BAC Information

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BAC

Clone NameB6Ng01-228H04
Chromosome17 (Build37)
Map Location 83,723,349 - 83,852,941
singlet/doubletdoublet
Overlap geneEml4
Upstream geneLOC668836, EG433141, EG625514, LOC100043711, LOC100043900, AW548124, EG545226
Downstream geneCox7a2l, Kcng3, Mta3, Haao, Zfp36l2, Thada
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228H04.bB6Ng01-228H04.g
ACCGA041858GA041859
length1,1681,092
definitionB6Ng01-228H04.b B6Ng01-228H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,723,349 - 83,724,504)(83,851,857 - 83,852,941)
sequence
gaattctcttacaaggtctgttctggtgacagaatgggacaaggaattag
gccacatgcatgccttgtaatgagttcactgctggagcttaggcaaatac
aaggagagatgtccaaggctggccctccttacaggctcagtcacacgggc
cttttgaccacctggggctgcaggaagctgcctcaccgtgcttccagcgc
ttcagttacacaaccgtgaccgtgtgtctcccaggtcaccctagccgaga
ggtccaatgtggtcatgagtcataaccacttcagcgttttctcctagact
ccagtcctgttgatttacactttagatattccgtcctccctccctggggg
tccttgggtcctgggtggtaggcagttagtgctctcccgtgtcactccgc
gttgccacgcatcccacccactctaggcgccaccgcagctgctcctgttt
ctgcttttcctgaagtcagccccgctgtcattacggctgctttttctggg
atccttcaaattgtggagagagttcttttcctgtgattatagctctttct
tccaattttgactagtctggcgtctctgtgattatagttcattaggattc
ccaaagctagagagagaacttttttaacgctatcttgtttgtatttttta
aaataacacttattatactttttttcccagagagctattaaaaaaaaaaa
aaaaccctcagtagtggttctcagtctcatggtctcaatagcccttagca
gcattttcagaaataaaagtaatatacacgttgggtaaatactaaaacag
tagacaaaagggggtaggtaaagagaatcaaggtttcctcatttttcaat
atactccaaaagcatatctgtagtgactggttttttatatattgttatta
ataatagtttgttatgtccttcttaaaaatttacaaggaggattttgcta
tattcatggttctgctatgcattttccatccaaaataccacgcatcaaag
atcctccttcccttcctttaatgaacttgtctttcttggaggagaacgga
ctttccacgggagaattcgctcagcattcacttcccgacgctcagcatcg
cttcagggccgcttcagcatcatttccaaggctgctcagcatcattcagg
ggaccctaccggttcctt

gaattctcctttctaatctgctgagaaacaaaagaaatgacttcatccaa
accaagtccgtgtcgcttactcagggcagggctgtagcagtcaagggagg
ctaatgagacatgaggacagccagcctgtgggagataatgccttacagaa
ttcgttaccaggttcacaatggaagccagagccttgtttaaacatggcaa
aagtcaacaaaatagccttagctcttgtggaaaaacgggaagaaaaaaaa
aagatttaaaaaccactcatttttaaaaattgcatagcaactgatgactg
ggtaagtaagtagaacagggctgtgcctagatgactgaacactaggtcaa
ggggaggtaagggacaacaagtctcgaaggatggaccttaggaacttgcc
aagttaaactgccagttatcgtcagtcatggtagagcacacctataatcc
taggaggcagtttgggctacacagtaagttctagaccagcctggcctata
tagcgaaaaatgttagaaaacaaaaagccaaataaaaaactagttatcta
aagccacacattttactttattttgagagatggggaaagctaattggtgc
acggctccttcctagtagaccccgacaaagagcataagtggatatagcaa
gcattactgactgcactcttaaaaggagcacactttatgtcatgtgaacg
atgtatcaacaaggctcttactgagataacttacttttctattagagctg
tcattaagtttgcaaaattagctgaaatttaacaagggtttggcatcact
aaaatgtcttcagccgtagctgaccgtgagagctgcggtgcgtccctggt
agaaaggcgcaatggacctactgctcccatctactgcctccagctaaaca
cacccacctcttggagcaacacagtatgatcagtggatgtctgtctacac
aatttaatccatctttgctgactgcaccccagttgcccaggagagaaagg
acattctaaaaaaaatggtgattttctgaggcacttgccgaagttcctta
agtcaggaccgaaggagaaaagagtgttaatacagtgagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_83723349_83724504
seq2: B6Ng01-228H04.b_47_1214

seq1  GAATTCTCTTACAAGGTCTGTTCTGGTGACAGAATGGGACAAGGAATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTACAAGGTCTGTTCTGGTGACAGAATGGGACAAGGAATTAG  50

seq1  GCCACATGCATGCCTTGTAATGAGTTCACTGCTGGAGCTTAGGCAAATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATGCATGCCTTGTAATGAGTTCACTGCTGGAGCTTAGGCAAATAC  100

seq1  AAGGAGAGATGTCCAAGGCTGGCCCTCCTTACAGGCTCAGTCACACGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGATGTCCAAGGCTGGCCCTCCTTACAGGCTCAGTCACACGGGC  150

seq1  CTTTTGACCACCTGGGGCTGCAGGAAGCTGCCTCACCGTGCTTCCAGCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGACCACCTGGGGCTGCAGGAAGCTGCCTCACCGTGCTTCCAGCGC  200

seq1  TTCAGTTACACAACCGTGACCGTGTGTCTCCCAGGTCACCCTAGCCGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTACACAACCGTGACCGTGTGTCTCCCAGGTCACCCTAGCCGAGA  250

seq1  GGTCCAATGTGGTCATGAGTCATAACCACTTCAGCGTTTTCTCCTAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAATGTGGTCATGAGTCATAACCACTTCAGCGTTTTCTCCTAGACT  300

seq1  CCAGTCCTGTTGATTTACACTTTAGATATTCCGTCCTCCCTCCCTGGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCTGTTGATTTACACTTTAGATATTCCGTCCTCCCTCCCTGGGGG  350

seq1  TCCTTGGGTCCTGGGTGGTAGGCAGTTAGTGCTCTCCCGTGTCACTCCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGGTCCTGGGTGGTAGGCAGTTAGTGCTCTCCCGTGTCACTCCGC  400

seq1  GTTGCCACGCATCCCACCCACTCTAGGCGCCACCGCAGCTGCTCCTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCACGCATCCCACCCACTCTAGGCGCCACCGCAGCTGCTCCTGTTT  450

seq1  CTGCTTTTCCTGAAGTCAGCCCCGCTGTCATTACGGCTGCTTTTTCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTCCTGAAGTCAGCCCCGCTGTCATTACGGCTGCTTTTTCTGGG  500

seq1  ATCCTTCAAATTGTGGAGAGAGTTCTTTTCCTGTGATTATAGCTCTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCAAATTGTGGAGAGAGTTCTTTTCCTGTGATTATAGCTCTTTCT  550

seq1  TCCAATTTTGACTAGTCTGGCGTCTCTGTGATTATAGTTCATTAGGATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTTTGACTAGTCTGGCGTCTCTGTGATTATAGTTCATTAGGATTC  600

seq1  CCAAAGCTAGAGAGAGAACTTTTTTAACGCTATCTTGTTTGTATTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCTAGAGAGAGAACTTTTTTAACGCTATCTTGTTTGTATTTTTTA  650

seq1  AAATAACACTTATTATACTTTTTTTCCCAGAGAGCTATTAAAAAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACACTTATTATACTTTTTTTCCCAGAGAGCTATTAAAAAAAAAAA  700

seq1  AAAACCCTCAGTAGTGGTTCTCAGTCTCATGGTCTCAATAGCCCTTAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTCAGTAGTGGTTCTCAGTCTCATGGTCTCAATAGCCCTTAGCA  750

seq1  GCATTTTCAGAAATAAAAGTAATATACACGTTGGGTAAATACTAAAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCAGAAATAAAAGTAATATACACGTTGGGTAAATACTAAAACAG  800

seq1  TAGACAAAAGGGGGTAGGTAAAGAGAATCAAGGTTTCCTCA-TTTTCAAT  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAGACAAAAGGGGGTAGGTAAAGAGAATCAAGGTTTCCTCATTTTTCAAT  850

seq1  ATACTCCAAAAGCATATCTGTAGTGACTGG-TTTTTATATATTGTTATTA  898
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATACTCCAAAAGCATATCTGTAGTGACTGGTTTTTTATATATTGTTATTA  900

seq1  AT-ATAGTTTGTTATGTCC-TCTTAAAAATTTAC-AGGA-GATTTTGCTA  944
      || |||||||||||||||| |||||||||||||| |||| ||||||||||
seq2  ATAATAGTTTGTTATGTCCTTCTTAAAAATTTACAAGGAGGATTTTGCTA  950

seq1  TATTCAT-GTTCTGCATTGCATTTTCCATCCAAAATACCACGCATCAAAG  993
      ||||||| |||||||  |||||||||||||||||||||||||||||||||
seq2  TATTCATGGTTCTGCTATGCATTTTCCATCCAAAATACCACGCATCAAAG  1000

seq1  AT-CTCC-TCCCTTCCTTTAATGACCTTGTCTTTCTTGGAGGAGAACGGA  1041
      || |||| |||||||||||||||| |||||||||||||||||||||||||
seq2  ATCCTCCTTCCCTTCCTTTAATGAACTTGTCTTTCTTGGAGGAGAACGGA  1050

seq1  CTTTCCACGGGAGAA-TCGCTCAGCA-TCACTCCCGGACCGCTCAGCATC  1089
      ||||||||||||||| |||||||||| ||||| || || |||||||||||
seq2  CTTTCCACGGGAGAATTCGCTCAGCATTCACTTCCCGA-CGCTCAGCATC  1099

seq1  GCTCCGGGGCCGC-TCAGCATCA-TTCCAGGGCTGCTCAGCATCATTCCA  1137
      ||| | ||||||| ||||||||| ||||| ||||||||||||||||||  
seq2  GCTTCAGGGCCGCTTCAGCATCATTTCCAAGGCTGCTCAGCATCATTCAG  1149

seq1  GGGGCCCTAACGGTCCCTT  1156
      ||| ||||| |||| ||||
seq2  GGGACCCTACCGGTTCCTT  1168


seq1: chr17_83851857_83852941
seq2: B6Ng01-228H04.g_69_1160 (reverse)

seq1  CTGCTCACTG--TTTACACTCTTTTCCTTCCTCTGTCCTTGACTTAAGGG  48
      ||||||||||  || |||||||||| || | || |||| |||||||||| 
seq2  CTGCTCACTGTATTAACACTCTTTT-CTCCTTCGGTCC-TGACTTAAGGA  48

seq1  AC-TCGGC-AGTG-CTCAGAAAATTCACA-TTTTTTTAG-ATGTCCTTTC  93
      || ||||| |||| ||||||||||   || ||||||||| ||||||||||
seq2  ACTTCGGCAAGTGCCTCAGAAAATCACCATTTTTTTTAGAATGTCCTTTC  98

seq1  TCTCCTGGGCACCT-GGGTGCAGTCAGCAAAGATGGA-TAAATTGTGTAG  141
      ||||||||||| || |||||||||||||||||||||| ||||||||||||
seq2  TCTCCTGGGCAACTGGGGTGCAGTCAGCAAAGATGGATTAAATTGTGTAG  148

seq1  ACAGACATCCACTGATCATACTGTGTTGCT-CAAGAGGTGGGTTGTGTTT  190
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  ACAGACATCCACTGATCATACTGTGTTGCTCCAAGAGGTGGG-TGTGTTT  197

seq1  AGCTGGAGGCAGTAGATGGGAGCAGTAGGTCCATTGCGCCTTTCTACCAG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGGCAGTAGATGGGAGCAGTAGGTCCATTGCGCCTTTCTACCAG  247

seq1  GGACGCACCGCAGCTCTCACGGTCAGCTACGGCTGAAGACATTTTAGTGA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCACCGCAGCTCTCACGGTCAGCTACGGCTGAAGACATTTTAGTGA  297

seq1  TGCCAAACCCTTGTT-AATTTCAGCTAATTTTGCAAACTTAATGACAGCT  339
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGCCAAACCCTTGTTAAATTTCAGCTAATTTTGCAAACTTAATGACAGCT  347

seq1  CTAATAGAAAAGTAAGTTAATCTCAGTAAGAGCCTTGTTGATACATCGTT  389
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTAATAGAAAAGTAAGTT-ATCTCAGTAAGAGCCTTGTTGATACATCGTT  396

seq1  CACATGACATAAAGTGTGCTCCTTTTAAGAGTGCAGTCAGTAATGCTTGC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGACATAAAGTGTGCTCCTTTTAAGAGTGCAGTCAGTAATGCTTGC  446

seq1  TATATCCACTTATGCTCTTTGTCGGGGTCTACTAGGAAGGAGCCGTGCAC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCACTTATGCTCTTTGTCGGGGTCTACTAGGAAGGAGCCGTGCAC  496

seq1  CAATTAGCTTTCCCCATCTCTCAAAATAAAGTAAAATGTGTGGCTTTAGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGCTTTCCCCATCTCTCAAAATAAAGTAAAATGTGTGGCTTTAGA  546

seq1  TAACTAGTTTTTTATTTGGCTTTTTGTTTTCTAACATTTTTCGCTATATA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGTTTTTTATTTGGCTTTTTGTTTTCTAACATTTTTCGCTATATA  596

seq1  GGCCAGGCTGGTCTAGAACTTACTGTGTAGCCCAAACTGCCTCCTAGGAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGCTGGTCTAGAACTTACTGTGTAGCCCAAACTGCCTCCTAGGAT  646

seq1  TATAGGTGTGCTCTACCATGACTGACGATAACTGGCAGTTTAACTTGGCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTGTGCTCTACCATGACTGACGATAACTGGCAGTTTAACTTGGCA  696

seq1  AGTTCCTAAGGTCCATCCTTCGAGACTTGTTGTCCCTTACCTCCCCTTGA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTAAGGTCCATCCTTCGAGACTTGTTGTCCCTTACCTCCCCTTGA  746

seq1  CCTAGTGTTCAGTCATCTAGGCACAGCCCTGTTCTACTTACTTACCCAGT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGTTCAGTCATCTAGGCACAGCCCTGTTCTACTTACTTACCCAGT  796

seq1  CATCAGTTGCTATGCAATTTTTAAAAATGAGTGGTTTTTAAATCTTTTTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTTGCTATGCAATTTTTAAAAATGAGTGGTTTTTAAATCTTTTTT  846

seq1  TTTTCTTCCCGTTTTTCCACAAGAGCTAAGGCTATTTTGTTGACTTTTGC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCCGTTTTTCCACAAGAGCTAAGGCTATTTTGTTGACTTTTGC  896

seq1  CATGTTTAAACAAGGCTCTGGCTTCCATTGTGAACCTGGTAACGAATTCT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTAAACAAGGCTCTGGCTTCCATTGTGAACCTGGTAACGAATTCT  946

seq1  GTAAGGCATTATCTCCCACAGGCTGGCTGTCCTCATGTCTCATTAGCCTC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGCATTATCTCCCACAGGCTGGCTGTCCTCATGTCTCATTAGCCTC  996

seq1  CCTTGACTGCTACAGCCCTGCCCTGAGTAAGCGACACGGACTTGGTTTGG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACTGCTACAGCCCTGCCCTGAGTAAGCGACACGGACTTGGTTTGG  1046

seq1  ATGAAGTCATTTCTTTTGTTTCTCAGCAGATTAGAAAGGAGAATTC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTCATTTCTTTTGTTTCTCAGCAGATTAGAAAGGAGAATTC  1092


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