BAC Information

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BAC

Clone NameB6Ng01-227J22
Chromosome17 (Build37)
Map Location 26,995,766 - 27,163,141
singlet/doubletdoublet
Overlap geneKifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1
Upstream geneWdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5
Downstream geneGgnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227J22.bB6Ng01-227J22.g
ACCGA041245GA041246
length1,035491
definitionB6Ng01-227J22.b B6Ng01-227J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,995,766 - 26,996,790)(27,162,645 - 27,163,141)
sequence
gaattccatatgtagaccaagctggccttgacctcagagttctatctgcc
tatgcctcccaagtgctgggattaaaggcaagtaccgccatcacacagcc
aagattcctattatgttaaaattatatatgtcatgaatatattcactcct
gcctctctgtgtgaccctaactggtccagaactaagtagaccagactggt
ctcaaactcactcacagaaatccacctgcctctgcccccaatgaaagcat
gtgtcaccatgcccagctatgaatatgctcttaaaatttacttactcatt
tattttatgtgcattggtgttttgcctccatgtatgcctaagtgaggata
taggattctctagaaccggacttacagaccgttctgagctgctgtgtggg
tgctgggagttaacccctgtggaggagcagccagtgcttgtaaccactga
gccatctctacagctccattttcactgattgtttcttatttttcctctga
ttttaaatttattttatctttaaaaagatttgtttatgtttattttatat
gtattggtgtgttgactgagtgcatatctgcatgagggtgttgaatcccc
tggaactggggttactgacagttgtgagcagccatgtggctggtggaagt
tgaactcaggacctctggaagagcagccagtactctttaatccctgagcc
atctctccagccccttatttttagttgaaatagaatgacatcactttctc
ctctccgtttcctccctctgctcccagataccttctcgtgaatcattcct
atgtcttcctcgagcctgatagcctttttttctttaatcagtattgataa
gcctgtttttctttgattattattgctactcacatatgcttgtgtgtatg
taatacgtgtatgcacaaaatatataaataaaagcacaaccctgctgagt
cttggttgtgtatcaagggctaccatttttacgctgggacaaccaataag
ggctcgtctcttgaaggggaaaatgccttcttcca
aaattgctcccaggagataccaccaggccctcaaggtggcagaactttag
tcccagaggattgcaaggtcttcctgtcagttgaggaagtggggtgccct
gctctgtggtaaccagggcaacactctggggttagtctccatttttcctc
cttgagacagggtctcactgtatagccttggctatcctctctggaagacc
aggttggcttgcctgcctctgcctcttaagtactgggattaaggtcacac
atcactacccgcgcctcacctctgctttctctcacctgtctctgcaggtg
acaagtgacggtggtctccaccaagacctgaaaaatggcatctggacaag
gaccaggtcccccgaaggtgggctgcgatgagtccccgtccccttctggt
aagagcctcctgcccctcagaacctcattaagtacaagacttagaagtac
actggactggtgtgcgcacatgcgcatggtgtgtgtgcgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_26995766_26996790
seq2: B6Ng01-227J22.b_47_1077

seq1  GAATTCCATATGTAGACCAAGCTGGCCTTGACCTCAGAGTTCTATCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATGTAGACCAAGCTGGCCTTGACCTCAGAGTTCTATCTGCC  50

seq1  TATGCCTCCCAAGTGCTGGGATTAAAGGCAAGTACCGCCATCACACAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTCCCAAGTGCTGGGATTAAAGGCAAGTACCGCCATCACACAGCC  100

seq1  AAGATTCCTATTATGTTAAAATTATATATGTCATGAATATATTCACTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCCTATTATGTTAAAATTATATATGTCATGAATATATTCACTCCT  150

seq1  GCCTCTCTGTGTGACCCTAACTGGTCCAGAACTAAGTAGACCAGACTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTGTGTGACCCTAACTGGTCCAGAACTAAGTAGACCAGACTGGT  200

seq1  CTCAAACTCACTCACAGAAATCCACCTGCCTCTGCCCCCAATGAAAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTCACTCACAGAAATCCACCTGCCTCTGCCCCCAATGAAAGCAT  250

seq1  GTGTCACCATGCCCAGCTATGAATATGCTCTTAAAATTTACTTACTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACCATGCCCAGCTATGAATATGCTCTTAAAATTTACTTACTCATT  300

seq1  TATTTTATGTGCATTGGTGTTTTGCCTCCATGTATGCCTAAGTGAGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGTGCATTGGTGTTTTGCCTCCATGTATGCCTAAGTGAGGATA  350

seq1  TAGGATTCTCTAGAACCGGACTTACAGACCGTTCTGAGCTGCTGTGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTCTCTAGAACCGGACTTACAGACCGTTCTGAGCTGCTGTGTGGG  400

seq1  TGCTGGGAGTTAACCCCTGTGGAGGAGCAGCCAGTGCTTGTAACCACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGAGTTAACCCCTGTGGAGGAGCAGCCAGTGCTTGTAACCACTGA  450

seq1  GCCATCTCTACAGCTCCATTTTCACTGATTGTTTCTTATTTTTCCTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCTACAGCTCCATTTTCACTGATTGTTTCTTATTTTTCCTCTGA  500

seq1  TTTTAAATTTATTTTATCTTTAAAAAGATTTGTTTATGTTTATTTTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTTATTTTATCTTTAAAAAGATTTGTTTATGTTTATTTTATAT  550

seq1  GTATTGGTGTGTTGACTGAGTGCATATCTGCATGAGGGTGTTGAATCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGTGTGTTGACTGAGTGCATATCTGCATGAGGGTGTTGAATCCCC  600

seq1  TGGAACTGGGGTTACTGACAGTTGTGAGCAGCCATGTGGCTGGTGGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTGGGGTTACTGACAGTTGTGAGCAGCCATGTGGCTGGTGGAAGT  650

seq1  TGAACTCAGGACCTCTGGAAGAGCAGCCAGTACTCTTTAATCCCTGAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGGACCTCTGGAAGAGCAGCCAGTACTCTTTAATCCCTGAGCC  700

seq1  ATCTCTCCAGCCCCTTATTTTTAGTTGAAATAGAATGACATCACTTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCAGCCCCTTATTTTTAGTTGAAATAGAATGACATCACTTTCTC  750

seq1  CTCTCCGTTTCCTCCCTCTGCTCCCAGATACCTTCTCGTGAATCATTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCGTTTCCTCCCTCTGCTCCCAGATACCTTCTCGTGAATCATTCCT  800

seq1  ATGTCTTCCTCGAGCCTGATAGCCTTTTTTTCTTTAATCAGTATTGATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCCTCGAGCCTGATAGCCTTTTTTTCTTTAATCAGTATTGATAA  850

seq1  GCCTGTTTTTCTTTGATTATTATTGCTACTCACATATGCTTGTGTGTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTTTTCTTTGATTATTATTGCTACTCACATATGCTTGTGTGTATG  900

seq1  TAATACGTGTATGCAC-AAATATATAAATAAAAGCACAA-CCTGCTGAGT  948
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  TAATACGTGTATGCACAAAATATATAAATAAAAGCACAACCCTGCTGAGT  950

seq1  CTTGG-TGTGTATCAA-GGCTACCA-TTTTACGCT-GGACAACCAATAAG  994
      ||||| |||||||||| |||||||| ||||||||| ||||||||||||| 
seq2  CTTGGTTGTGTATCAAGGGCTACCATTTTTACGCTGGGACAACCAATAA-  999

seq1  GGGCTCGTCTCTTGAAGGGGAAAATG-CTTCT  1025
      |||||||||||||||||||||||||| |||||
seq2  GGGCTCGTCTCTTGAAGGGGAAAATGCCTTCT  1031

seq1: chr17_27162645_27163141
seq2: B6Ng01-227J22.g_67_563 (reverse)

seq1  TGCGCACACACACCATGCGCATGTGCGCACACCAGTCCAGTGTACTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCACACACACCATGCGCATGTGCGCACACCAGTCCAGTGTACTTCTA  50

seq1  AGTCTTGTACTTAATGAGGTTCTGAGGGGCAGGAGGCTCTTACCAGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGTACTTAATGAGGTTCTGAGGGGCAGGAGGCTCTTACCAGAAGG  100

seq1  GGACGGGGACTCATCGCAGCCCACCTTCGGGGGACCTGGTCCTTGTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGGGACTCATCGCAGCCCACCTTCGGGGGACCTGGTCCTTGTCCAG  150

seq1  ATGCCATTTTTCAGGTCTTGGTGGAGACCACCGTCACTTGTCACCTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATTTTTCAGGTCTTGGTGGAGACCACCGTCACTTGTCACCTGCAG  200

seq1  AGACAGGTGAGAGAAAGCAGAGGTGAGGCGCGGGTAGTGATGTGTGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGTGAGAGAAAGCAGAGGTGAGGCGCGGGTAGTGATGTGTGACCT  250

seq1  TAATCCCAGTACTTAAGAGGCAGAGGCAGGCAAGCCAACCTGGTCTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGTACTTAAGAGGCAGAGGCAGGCAAGCCAACCTGGTCTTCCA  300

seq1  GAGAGGATAGCCAAGGCTATACAGTGAGACCCTGTCTCAAGGAGGAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGATAGCCAAGGCTATACAGTGAGACCCTGTCTCAAGGAGGAAAAA  350

seq1  TGGAGACTAACCCCAGAGTGTTGCCCTGGTTACCACAGAGCAGGGCACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACTAACCCCAGAGTGTTGCCCTGGTTACCACAGAGCAGGGCACCC  400

seq1  CACTTCCTCAACTGACAGGAAGACCTTGCAATCCTCTGGGACTAAAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTCAACTGACAGGAAGACCTTGCAATCCTCTGGGACTAAAGTTC  450

seq1  TGCCACCTTGAGGGCCTGGTGGTATCTCCTGGGAGCAATTTGAATTC  497
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCTTGAGGGCCTGGTGGTATCTCCTGGGAGCAATTTGAATTC  497