BAC Information

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BAC

Clone NameB6Ng01-227M03
Chromosome17 (Build37)
Map Location 54,505,396 - 54,684,469
singlet/doubletdoublet
Overlap gene1700025K24Rik, Trp53-ps, LOC240117
Upstream geneEfhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7, LOC668529
Downstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227M03.bB6Ng01-227M03.g
ACCGA041345GA041346
length1,188859
definitionB6Ng01-227M03.b B6Ng01-227M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,683,295 - 54,684,469)(54,505,396 - 54,506,254)
sequence
gaattcaccattcctgacatctgtgttaactgaaactactatatctctgt
gcccccaagtcatattgcagaacccaattaattcttcaattaagaaataa
actctggctgattttcagttgtaggcttcatgtgcataaagaaaacttga
ttgtgtatcaacatttctgaatttctagatgaaacaagtgcccttatttc
aaatctaagattctacagacaaagtaggtttacttgtcaggtttttgtat
acttgggtgcacatgtgttgttatatgtgcacaagatctcccattaggaa
aacacccagagtggaaaataaaattggagttccataaaataattctttcc
atctttatcaatgaggttttggattctagaacatttcctgagattgtgct
ctttctcaactcccttttctgtacgtttcaaatccctactcctctactta
tcttttcaagaagccttgaggtacacaaaggaaataatttatcttggtgt
aaaagtgccaggtatttaagagctggtgaacaaacaagagactgaggaac
aaacataaaccttcatagagcatttctattgaggcccagccttcaggcaa
ttcacctgtttcctctgctctctttattttatacacactcaatccatgct
ggtttgcacaggtacacaccatatctcctcccagaaaaaaagaaggatat
gggcaggtgcaatcataatactttagcaacgcagcatggcacactccata
aacaaaataaattcttctcagggggctgagcttttaccaaggcaaatgct
ctaatttgccctaatgttctatcctctaaacaatctcaggatctagagat
gggggaatgcagtggctccagcagggctgaatggaagcatggtgagttca
aagcactagagcttaaaaagccaaccactcattaagacattgaaatgcaa
tattgactctaagcaaagatgagcgatgaaatgcaaatataatgtgagta
gaaaatagcacacttttttttaaccctttgaataatggcaatcttaacca
ttacaaagtcaatttcttttttcttttttcttaatcttaaccttttcttt
caaaaggtcttcttcaaatgccagttcaatgaaagttactgcaattaacc
taaagtaggcagggtatctgcattactaagttggcagg
gaattctaagttactgatttggagctgggaattgaacttaggtgctctga
aaggagtagatgcccttacctgctgagccatctctttgacacaaaaataa
gactttggatattttagctacatgtgtaaattcctgtatttaaaataaaa
caaattgaatgccaagatttatgaagatttaggttgtaaatataaatgga
attatctttctaaaggatattgaaaagcatttcagaccatttaagaaatg
gaggtataagattcatattcaagaatatattcattgaagttacatttaaa
tctaatagcttgatttataacctttaaaattccatttagcaattagtcaa
ataagtgatgaaacattagtcaaagaaatataagataagatttaaaattc
aggttagcattaggagtttgtgaccaaaaaaatcaatgcataatgctatg
ttgaagggaagctactcaaaaaacattgagcaaatcatattaagtacatg
ttattgccaactaagtatttatatatccattttgcaatcaacatattttt
ctaaaagtagagagagtgtacttgtctgggataggtattttctctaggtc
agaagagtttgcatgagaactatgctgatacttataaaaagccttcatag
aataatgttaaatagtaaattgctttatccaagaatacatttatgaatta
aagtgagcctatagcttaaacataaagcagattaaattgtgcaggaaaat
gtcggtaatcttaaaaataaacatatcattatattactgaatgtacttct
gggtgtgaggctgtgggttctgttaaatttgagtgggcaggtggggaggg
gataggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_54683295_54684469
seq2: B6Ng01-227M03.b_46_1233 (reverse)

seq1  CCTG-CTACTTAGGTAATTGCAG-TACCCTG-CTAC-TTAGG-TAATTGC  45
      |||| | ||||| |||| ||||| ||||||| |||| ||||| |||||||
seq2  CCTGCCAACTTA-GTAA-TGCAGATACCCTGCCTACTTTAGGTTAATTGC  48

seq1  AGTTACTTTCATTGACCT-GCATTTG-AGAAGA-CTTTTGAAAG-AAAGG  91
      ||| ||||||||||| || ||||||| |||||| |||||||||| |||||
seq2  AGTAACTTTCATTGAACTGGCATTTGAAGAAGACCTTTTGAAAGAAAAGG  98

seq1  TT-AGATTAGAAAAAGAG---AAAGAAA-TGACTTTGTAATGGGTTAGAT  136
      || ||||||  |||| ||   ||||||| |||||||||||||| | ||||
seq2  TTAAGATTAAGAAAAAAGAAAAAAGAAATTGACTTTGTAATGGTTAAGAT  148

seq1  TGCCA-TATTCAAAGGTTTAAAAAAAAGTGTGCTA-TTTCTACTCACATT  184
      ||||| |||||||||| |||||||||||||||||| ||||||||||||||
seq2  TGCCATTATTCAAAGGGTTAAAAAAAAGTGTGCTATTTTCTACTCACATT  198

seq1  ATATTTGCATTTCATCGCTCCATCTTTGCTTAGAGTCAATATTGCATTTC  234
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATATTTGCATTTCATCGCT-CATCTTTGCTTAGAGTCAATATTGCATTTC  247

seq1  AATGTCTTAATGAGTGGTTGGCTTTTTAAGCTCTAGTGCTTTGAACTCAC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTAATGAGTGGTTGGCTTTTTAAGCTCTAGTGCTTTGAACTCAC  297

seq1  CATGCTTCCATTCAGCCCTGCTGGAGCCACTGCATTCCCCCATCTCTAGA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTCCATTCAGCCCTGCTGGAGCCACTGCATTCCCCCATCTCTAGA  347

seq1  TCCTGAGATTGTTTAGAGGATAGAACATTAGGGCAAATTAGAGCATTTGC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGATTGTTTAGAGGATAGAACATTAGGGCAAATTAGAGCATTTGC  397

seq1  CTTGGTAAAAGCTCAGCCCCCTGAGAAGAATTTATTTTGTTTATGGAGTG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAAAAGCTCAGCCCCCTGAGAAGAATTTATTTTGTTTATGGAGTG  447

seq1  TGCCATGCTGCGTTGCTAAAGTATTATGATTGCACCTGCCCATATCCTTC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGCTGCGTTGCTAAAGTATTATGATTGCACCTGCCCATATCCTTC  497

seq1  TTTTTTTCTGGGAGGAGATATGGTGTGTACCTGTGCAAACCAGCATGGAT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTGGGAGGAGATATGGTGTGTACCTGTGCAAACCAGCATGGAT  547

seq1  TGAGTGTGTATAAAATAAAGAGAGCAGAGGAAACAGGTGAATTGCCTGAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGTATAAAATAAAGAGAGCAGAGGAAACAGGTGAATTGCCTGAA  597

seq1  GGCTGGGCCTCAATAGAAATGCTCTATGAAGGTTTATGTTTGTTCCTCAG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGCCTCAATAGAAATGCTCTATGAAGGTTTATGTTTGTTCCTCAG  647

seq1  TCTCTTGTTTGTTCACCAGCTCTTAAATACCTGGCACTTTTACACCAAGA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGTTTGTTCACCAGCTCTTAAATACCTGGCACTTTTACACCAAGA  697

seq1  TAAATTATTTCCTTTGTGTACCTCAAGGCTTCTTGAAAAGATAAGTAGAG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATTTCCTTTGTGTACCTCAAGGCTTCTTGAAAAGATAAGTAGAG  747

seq1  GAGTAGGGATTTGAAACGTACAGAAAAGGGAGTTGAGAAAGAGCACAATC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGGATTTGAAACGTACAGAAAAGGGAGTTGAGAAAGAGCACAATC  797

seq1  TCAGGAAATGTTCTAGAATCCAAAACCTCATTGATAAAGATGGAAAGAAT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAATGTTCTAGAATCCAAAACCTCATTGATAAAGATGGAAAGAAT  847

seq1  TATTTTATGGAACTCCAATTTTATTTTCCACTCTGGGTGTTTTCCTAATG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGGAACTCCAATTTTATTTTCCACTCTGGGTGTTTTCCTAATG  897

seq1  GGAGATCTTGTGCACATATAACAACACATGTGCACCCAAGTATACAAAAA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCTTGTGCACATATAACAACACATGTGCACCCAAGTATACAAAAA  947

seq1  CCTGACAAGTAAACCTACTTTGTCTGTAGAATCTTAGATTTGAAATAAGG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAAGTAAACCTACTTTGTCTGTAGAATCTTAGATTTGAAATAAGG  997

seq1  GCACTTGTTTCATCTAGAAATTCAGAAATGTTGATACACAATCAAGTTTT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGTTTCATCTAGAAATTCAGAAATGTTGATACACAATCAAGTTTT  1047

seq1  CTTTATGCACATGAAGCCTACAACTGAAAATCAGCCAGAGTTTATTTCTT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGCACATGAAGCCTACAACTGAAAATCAGCCAGAGTTTATTTCTT  1097

seq1  AATTGAAGAATTAATTGGGTTCTGCAATATGACTTGGGGGCACAGAGATA  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGAATTAATTGGGTTCTGCAATATGACTTGGGGGCACAGAGATA  1147

seq1  TAGTAGTTTCAGTTAACACAGATGTCAGGAATGGTGAATTC  1175
      |||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTTTCAGTTAACACAGATGTCAGGAATGGTGAATTC  1188

seq1: chr17_54505396_54506254
seq2: B6Ng01-227M03.g_70_928

seq1  GAATTCTAAGTTACTGATTTGGAGCTGGGAATTGAACTTAGGTGCTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTTACTGATTTGGAGCTGGGAATTGAACTTAGGTGCTCTGA  50

seq1  AAGGAGTAGATGCCCTTACCTGCTGAGCCATCTCTTTGACACAAAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTAGATGCCCTTACCTGCTGAGCCATCTCTTTGACACAAAAATAA  100

seq1  GACTTTGGATATTTTAGCTACATGTGTAAATTCCTGTATTTAAAATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGGATATTTTAGCTACATGTGTAAATTCCTGTATTTAAAATAAAA  150

seq1  CAAATTGAATGCCAAGATTTATGAAGATTTAGGTTGTAAATATAAATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGAATGCCAAGATTTATGAAGATTTAGGTTGTAAATATAAATGGA  200

seq1  ATTATCTTTCTAAAGGATATTGAAAAGCATTTCAGACCATTTAAGAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTTCTAAAGGATATTGAAAAGCATTTCAGACCATTTAAGAAATG  250

seq1  GAGGTATAAGATTCATATTCAAGAATATATTCATTGAAGTTACATTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATAAGATTCATATTCAAGAATATATTCATTGAAGTTACATTTAAA  300

seq1  TCTAATAGCTTGATTTATAACCTTTAAAATTCCATTTAGCAATTAGTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAGCTTGATTTATAACCTTTAAAATTCCATTTAGCAATTAGTCAA  350

seq1  ATAAGTGATGAAACATTAGTCAAAGAAATATAAGATAAGATTTAAAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGATGAAACATTAGTCAAAGAAATATAAGATAAGATTTAAAATTC  400

seq1  AGGTTAGCATTAGGAGTTTGTGACCAAAAAAATCAATGCATAATGCTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGCATTAGGAGTTTGTGACCAAAAAAATCAATGCATAATGCTATG  450

seq1  TTGAAGGGAAGCTACTCAAAAAACATTGAGCAAATCATATTAAGTACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGGAAGCTACTCAAAAAACATTGAGCAAATCATATTAAGTACATG  500

seq1  TTATTGCCAACTAAGTATTTATATATCCATTTTGCAATCAACATATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCCAACTAAGTATTTATATATCCATTTTGCAATCAACATATTTTT  550

seq1  CTAAAAGTAGAGAGAGTGTACTTGTCTGGGATAGGTATTTTCTCTAGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGTAGAGAGAGTGTACTTGTCTGGGATAGGTATTTTCTCTAGGTC  600

seq1  AGAAGAGTTTGCATGAGAACTATGCTGATACTTATAAAAAGCCTTCATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGTTTGCATGAGAACTATGCTGATACTTATAAAAAGCCTTCATAG  650

seq1  AATAATGTTAAATAGTAAATTGCTTTATCCAAGAATACATTTATGAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTTAAATAGTAAATTGCTTTATCCAAGAATACATTTATGAATTA  700

seq1  AAGTGAGCCTATAGCTTAAACATAAAGCAGATTAAATTGTGCAGGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGCCTATAGCTTAAACATAAAGCAGATTAAATTGTGCAGGAAAAT  750

seq1  GTCGGTAATCTTAAAAATAAACATATCATTATATTACTGAATGTACTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTAATCTTAAAAATAAACATATCATTATATTACTGAATGTACTTCT  800

seq1  GGGTGTGAGGCTGTGGGTTCTGTTAAATTTGAGTGGGCAGGTGGGGAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGAGGCTGTGGGTTCTGTTAAATTTGAGTGGGCAGGTGGGGAGGG  850

seq1  GATAGGGGG  859
      |||||||||
seq2  GATAGGGGG  859