg
aaaaaaaatccaccctctgtctcttagagatgcttgagtttcagtgcaga
actcagtaggtgtcaggtatttctcctctgttatgtgtatggggtgagac
ctcaatatcggtctcaggtgattcagctggatgttatttgactagg
gaattctgacatcacatttaatatcttcgataagtttcctcagagacaat
tggaccgatgaccaaagagggtcccatgtattcacatatttcattcagac
agacttatatattacaaaatgaggtattattaagttagaaattccctgtt
tttctgataaatacaggggaggcacccatccactgagaaggatggaaatc
catgacaacagaaatgtcttaatgcattaagcactatctgcattttgggt
taaattttctcaggaaattctgctcctttcaaaaagcatcatggaaagag
gactccaatgagagagaatgatttagaatcctgggggagcacggggatag
aaggggacctctgatgaggtcttctgagtgaggactacttgcaagcagtc
ttagaactgagctgataccagctctataagaaaccggagggtgggactgg
ggaggtagagctgtggggaaagtgcttgaggcacaagcatgaggtcttga
actcagaccccccccagcacccacgtgaaagcctggtgaggtgccacgtg
cccatctctatccttagccctgagagtgaggagacactaagtctagaggc
agagtagttagccagccaacctagccaactcagtgagacactctggtgag
gagctacagatgaaaacacccaacattagcctctggtacctatatttttg
taggcaagcacaccctgcatgtggacacacacacacacacacacacatac
ccttgagaatgtaactttcatgggctaatatacaactaagagctatttca
atttgagaataatatgtctgaaaggtcaaataagacacctgccagtgctt
cagagccactggcagctaggagcagtgatgggacgaacagtgcagctctt
cacactgccaactgtcgactgaaatagcagtaagatttacacggtactat
ctttggtgctattacaacaggatggcttcattaatgctcattacatgtac
aaatgactgttcagctccctccctgccccctgtttgcttcgaagctcctg
actgacacatttctgactgacagaatgtttcagttcctgagcagcttcat
gtactctctccccagacctatctgctggagggaataaacaagaattcaac
cctaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_72976901_72978120
seq2: B6Ng01-225M04.b_48_1243 (reverse)

seq1  CCTAGTCAAATACAATCCCAGCTGAAATCCACCCTGGGAAGACTCTGATT  50
      ||||||||||||  || ||||||| ||||   |||| ||     | ||| 
seq2  CCTAGTCAAATAACAT-CCAGCTG-AATC--ACCTGAGA-----CCGAT-  40

seq1  TTAAATGAGGTTCTCACCCCAT-CACATTAACAGA-GAGAAATACTTGAC  98
         | ||||| ||||||||||| |||| ||||||| ||||||||| ||||
seq2  ---ATTGAGG-TCTCACCCCATACACA-TAACAGAGGAGAAATACCTGAC  85

seq1  ACTAACCTGAATGTCTGCAACTGAAAACTCCAAGGCATTCTCTTAAGAGA  148
      ||  | |||| | ||||| |||| ||||||  | ||| |||| |||||||
seq2  ACCTA-CTGAGT-TCTGC-ACTG-AAACTC--AAGCA-TCTC-TAAGAGA  127

seq1  CAGAGGGTGATTTTTTTTTTCCTCAGCAACGTTGAAAGCACTATCCAGGC  198
      |||||||||   ||||||||||||||||||||   |||||||||||||||
seq2  CAGAGGGTG-GATTTTTTTTCCTCAGCAACGT--GAAGCACTATCCAGGC  174

seq1  AGCCTCCCTCTCTGTCAATACGGG-AAGCAG-CCAGTGAGCCTTCCTACA  246
      ||||| |||||||||||||||||| |||||| |||||||  | |||||||
seq2  AGCCT-CCTCTCTGTCAATACGGGAAAGCAGCCCAGTGAAGCCTCCTACA  223

seq1  ATGTGGGGATTTTGACATAACACCCAGAGCTTATAAATATGTTACTCACA  296
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  ATGTGGGGATTTTGACATAACACCCAGAGC-TATAAATATGGTACTCACA  272

seq1  CAGAATATTTTCCCCACTTACTCTAGATATTATTTTTTCAGTTCTTGGGA  346
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGAATATTTTCCCCACTTACTCTAGATATTA-TTTTTCAGTTCTTGGGA  321

seq1  AAATCAAAGAGACTTTCAATGAGTTCAGGAAAAAGCATTCTCCAGGTAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAGAGACTTTCAATGAGTTCAGGAAAAAGCATTCTCCAGGTAGA  371

seq1  GAAAGCTCCCAACCTTCTGAATGATTAACAACC-TTCTGAATGACCTAGA  445
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAAAGCTCCCAACCTTCTGAATGATTAACAACCTTTCTGAATGACCTAGA  421

seq1  AGATGAAATAGGAAGCGAACTCCTCAGAAGGGCACACGGTACTGAGCGGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAATAGGAAGCGAACTCCTCAGAAGGGCACACGGTACTGAGCGGA  471

seq1  GACAAGGCAGACATGGCAGGGAAGATTAAAAGAATGAGTTCATAAAGTCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGCAGACATGGCAGGGAAGATTAAAAGAATGAGTTCATAAAGTCC  521

seq1  GTAAGTGTAGAAAACTGAAGAAAGAGCCCTAAGATCATCTCTATTCTTGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGTAGAAAACTGAAGAAAGAGCCCTAAGATCATCTCTATTCTTGT  571

seq1  CCAAGCCCTTGACCGACCTTGGGGGAGGAAAGGAAATAAACGTGGAAAGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCCTTGACCGACCTTGGGGGAGGAAAGGAAATAAACGTGGAAAGA  621

seq1  TAAGAGACCCAAGACTTGGACTCCTCTCTGCTGCCTATGACTTCATCCTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGACCCAAGACTTGGACTCCTCTCTGCTGCCTATGACTTCATCCTG  671

seq1  CACAGGGGTGGCAGCAGTCACAGCGGCACACATTGGAGACTAAGCAAACC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGGTGGCAGCAGTCACAGCGGCACACATTGGAGACTAAGCAAACC  721

seq1  CAGCATCTCAAAGGTCACACCTTTCAAAGAGAAACCAAGAGCAAATGCGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTCAAAGGTCACACCTTTCAAAGAGAAACCAAGAGCAAATGCGG  771

seq1  CCATTGTAGAGGACCAGAGAGCATCAACTCTGCCTCGGCTGACCCAGGGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTAGAGGACCAGAGAGCATCAACTCTGCCTCGGCTGACCCAGGGA  821

seq1  ATGAGCTTTGGAGAGGCAGGGCAGAGTCCAACTGAGACAGAAAAACAGTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTTTGGAGAGGCAGGGCAGAGTCCAACTGAGACAGAAAAACAGTG  871

seq1  AGCCTAGGGGTCATGGAGTCTGGAGAATTGAGCAAGCTTTCAATTTAAAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGGGGTCATGGAGTCTGGAGAATTGAGCAAGCTTTCAATTTAAAG  921

seq1  AATCTGGAAAAGTTTCACACTCTTAAATATTTCCAAATTAAGTTCTAACA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGAAAAGTTTCACACTCTTAAATATTTCCAAATTAAGTTCTAACA  971

seq1  TAGCCAAAGGTCATGTAATTAAATAAATGCACTTGCTACACAAGAGAAAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAAAGGTCATGTAATTAAATAAATGCACTTGCTACACAAGAGAAAG  1021

seq1  CAACCTGTTTCCTTTGTGTTATACACAGTGCAGTAATGAGATAGTCACTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGTTTCCTTTGTGTTATACACAGTGCAGTAATGAGATAGTCACTC  1071

seq1  GCAAAGCCCCTGTGCAATCCCCCGGCGCTAATTTTTCCATTTCTTTCTTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCCCCTGTGCAATCCCCCGGCGCTAATTTTTCCATTTCTTTCTTT  1121

seq1  TTTTTTTTTTTTTTTTTTTTTTATACAGTGCCCATACCTTGAACACAATA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTATACAGTGCCCATACCTTGAACACAATA  1171

seq1  TGGTGAAGAAGCTGACCTTGAATTC  1220
      |||||||||||||||||||||||||
seq2  TGGTGAAGAAGCTGACCTTGAATTC  1196

seq1: chr17_72796731_72797880
seq2: B6Ng01-225M04.g_66_1223

seq1  GAATTCTGACATCACATTTAATATCTTCGATAAGTTTCCTCAGAGACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACATCACATTTAATATCTTCGATAAGTTTCCTCAGAGACAAT  50

seq1  TGGACCGATGACCAAAGAGGGTCCCATGTATTCACATATTTCATTCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCGATGACCAAAGAGGGTCCCATGTATTCACATATTTCATTCAGAC  100

seq1  AGACTTATATATTACAAAATGAGGTATTATTAAGTTAGAAATTCCCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTATATATTACAAAATGAGGTATTATTAAGTTAGAAATTCCCTGTT  150

seq1  TTTCTGATAAATACAGGGGAGGCACCCATCCACTGAGAAGGATGGAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATAAATACAGGGGAGGCACCCATCCACTGAGAAGGATGGAAATC  200

seq1  CATGACAACAGAAATGTCTTAATGCATTAAGCACTATCTGCATTTTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAACAGAAATGTCTTAATGCATTAAGCACTATCTGCATTTTGGGT  250

seq1  TAAATTTTCTCAGGAAATTCTGCTCCTTTCAAAAAGCATCATGGAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTCTCAGGAAATTCTGCTCCTTTCAAAAAGCATCATGGAAAGAG  300

seq1  GACTCCAATGAGAGAGAATGATTTAGAATCCTGGGGGAGCACGGGGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAATGAGAGAGAATGATTTAGAATCCTGGGGGAGCACGGGGATAG  350

seq1  AAGGGGACCTCTGATGAGGTCTTCTGAGTGAGGACTACTTGCAAGCAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGACCTCTGATGAGGTCTTCTGAGTGAGGACTACTTGCAAGCAGTC  400

seq1  TTAGAACTGAGCTGATACCAGCTCTATAAGAAACCGGAGGGTGGGACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTGAGCTGATACCAGCTCTATAAGAAACCGGAGGGTGGGACTGG  450

seq1  GGAGGTAGAGCTGTGGGGAAAGTGCTTGAGGCACAAGCATGAGGTCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAGAGCTGTGGGGAAAGTGCTTGAGGCACAAGCATGAGGTCTTGA  500

seq1  ACTCAGACCCCCCCCAGCACCCACGTGAAAGCCTGGTGAGGTGCCACGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGACCCCCCCCAGCACCCACGTGAAAGCCTGGTGAGGTGCCACGTG  550

seq1  CCCATCTCTATCCTTAGCCCTGAGAGTGAGGAGACACTAAGTCTAGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTCTATCCTTAGCCCTGAGAGTGAGGAGACACTAAGTCTAGAGGC  600

seq1  AGAGTAGTTAGCCAGCCAACCTAGCCAACTCAGTGAGACACTCTGGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGTTAGCCAGCCAACCTAGCCAACTCAGTGAGACACTCTGGTGAG  650

seq1  GAGCTACAGATGAAAACACCCAACATTAGCCTCTGGTACCTATATTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACAGATGAAAACACCCAACATTAGCCTCTGGTACCTATATTTTTG  700

seq1  TAGGCAAGCACA-CCTGCATGTGGACACACACACACACACACACACATA-  748
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  TAGGCAAGCACACCCTGCATGTGGACACACACACACACACACACACATAC  750

seq1  CCTTGAGAATGTAAC-TTCATGGGCTAATATACAACTAAGAGCTATTCCA  797
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  CCTTGAGAATGTAACTTTCATGGGCTAATATACAACTAAGAGCTATTTCA  800

seq1  A-TTGAGAATAATATGTCTGAAAGGTCAAAATAAGACACCTGCCAGTGC-  845
      | ||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  ATTTGAGAATAATATGTCTGAAAGGTC-AAATAAGACACCTGCCAGTGCT  849

seq1  TCAGAGCCACTGGCAGCTAGGAGCAGTGAT-GGACGAACAGTGCAGCTCT  894
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCAGAGCCACTGGCAGCTAGGAGCAGTGATGGGACGAACAGTGCAGCTCT  899

seq1  TCACACTGCCAACTGTCGACTGAAATAGCAGTAAGATTTACACGGTACTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTGCCAACTGTCGACTGAAATAGCAGTAAGATTTACACGGTACTA  949

seq1  TCTTTGGTGCTATTTACAAACAGGAT-GCTTCATTAATGCTCATTAAACA  993
      |||||||||||| |||| |||||||| ||||||||||||||||||  |||
seq2  TCTTTGGTGCTA-TTAC-AACAGGATGGCTTCATTAATGCTCATT--ACA  995

seq1  TGTACAAATGACTG-TCAGCTCACTCCCTGCCCCCCTGTTGCTTCGAAGC  1042
      |||||||||||||| ||||||| ||||||||||||   ||||||||||||
seq2  TGTACAAATGACTGTTCAGCTCCCTCCCTGCCCCCTGTTTGCTTCGAAGC  1045

seq1  TCCCTGACTGACACATTTCTGACTGACAGGAATGTTCAACT--CTGAGGC  1090
      | |||||||||||||||||||||||||| |||||||  | |  |||| ||
seq2  T-CCTGACTGACACATTTCTGACTGACA-GAATGTTTCAGTTCCTGA-GC  1092

seq1  AGCTTCATG-ACTC-CT-CCCAGACC-ATCTGCATG-GGGGATAAACAAG  1135
      ||||||||| |||| || |||||||| ||||||  | ||| |||||||||
seq2  AGCTTCATGTACTCTCTCCCCAGACCTATCTGCTGGAGGGAATAAACAAG  1142

seq1  AA-TCAACACTAGGCT  1150
      || ||||| |||||||
seq2  AATTCAACCCTAGGCT  1158