BAC Information

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BAC

Clone NameB6Ng01-227B06
Chromosome17 (Build37)
Map Location 24,433,557 - 24,588,464
singlet/doubletdoublet
Overlap geneAbca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1
Upstream geneEG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf
Downstream gene1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227B06.bB6Ng01-227B06.g
ACCGA040841GA040842
length1,126530
definitionB6Ng01-227B06.b B6Ng01-227B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,433,557 - 24,434,680)(24,587,929 - 24,588,464)
sequence
gaattctttaccacccttagctttctagagcagagaagacgtggggtttg
ttgtcaagacatctgttcagatctcagtaaacttgtaatagcatttgttt
tggaacgttcctatggggagaaatgtaaaatatatctagtacagaggtga
cgttttggtatttttgagcccaggcataaaaaatagtgactggctttctc
tctgccttagtcagggtttctattcctgcataaaacatcatgaccaagaa
gcaagttggggaggaaagggtttattcaggttatactcccacactgctgt
tgatgaccaaaggaagtcaggactggagctcaagcaggtcaggaagcagg
agctgatgcagagtccatggagggatgttccttactagcttgcttcccct
ggcttgctcaacttgctttcttatagaacccaggactaccagtccaggga
tggcaccacccacaatgggccctcccacccttgatcactaattgagaaaa
tgccttacagctggatctcatggaggcatttcctcgagggaggctccttt
ccctgtgatacctccagcttgtgtcaagttgacacacaaaaccagccagg
acaattgacccccctttttttttcagtccctcttggagtgccttttcttg
gattctgcctgccatcctaggagaagccaaaatcatctgagagacaaccc
agtggagcactggatgctacagttagcagctctagtaagagcccagttgt
tagccagcactattttcccaggtgtgagaatgagccaccttggaaattct
agatcattctagccccaggcaaaaaatttaatgtggggcagaagaaccat
gcagctcagtacagcccgacataggagtcttctgggggcagggttaggca
agatgtgcaaggacttgggctgaatctctaggacaaagtggggaaaaaca
tgagaaaacactaaaatagttgccagtttaagccagaattttttgagttg
agcattcaggaacccagtatgtacagtgatcagagccactgtggcactta
ttttttttaaacctctagattctagaaccacgtgttcatgttttgggggg
ctagacagtgaagggtgaaagcagga
actgccttggaggactttgtccagcacaagattcagaagacctgccatcg
ggccccgcaggaggccctgcccaccacccctgctgccactgcactgctgg
accaggaggtgagcccattctagttggtaccatcctcactcctctggttt
ggctcatttgtgaaactgggtgttttgaccaacctgtgcagctggtttat
gacaagtggcagatatgcatggctgtgagtgagggaagaccaggctatac
tagtaagagggccgtagtgctttccatggccttagcagcctacatagctc
aaccttagcagcctacatagctgtagggtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtcttaagagatcatggaaacttctgtctttttccttatctcctg
tcctgtacatatggttcccagggatctcttgcagtagaccctactgggta
ctaggacctccaggaagataagccacttgattggatcccaatggtggatg
tactcactgtcttactaaattagacagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24433557_24434680
seq2: B6Ng01-227B06.b_47_1172

seq1  GAATTCTTTACCACCCTTAGCTTTCTAGAGCAGAGAAGACGTGGGGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACCACCCTTAGCTTTCTAGAGCAGAGAAGACGTGGGGTTTG  50

seq1  TTGTCAAGACATCTGTTCAGATCTCAGTAAACTTGTAATAGCATTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAGACATCTGTTCAGATCTCAGTAAACTTGTAATAGCATTTGTTT  100

seq1  TGGAACGTTCCTATGGGGAGAAATGTAAAATATATCTAGTACAGAGGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACGTTCCTATGGGGAGAAATGTAAAATATATCTAGTACAGAGGTGA  150

seq1  CGTTTTGGTATTTTTGAGCCCAGGCATAAAAAATAGTGACTGGCTTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTGGTATTTTTGAGCCCAGGCATAAAAAATAGTGACTGGCTTTCTC  200

seq1  TCTGCCTTAGTCAGGGTTTCTATTCCTGCATAAAACATCATGACCAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTAGTCAGGGTTTCTATTCCTGCATAAAACATCATGACCAAGAA  250

seq1  GCAAGTTGGGGAGGAAAGGGTTTATTCAGGTTATACTCCCACACTGCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTGGGGAGGAAAGGGTTTATTCAGGTTATACTCCCACACTGCTGT  300

seq1  TGATGACCAAAGGAAGTCAGGACTGGAGCTCAAGCAGGTCAGGAAGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACCAAAGGAAGTCAGGACTGGAGCTCAAGCAGGTCAGGAAGCAGG  350

seq1  AGCTGATGCAGAGTCCATGGAGGGATGTTCCTTACTAGCTTGCTTCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATGCAGAGTCCATGGAGGGATGTTCCTTACTAGCTTGCTTCCCCT  400

seq1  GGCTTGCTCAACTTGCTTTCTTATAGAACCCAGGACTACCAGTCCAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCTCAACTTGCTTTCTTATAGAACCCAGGACTACCAGTCCAGGGA  450

seq1  TGGCACCACCCACAATGGGCCCTCCCACCCTTGATCACTAATTGAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCACCCACAATGGGCCCTCCCACCCTTGATCACTAATTGAGAAAA  500

seq1  TGCCTTACAGCTGGATCTCATGGAGGCATTTCCTCGAGGGAGGCTCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTACAGCTGGATCTCATGGAGGCATTTCCTCGAGGGAGGCTCCTTT  550

seq1  CCCTGTGATACCTCCAGCTTGTGTCAAGTTGACACACAAAACCAGCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGATACCTCCAGCTTGTGTCAAGTTGACACACAAAACCAGCCAGG  600

seq1  ACAATTGACCCCCCTTTTTTTTTCAGTCCCTCTTGGAGTGCCTTTTCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGACCCCCCTTTTTTTTTCAGTCCCTCTTGGAGTGCCTTTTCTTG  650

seq1  GATTCTGCCTGCCATCCTAGGAGAAGCCAAAATCATCTGAGAGACAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGCCTGCCATCCTAGGAGAAGCCAAAATCATCTGAGAGACAACCC  700

seq1  AGTGGAGCACTGGATGCTACAGTTAGCAGCTCTAGTAAGAGCCCAGTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGCACTGGATGCTACAGTTAGCAGCTCTAGTAAGAGCCCAGTTGT  750

seq1  TAGCCAGCACTATTTTCCCAGGTGTGAGAATGAGCCACCTTGGAAATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGCACTATTTTCCCAGGTGTGAGAATGAGCCACCTTGGAAATTCT  800

seq1  AGATCATTCTAGCCCCAGGCAAAAAA-TTAATGTGGGGCAGAAGAACCAT  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGATCATTCTAGCCCCAGGCAAAAAATTTAATGTGGGGCAGAAGAACCAT  850

seq1  GCAGCTCAGTACAG-CCGACATAGGAGTCTTCTGGGGGCAGGGTTAGGCA  898
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCAGCTCAGTACAGCCCGACATAGGAGTCTTCTGGGGGCAGGGTTAGGCA  900

seq1  AGATGTGCAAGGACTTGGGCTGAATCTCTAGGACAAAGTGGGGAAAAACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGCAAGGACTTGGGCTGAATCTCTAGGACAAAGTGGGGAAAAACA  950

seq1  TGAG-AAACACTAAAATAGTTGCCAGTTTAAGCCAGAATTTTTTGAGTTG  997
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAACACTAAAATAGTTGCCAGTTTAAGCCAGAATTTTTTGAGTTG  1000

seq1  AGCAATTCAGGAACCCAGTATTGTACAAGTGATCCAGAGGCCACTGTGGC  1047
      ||| |||||||||||||||| ||||| |||||| |||| |||||||||||
seq2  AGC-ATTCAGGAACCCAGTA-TGTAC-AGTGAT-CAGA-GCCACTGTGGC  1045

seq1  AC-TATTTTTTTTAAACCTTCTAGATTCTAGAA-CACGTG-TCATGTTTT  1094
      || ||||||||||||||| |||||||||||||| |||||| |||||||||
seq2  ACTTATTTTTTTTAAACC-TCTAGATTCTAGAACCACGTGTTCATGTTTT  1094

seq1  GGGGGCAAGGACAGTGA--GGTGAAGGCAGGA  1124
      |||||    ||||||||  |||||| ||||||
seq2  GGGGGGCTAGACAGTGAAGGGTGAAAGCAGGA  1126

seq1: chr17_24587929_24588464
seq2: B6Ng01-227B06.g_65_600 (reverse)

seq1  GAGCTGTCTAATTTAGTAAGACAGTGAGTACATCCACCATTGGGATCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTCTAATTTAGTAAGACAGTGAGTACATCCACCATTGGGATCCAA  50

seq1  TCAAGTGGCTTATCTTCCTGGAGGTCCTAGTACCCAGTAGGGTCTACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGGCTTATCTTCCTGGAGGTCCTAGTACCCAGTAGGGTCTACTGC  100

seq1  AAGAGATCCCTGGGAACCATATGTACAGGACAGGAGATAAGGAAAAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATCCCTGGGAACCATATGTACAGGACAGGAGATAAGGAAAAAGAC  150

seq1  AGAAGTTTCCATGATCTCTTAAGACACACACACACACACACACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTTCCATGATCTCTTAAGACACACACACACACACACACACACACA  200

seq1  CACCCTACAGCTATGTAGGCTGCTAAGGTTGAGCTATGTAGGCTGCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTACAGCTATGTAGGCTGCTAAGGTTGAGCTATGTAGGCTGCTAAG  250

seq1  GCCATGGAAAGCACTACGGCCCTCTTACTAGTATAGCCTGGTCTTCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGAAAGCACTACGGCCCTCTTACTAGTATAGCCTGGTCTTCCCTC  300

seq1  ACTCACAGCCATGCATATCTGCCACTTGTCATAAACCAGCTGCACAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGCCATGCATATCTGCCACTTGTCATAAACCAGCTGCACAGGTT  350

seq1  GGTCAAAACACCCAGTTTCACAAATGAGCCAAACCAGAGGAGTGAGGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAACACCCAGTTTCACAAATGAGCCAAACCAGAGGAGTGAGGATG  400

seq1  GTACCAACTAGAATGGGCTCACCTCCTGGTCCAGCAGTGCAGTGGCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAACTAGAATGGGCTCACCTCCTGGTCCAGCAGTGCAGTGGCAGCA  450

seq1  GGGGTGGTGGGCAGGGCCTCCTGCGGGGCCCGATGGCAGGTCTTCTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGTGGGCAGGGCCTCCTGCGGGGCCCGATGGCAGGTCTTCTGAAT  500

seq1  CTTGTGCTGGACAAAGTCCTCCAAGGCAGTGAATTC  536
      ||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCTGGACAAAGTCCTCCAAGGCAGTGAATTC  536