BAC Information

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BAC

Clone NameB6Ng01-226A11
Chromosome17 (Build37)
Map Location 69,530,948 - 69,669,322
singlet/doubletdoublet
Overlap geneEpb4.1l3, 2410021H03Rik
Upstream geneD930040M24Rik, EG622645
Downstream geneZfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535, LOC100043630
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226A11.bB6Ng01-226A11.g
ACCGA040072GA040073
length1,211723
definitionB6Ng01-226A11.b B6Ng01-226A11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,530,948 - 69,532,172)(69,668,601 - 69,669,322)
sequence
gaattcacattttctatccaggctgaatcccaagcagtgtgatttcagcg
accgaccgaggatttttgtagggagagctgtaaagcagagacctctctga
gacaccctgcagtgtccatggctgcagctggcgggtctaattatagtgtg
ggaagccccttaggaatttcagaaagtgttagcaaaaggcccgaagcaaa
tggcagctgtttgccttgggcaccagggagccaaagtccatgtataataa
aaatagcatgccctagccagcctttgctggcctcagacacttacagaatc
actctccttatggctagtaattaataatagactgatggccagttatcaaa
agggttggctccagagatctgggagcaggggggacacatattcatctttc
atagtttaatactgaaagcattggcttccccaggacacattaacttaaag
gtagccaagcaaataaatattgcacaaggttgtttggaatatcaggatat
tacgggtgcagctgtaccctgcctggcctcatgatgataacatgaaggaa
accccaccttctaacatacgatgtgagaagtagtctgtaatggttttttg
tttgtttgtttgtttattttgaaataaagactcaaacacaaggactacca
gcaaagtgacaatgattcattcccatgaggaactacatgcccaagtcttc
acagagttgtgtgtcattttagaaaaccatgctacttccagctaggctct
tggacaagcaaccgccccgcctgccagctaaggtttttcccacaaatgct
gagagcgtcatcccggctatgcttcaagaaaggccgctgccacgctgcct
gctgatgttttcctccagcagccacccatacttgctccttcttgtgagct
cagccccgcccgagctctttcatctctggtggctagttccaccaagccgc
caatagaccaccctgtctggtcttgctcagctcctggtcaaaggctaggt
ggagatatactggctcatcctccttggcctccgcagtgcctgccaggcta
cagactattgatgcccaagagacttcatgtctgcagctccttatcctcct
ctgcaacttggtctcgtctaatccttctcaatccccctctcgatctgctt
gaaatctccattcttggcctgcatcagcttcgctgtctttatggcaatca
cacaattagga

gaattcaaaaagatcacctgcttctacatctcaagtgccaggattgatgg
ccatggcaccacagcaggccaaagattttcatctcaggagacaaggcgat
ctgggaatgacagagggattttctgctgtgtggagatgggggtggatgat
aacctcgaaagaccttgcagtgagcaaactcgagaagaagatagaaatag
tggaaatgtatatcagacaccagaatagaaaatgcagtgttgaaagggaa
tttaaaatgtattcattctgtctcttagatataaatacagaaattggtgc
ctttacaggctatcacccgtccagcatctcaggtctcatggaggaaccag
gcaatcgccaaggtgaagaaagcctctgtgtaccgtgtcccacacgaatg
ctttggctactccttttttgtttgtttgttttgttttgttttcgagacag
ggtttctctgtgaagtcctggaactcactctgtagaccaggctggcctcg
aactcagaaatccgcgtgcctctgcctcccaagtgctgggattaaaggcg
tgcgctaccacacccggctgtctactccttcttccttacccttcaatata
ggccacagataaggaaatttaaggtccagggaggaagggtgattttgttg
aggtaaagaccgtctatgacatgagagtggatggaagtctttctaagctt
caaagcagctttagcacttttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_69530948_69532172
seq2: B6Ng01-226A11.b_47_1257

seq1  GAATTCACATTTTCTATCCAGGCTGAATCCCAAGCAGTGTGATTTCAGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTTCTATCCAGGCTGAATCCCAAGCAGTGTGATTTCAGCG  50

seq1  ACCGACCGAGGATTTTTGTAGGGAGAGCTGTAAAGCAGAGACCTCTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGACCGAGGATTTTTGTAGGGAGAGCTGTAAAGCAGAGACCTCTCTGA  100

seq1  GACACCCTGCAGTGTCCATGGCTGCAGCTGGCGGGTCTAATTATAGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCTGCAGTGTCCATGGCTGCAGCTGGCGGGTCTAATTATAGTGTG  150

seq1  GGAAGCCCCTTAGGAATTTCAGAAAGTGTTAGCAAAAGGCCCGAAGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCCCTTAGGAATTTCAGAAAGTGTTAGCAAAAGGCCCGAAGCAAA  200

seq1  TGGCAGCTGTTTGCCTTGGGCACCAGGGAGCCAAAGTCCATGTATAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCTGTTTGCCTTGGGCACCAGGGAGCCAAAGTCCATGTATAATAA  250

seq1  AAATAGCATGCCCTAGCCAGCCTTTGCTGGCCTCAGACACTTACAGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCATGCCCTAGCCAGCCTTTGCTGGCCTCAGACACTTACAGAATC  300

seq1  ACTCTCCTTATGGCTAGTAATTAATAATAGACTGATGGCCAGTTATCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCTTATGGCTAGTAATTAATAATAGACTGATGGCCAGTTATCAAA  350

seq1  AGGGTTGGCTCCAGAGATCTGGGAGCAGGGGGGACACATATTCATCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGGCTCCAGAGATCTGGGAGCAGGGGGGACACATATTCATCTTTC  400

seq1  ATAGTTTAATACTGAAAGCATTGGCTTCCCCAGGACACATTAACTTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTAATACTGAAAGCATTGGCTTCCCCAGGACACATTAACTTAAAG  450

seq1  GTAGCCAAGCAAATAAATATTGCACAAGGTTGTTTGGAATATCAGGATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAAGCAAATAAATATTGCACAAGGTTGTTTGGAATATCAGGATAT  500

seq1  TACGGGTGCAGCTGTACCCTGCCTGGCCTCATGATGATAACATGAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGTGCAGCTGTACCCTGCCTGGCCTCATGATGATAACATGAAGGAA  550

seq1  ACCCCACCTTCTAACATACGATGTGAGAAGTAGTCTGTAATGGTTTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACCTTCTAACATACGATGTGAGAAGTAGTCTGTAATGGTTTTTTG  600

seq1  TTTGTTTGTTTGTTTATTTTGAAATAAAGACTCAAACACAAGGACTACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTATTTTGAAATAAAGACTCAAACACAAGGACTACCA  650

seq1  GCAAAGTGACAATGATTCATTCCCATGAGGAACTACATGCCCAAGTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTGACAATGATTCATTCCCATGAGGAACTACATGCCCAAGTCTTC  700

seq1  ACAGAGTTGTGTGTCATTTTAGAAAACCATGCTACTTCCAGCTAGGCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTTGTGTGTCATTTTAGAAAACCATGCTACTTCCAGCTAGGCTCT  750

seq1  TGGACAAGCAACCGCCCCGCCTGCCAGCTAAGGTTTTTCCCACAAATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAGCAACCGCCCCGCCTGCCAGCTAAGGTTTTTCCCACAAATGCT  800

seq1  GAGAGCGTCATCCCGGCTATGCTTCAAGAAAGGCCGCTGCCACGCTGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCGTCATCCCGGCTATGCTTCAAGAAAGGCCGCTGCCACGCTGCCT  850

seq1  GCTGATGTTTTCCTCCAGCAGCCACCCATACTTGCTCCTTCTTGTGAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGTTTTCCTCCAGCAGCCACCCATACTTGCTCCTTCTTGTGAGCT  900

seq1  CAGCCCCGCCCGAGCTCTTTCAATCTCTGGTGGCTAGTTCCACCAAGCCG  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAGCCCCGCCCGAGCTCTTTC-ATCTCTGGTGGCTAGTTCCACCAAGCCG  949

seq1  CCAATAGACCACCCTGTCTGGTCTTGCTCAGCTCCTGGTCAAAGGCTAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGACCACCCTGTCTGGTCTTGCTCAGCTCCTGGTCAAAGGCTAGG  999

seq1  TGGAGAATATACTGGCCCATCCTCCTTGGCCTCCGCAGTTGCCTGCCCAG  1050
      ||||| |||||||||| ||||||||||||||||||||| |||||| ||||
seq2  TGGAG-ATATACTGGCTCATCCTCCTTGGCCTCCGCAG-TGCCTG-CCAG  1046

seq1  GCTACAGACTATTGATGCCCCAAGAGACTTTCATGTCTGCAGCTTCTTAT  1100
      ||||||||||||||||| |||||||||| ||||||||||||||| |||||
seq2  GCTACAGACTATTGATG-CCCAAGAGAC-TTCATGTCTGCAGCTCCTTAT  1094

seq1  CCT-CTCTGC-ACCTGGTCTTCGTCTAATCC-TCTCCATCCCCCTCTTCC  1147
      ||| |||||| || ||||| ||||||||||| |||| ||||||||||  |
seq2  CCTCCTCTGCAACTTGGTC-TCGTCTAATCCTTCTCAATCCCCCTCT--C  1141

seq1  TATCCTGCCTGGAAATCTCCATATCTTTGCCCTGCAATCAGCTTCTGCTG  1197
       || ||| || ||||||||||| || ||| ||||| ||||||||| ||||
seq2  GAT-CTG-CTTGAAATCTCCAT-TC-TTGGCCTGC-ATCAGCTTC-GCTG  1185

seq1  TCTTTATTTGGCCAATCA-ACAATTAGGA  1225
      |||||||   | |||||| ||||||||||
seq2  TCTTTAT---GGCAATCACACAATTAGGA  1211


seq1: chr17_69668601_69669322
seq2: B6Ng01-226A11.g_66_788 (reverse)

seq1  TGCAAAGTGCTAAAGCTGCTTTGCAGCTCTGACTGACTTCCATCCACTCT  50
      || |||||||||||||||||||| ||||  ||  ||||||||||||||||
seq2  TGAAAAGTGCTAAAGCTGCTTTGAAGCTTAGAAAGACTTCCATCCACTCT  50

seq1  CATCTCATAGACGGTCTTTACCTCAAC-AAATCACCCTTCCTCCCTGGAC  99
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CATGTCATAGACGGTCTTTACCTCAACAAAATCACCCTTCCTCCCTGGAC  100

seq1  CTTAAATTTCCTTATCTGTGGCCTATATTGAAGGGTAAGGAAGAAGGAGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATTTCCTTATCTGTGGCCTATATTGAAGGGTAAGGAAGAAGGAGT  150

seq1  AGACAGCCGGGTGTGGTAGCGCACGCCTTTAATCCCAGCACTTGGGAGGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCCGGGTGTGGTAGCGCACGCCTTTAATCCCAGCACTTGGGAGGC  200

seq1  AGAGGCACGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCACGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAG  250

seq1  TTCCAGGACTTCACAGAGAAACCCTGTCTCGAAAACAAAACAAAACAAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACTTCACAGAGAAACCCTGTCTCGAAAACAAAACAAAACAAAC  300

seq1  AAACAAAAAAGGAGTAGCCAAAGCATTCGTGTGGGACACGGTACACAGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAAGGAGTAGCCAAAGCATTCGTGTGGGACACGGTACACAGAG  350

seq1  GCTTTCTTCACCTTGGCGATTGCCTGGTTCCTCCATGAGACCTGAGATGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTCACCTTGGCGATTGCCTGGTTCCTCCATGAGACCTGAGATGC  400

seq1  TGGACGGGTGATAGCCTGTAAAGGCACCAATTTCTGTATTTATATCTAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGGGTGATAGCCTGTAAAGGCACCAATTTCTGTATTTATATCTAAG  450

seq1  AGACAGAATGAATACATTTTAAATTCCCTTTCAACACTGCATTTTCTATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAATGAATACATTTTAAATTCCCTTTCAACACTGCATTTTCTATT  500

seq1  CTGGTGTCTGATATACATTTCCACTATTTCTATCTTCTTCTCGAGTTTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTCTGATATACATTTCCACTATTTCTATCTTCTTCTCGAGTTTGC  550

seq1  TCACTGCAAGGTCTTTCGAGGTTATCATCCACCCCCATCTCCACACAGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCAAGGTCTTTCGAGGTTATCATCCACCCCCATCTCCACACAGCA  600

seq1  GAAAATCCCTCTGTCATTCCCAGATCGCCTTGTCTCCTGAGATGAAAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCCCTCTGTCATTCCCAGATCGCCTTGTCTCCTGAGATGAAAATC  650

seq1  TTTGGCCTGCTGTGGTGCCATGGCCATCAATCCTGGCACTTGAGATGTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCTGCTGTGGTGCCATGGCCATCAATCCTGGCACTTGAGATGTAG  700

seq1  AAGCAGGTGATCTTTTTGAATTC  722
      |||||||||||||||||||||||
seq2  AAGCAGGTGATCTTTTTGAATTC  723


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