BAC Information

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BAC

Clone NameB6Ng01-225P15
Chromosome17 (Build37)Y (Build37)
Map Location 58,585,826 - 58,586,9151,494,352 - 1,494,385
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEmr1, EG224916, Cntnap5c, LOC674419
Downstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225P15.bB6Ng01-225P15.g
ACCGA040035GA040036
length1,089890
definitionB6Ng01-225P15.b B6Ng01-225P15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,585,826 - 58,586,915)(1,494,352 - 1,494,385)
sequence
gaattcctgaacctcaagtccagccaccctcactgatttgttgttttcca
ggtcaatgacataccctgtgtcagaatacgtggtagaaaacatttgataa
tattgtcctgtgctctccatgaacccatatacaatacacaaatctctccc
taacatacattaacatacatgcacacacacacacacacacacacacacac
acatatatatatatatatatatatatatataatttgaaaatacagaatta
gtgcacacatttataattgatagctgctatgccaataaagcaattataaa
aatacttaattttttctaagtttgtatacttactttgattcatatcatat
ttctgaagaattttccctttatgtttatttttgtctgtttatacatgtat
gtctaatgtaatcatagacatattttaaaatttttttagctttttattga
ttctttatgcagctcatctccccatgccctcataacccccctttgctctt
gcaacataccactcagaataaaacacacacacacacacacacacacacac
acacacacacacacacacaagcaagcaccaacagcaatgatggcagcagt
tctgtatccacactacctcacagcagaggaggacttccttctagggtgaa
gtttcattggatggagttttaggttctgtgaaatatctcattggtatgga
gaggcatttcaggaacacctcgtacttgttgagtgaattcctattggaaa
ggaggaagttgagtttgcaggtttgccaaggcctacatgaccttcctcag
gtagaggatatgggggccaggctccccagacaagttcagagaaaaggaag
tcctgctgatagagggagtcctccattttgtaccaagctgagcagaatta
tccagatatggtagactgctactttttttttaaaccagggtttctctata
tatgtcaaataaaactaattagttgacataaaactacttccaatggttta
ctttatgcactgtagaaattacaacaaaatgagatgtagttagctacaaa
cctagaaggtggaacatctccagtggaaatcttttgtgt

gaattccttctgtttctatttttgtgggatagtttgaagagtattggtat
tagatcttctttgaaggttgacagaactctacactaaacccatctggtcc
tggggattttttggttgggagattattgataactgtttctatatttttag
gttatgtaagactgtatagatggtttgtttgatcgtgatctaactttggt
acctgatattttgtctagaatatcctccatttcatccagattttccagtt
ttgttgagtatagacttttgtagttggatctgatgatttttttagttttc
ttccatctctgttgttatatctcacatttcacttctgtttttgttaattt
gggtattgcctcagtcctctctggttagtctggttaagagtttatctatc
ttgttgattttctccaagacccagctcctgttttgtttttgttttgtttt
gttttgtattgttttgttttgtttttgattctttgtattgttccttttgt
ttattgcttgatttcagccctgagtttgattatatttcctgccttctact
cctcttgggtgtatttgtgtctttttgttctagagctttcaggtatattg
ttaggctgctaatgtatgctatctccagttcccttttggagtcactcatg
gctatgagttttcctcttagcactacttttcattatgtccccataagttt
gggtatgttgtttcttcattttccttaaattctaaaaagtctttaatgtc
ctttatttcttccttgactgagttatcattgagtagagtgttgttcagct
tccatgtgtatgtgggctttctgttcttttggttgatattgaagaccagc
cttaatcagtagtgatctgataagaggcatgggattattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_58585826_58586915
seq2: B6Ng01-225P15.b_48_1136

seq1  GAATTCCTGAACCTCAAGTCCAGCCACCCTCACTGATTTGTTGTTTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAACCTCAAGTCCAGCCACCCTCACTGATTTGTTGTTTTCCA  50

seq1  GGTCAATGACATACCCTGTGTCAGAATACGTGGTAGAAAACATTTGATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAATGACATACCCTGTGTCAGAATACGTGGTAGAAAACATTTGATAA  100

seq1  TATTGTCCTGTGCTCTCCATGAACCCATATACAATACACAAATCTCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCCTGTGCTCTCCATGAACCCATATACAATACACAAATCTCTCCC  150

seq1  TAACATACATTAACATACATGCACACACACACACACACACACACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATACATTAACATACATGCACACACACACACACACACACACACACAC  200

seq1  ACATATATATATATATATATATATATATATATAATTTGAAAATACAGAAT  250
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AC--ATATATATATATATATATATATATATATAATTTGAAAATACAGAAT  248

seq1  TAGTGCACACATTTATAATTGATAGCTGCTATGCCAATAAAGCAATTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCACACATTTATAATTGATAGCTGCTATGCCAATAAAGCAATTATA  298

seq1  AAAATACTTAATTTTTTCTAAGTTTGTATACTTACTTTGATTCATATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTTAATTTTTTCTAAGTTTGTATACTTACTTTGATTCATATCAT  348

seq1  ATTTCTGAAGAATTTTCCCTTTATGTTTATTTTTGTCTGTTTATACATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAAGAATTTTCCCTTTATGTTTATTTTTGTCTGTTTATACATGT  398

seq1  ATGTCTAATGTAATCATAGACATATTTTAAAATTTTTTTAGCTTTTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAATGTAATCATAGACATATTTTAAAATTTTTTTAGCTTTTTATT  448

seq1  GATTCTTTATGCAGCTCATCTCCCCATGCCCTCATAACCCCCCTTTGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTATGCAGCTCATCTCCCCATGCCCTCATAACCCCCCTTTGCTC  498

seq1  TTGCAACATACCACTCAGAATAAAACACACACACACACACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACATACCACTCAGAATAAAACACACACACACACACACACACACAC  548

seq1  ACACACACACACACACACACAAGCAAGCACCAACAGCAATGATGGCAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACAAGCAAGCACCAACAGCAATGATGGCAGCA  598

seq1  GTTCTGTATCCACACTACCTCACAGCAGAGGAGGACTTCCTTCTAGGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTATCCACACTACCTCACAGCAGAGGAGGACTTCCTTCTAGGGTG  648

seq1  AAGTTTCATTGGATGGAGTTTTAGGTTCTGTGAAATATCTCATTGGTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCATTGGATGGAGTTTTAGGTTCTGTGAAATATCTCATTGGTATG  698

seq1  GAGAGGCATTTCAGGAACACCTCGTACTTGTTGAGTGAATTCCTATTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCATTTCAGGAACACCTCGTACTTGTTGAGTGAATTCCTATTGGA  748

seq1  AAGGAGGAAGTTGAGTTTGCAGGTTTGCCAAGGCCTACATGACCTTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGAAGTTGAGTTTGCAGGTTTGCCAAGGCCTACATGACCTTCCTC  798

seq1  AGGTAGAGGATATGGGGGCCAGGCTCCCCAGACAAGTTCAGAGAAAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAGGATATGGGGGCCAGGCTCCCCAGACAAGTTCAGAGAAAAGGA  848

seq1  AGTCCTGCTGATAGAGGGAGTCCTCCATTTTGTACCAAGCTGAGCAGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGCTGATAGAGGGAGTCCTCCATTTTGTACCAAGCTGAGCAGAAT  898

seq1  TATCCAGATATGGTAGACTGCTACTTTTTTTTTAAACCAGGGTTTCTCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGATATGGTAGACTGCTACTTTTTTTTTAAACCAGGGTTTCTCTA  948

seq1  TATATGTCAAATAAAACTAATTAGTTGACATAAAACTACTTCCAATGGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTCAAATAAAACTAATTAGTTGACATAAAACTACTTCCAATGGTT  998

seq1  TACTTTATGCACTGTAGAAATTACAAACAAAATTGAGATGTAGTTAGCTA  1050
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  TACTTTATGCACTGTAGAAATTAC-AACAAAA-TGAGATGTAGTTAGCTA  1046

seq1  CAAAACTAGAA-GTGAAACATCT-CAGTGG-AATCTTTTGTGT  1090
      |||| |||||| ||| ||||||| |||||| ||||||||||||
seq2  CAAACCTAGAAGGTGGAACATCTCCAGTGGAAATCTTTTGTGT  1089


seq1: chrY_1494352_1494385
seq2: B6Ng01-225P15.g_504_537

seq1  TTTTTTTTTGTTTTGTTTTGTATTGTTTTTTTTT  34
      |||| |||||||||||||||||||||||| ||||
seq2  TTTTGTTTTGTTTTGTTTTGTATTGTTTTGTTTT  34


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