BAC Information

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BAC

Clone NameB6Ng01-229B01
Chromosome17 (Build37)
Map Location 32,858,150 - 33,028,872
singlet/doubletdoublet
Overlap geneLOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107
Upstream geneSnf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15
Downstream geneCyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229B01.bB6Ng01-229B01.g
ACCGA042312GA042313
length952958
definitionB6Ng01-229B01.b B6Ng01-229B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,027,927 - 33,028,872)(32,858,150 - 32,859,106)
sequence
gaattctcttgctctgaccccattcttaggaggaagaattaggaacggct
cactgtgaattgttacaagcaagagaacaaacttcgcttgcatgcacaca
gtcacccagacagggctagaacgcaggggtctagagtgaaatctgcttgc
taatttgcctaataaaacttgtatgccctgtcactagcgctccaggacct
gagccaagggctcgctggcctatccggagaaaggttaggctcgctggcct
atcagggtaaaggttattactttagtgtctgaagtgtccaatgagaagta
cgcttcttgcatgaggggctttgtctgaccgaggtctgtttccttaaacc
ccctccccagccccccaaattaggcatgtttgtgttatttggaagtatgt
cctagatgccaggcctagatatcagagtcgccttcactgacagcaggagc
cgcaggagcacaccaggacactccggggctggaaatggtacgttcggcct
gtgacttagatgtgggcaggatgctgcggcagcagacggagaccgcaatg
ggagcaggtcttgcaagacagctgagtctgcagcggagtctcatctggct
ccgctgggtcttgccgctccgattccgctgggtggagctggtccatcaga
cagagcggtggtctcttcctctctgagcgctcagcgctgcagcgtctggg
gtcagctgggcttctccaccaaggtctcgggaggatcctgaggagccaac
tctgggagttggattgggactcttctacgggggatgaaggtggagctgcg
tggatgatgaaggttaggacacgagtcctataactgcttcgtcctcccct
tgaaaatctcgacacaccctatgcagtgtctcagggcgcagctacccaga
ggacttttgttgattctcagtgttgaagagagagagattgggggtggggg
gt
gaattcagtagagaaaagcagttgtcttaaggtggtagcaaacacaaggc
aacagtgctgagctataccctaaatgagggaatcttctagagagatctta
gatgaaagattgagtattcaaaccaagatgaccaaaacagtgcatggatg
gggagttttggtccttttctttagtgtctcaccagaaatgtagaagcata
ttttcttttctatttctatgtaataagttgctatttcctatgaggtaggg
tcccatgtgattcagattggccttgagaaatgcctacatagctgtagatg
actttgaactcctgatcttcctgcatctgcttcctgtgtattgggatcag
aaggatatcacatcgtctggcatctcttgattcaatgcaaaaatattcaa
gtcagtccatatcagatgaatatctcatgtttgtatcagtagaggttttt
gctagaagatagaattatttgaaaagcaaccagtccacttgaagccatca
ggtttttttctttggggcatggaggaagttcaacctgatcactgtggggt
atgtgagcgaagaaagctatatatgtttcctgatgctgttctgaaaagca
catgtacaaagctacagagtaatgtactaattttaggtaggaaaactatt
ctgtatgatactgtattcacggatacatatttagttttaattttattatt
acttttccctcgtcttttatctttattatcagaatcttatcatgggttcc
aaattttctgatctcagaagggcttttcaactcacatcctctttcacttg
aaattttgccatcccccaagcctcagaccagagggctgaggctggccctg
cctctcctttgctctcaatccttcctccctggcaacttggttcctgagca
acctatgtaccacacttgaatctctctctctcttcaatctctccctcccc
cttcccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_33027927_33028872
seq2: B6Ng01-229B01.b_44_995 (reverse)

seq1  ACCCCCCACCCC--ATCTCTCTCTC-TCAACACTGAGAATCA--CAAAGT  45
      ||||||||||||  ||||||||||| ||||||||||||||||   |||||
seq2  ACCCCCCACCCCCAATCTCTCTCTCTTCAACACTGAGAATCAACAAAAGT  50

seq1  CCTCTGGGTAGCTGCGCCCTGAGACACTGCATAGGGTGTGTCGAGATTTT  95
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGGTAGCTGCGCCCTGAGACACTGCATAGGGTGTGTCGAGATTTT  100

seq1  C-AGGGGAGGACGAAGCAGTTATAGGACTCGTGTCCTAACCTTCATCATC  144
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGAGGACGAAGCAGTTATAGGACTCGTGTCCTAACCTTCATCATC  150

seq1  CACGCAGCTCCACCTTCATCCCCCGTAGAAGAGTCCCAATCCAACTCCCA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCAGCTCCACCTTCATCCCCCGTAGAAGAGTCCCAATCCAACTCCCA  200

seq1  GAGTTGGCTCCTCAGGATCCTCCCGAGACCTTGGTGGAGAAGCCCAGCTG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGCTCCTCAGGATCCTCCCGAGACCTTGGTGGAGAAGCCCAGCTG  250

seq1  ACCCCAGACGCTGCAGCGCTGAGCGCTCAGAGAGGAAGAGACCACCGCTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGACGCTGCAGCGCTGAGCGCTCAGAGAGGAAGAGACCACCGCTC  300

seq1  TGTCTGATGGACCAGCTCCACCCAGCGGAATCGGAGCGGCAAGACCCAGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGATGGACCAGCTCCACCCAGCGGAATCGGAGCGGCAAGACCCAGC  350

seq1  GGAGCCAGATGAGACTCCGCTGCAGACTCAGCTGTCTTGCAAGACCTGCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGATGAGACTCCGCTGCAGACTCAGCTGTCTTGCAAGACCTGCT  400

seq1  CCCATTGCGGTCTCCGTCTGCTGCCGCAGCATCCTGCCCACATCTAAGTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGCGGTCTCCGTCTGCTGCCGCAGCATCCTGCCCACATCTAAGTC  450

seq1  ACAGGCCGAACGTACCATTTCCAGCCCCGGAGTGTCCTGGTGTGCTCCTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCGAACGTACCATTTCCAGCCCCGGAGTGTCCTGGTGTGCTCCTG  500

seq1  CGGCTCCTGCTGTCAGTGAAGGCGACTCTGATATCTAGGCCTGGCATCTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCCTGCTGTCAGTGAAGGCGACTCTGATATCTAGGCCTGGCATCTA  550

seq1  GGACATACTTCCAAATAACACAAACATGCCTAATTTGGGGGGCTGGGGAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATACTTCCAAATAACACAAACATGCCTAATTTGGGGGGCTGGGGAG  600

seq1  GGGGTTTAAGGAAACAGACCTCGGTCAGACAAAGCCCCTCATGCAAGAAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTAAGGAAACAGACCTCGGTCAGACAAAGCCCCTCATGCAAGAAG  650

seq1  CGTACTTCTCATTGGACACTTCAGACACTAAAGTAATAACCTTTACCCTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACTTCTCATTGGACACTTCAGACACTAAAGTAATAACCTTTACCCTG  700

seq1  ATAGGCCAGCGAGCCTAACCTTTCTCCGGATAGGCCAGCGAGCCCTTGGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCCAGCGAGCCTAACCTTTCTCCGGATAGGCCAGCGAGCCCTTGGC  750

seq1  TCAGGTCCTGGAGCGCTAGTGACAGGGCATACAAGTTTTATTAGGCAAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCCTGGAGCGCTAGTGACAGGGCATACAAGTTTTATTAGGCAAAT  800

seq1  TAGCAAGCAGATTTCACTCTAGACCCCTGCGTTCTAGCCCTGTCTGGGTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGCAGATTTCACTCTAGACCCCTGCGTTCTAGCCCTGTCTGGGTG  850

seq1  ACTGTGTGCATGCAAGCGAAGTTTGTTCTCTTGCTTGTAACAATTCACAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGCATGCAAGCGAAGTTTGTTCTCTTGCTTGTAACAATTCACAG  900

seq1  TGAGCCGTTCCTAATTCTTCCTCCTAAGAATGGGGTCAGAGCAAGAGAAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCGTTCCTAATTCTTCCTCCTAAGAATGGGGTCAGAGCAAGAGAAT  950

seq1  TC  946
      ||
seq2  TC  952

seq1: chr17_32858150_32859106
seq2: B6Ng01-229B01.g_69_1026

seq1  GAATTCAGTAGAGAAAAGCAGTTGTCTTAAGGTGGTAGCAAACACAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGAGAAAAGCAGTTGTCTTAAGGTGGTAGCAAACACAAGGC  50

seq1  AACAGTGCTGAGCTATACCCTAAATGAGGGAATCTTCTAGAGAGATCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGCTGAGCTATACCCTAAATGAGGGAATCTTCTAGAGAGATCTTA  100

seq1  GATGAAAGATTGAGTATTCAAACCAAGATGACCAAAACAGTGCATGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAGATTGAGTATTCAAACCAAGATGACCAAAACAGTGCATGGATG  150

seq1  GGGAGTTTTGGTCCTTTTCTTTAGTGTCTCACCAGAAATGTAGAAGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTTTGGTCCTTTTCTTTAGTGTCTCACCAGAAATGTAGAAGCATA  200

seq1  TTTTCTTTTCTATTTCTATGTAATAAGTTGCTATTTCCTATGAGGTAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTATTTCTATGTAATAAGTTGCTATTTCCTATGAGGTAGGG  250

seq1  TCCCATGTGATTCAGATTGGCCTTGAGAAATGCCTACATAGCTGTAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGTGATTCAGATTGGCCTTGAGAAATGCCTACATAGCTGTAGATG  300

seq1  ACTTTGAACTCCTGATCTTCCTGCATCTGCTTCCTGTGTATTGGGATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAACTCCTGATCTTCCTGCATCTGCTTCCTGTGTATTGGGATCAG  350

seq1  AAGGATATCACATCGTCTGGCATCTCTTGATTCAATGCAAAAATATTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATCACATCGTCTGGCATCTCTTGATTCAATGCAAAAATATTCAA  400

seq1  GTCAGTCCATATCAGATGAATATCTCATGTTTGTATCAGTAGAGGTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCCATATCAGATGAATATCTCATGTTTGTATCAGTAGAGGTTTTT  450

seq1  GCTAGAAGATAGAATTATTTGAAAAGCAACCAGTCCACTTGAAGCCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAGATAGAATTATTTGAAAAGCAACCAGTCCACTTGAAGCCATCA  500

seq1  GGTTTTTTTCTTTGGGGCATGGAGGAAGTTCAACCTGATCACTGTGGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTCTTTGGGGCATGGAGGAAGTTCAACCTGATCACTGTGGGGT  550

seq1  ATGTGAGCGAAGAAAGCTATATATGTTTCCTGATGCTGTTCTGAAAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGCGAAGAAAGCTATATATGTTTCCTGATGCTGTTCTGAAAAGCA  600

seq1  CATGTACAAAGCTACAGAGTAATGTACTAATTTTAGGTAGGAAAACTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACAAAGCTACAGAGTAATGTACTAATTTTAGGTAGGAAAACTATT  650

seq1  CTGTATGATACTGTATTCACGGATACATATTTAGTTTTAATTTTATTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGATACTGTATTCACGGATACATATTTAGTTTTAATTTTATTATT  700

seq1  ACTTTTCCCTCGTCTTTTATCTTTATTATCAGAATCTTATCATGGGTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCCCTCGTCTTTTATCTTTATTATCAGAATCTTATCATGGGTTCC  750

seq1  AAATTTTCTGATCTCAGAAGGGCTTTTCAACTCACATCCTCTTTCACTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTGATCTCAGAAGGGCTTTTCAACTCACATCCTCTTTCACTTG  800

seq1  -AATTTTGCCAT-CCCCAAGCCTCAGGACCAGAGGGCTGAGGCTGG-CCT  847
       ||||||||||| |||||||||||| |||||||||||||||||||| |||
seq2  AAATTTTGCCATCCCCCAAGCCTCA-GACCAGAGGGCTGAGGCTGGCCCT  849

seq1  GCCTCTTCCTTTGCTCTCAATCCTTCCTCCCTGGCAACTTGGTTCCTGAG  897
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTC-TCCTTTGCTCTCAATCCTTCCTCCCTGGCAACTTGGTTCCTGAG  898

seq1  CAACCTATGTACCACACTTGAATCTCTCTCTCTCTTCCATCTCTCCCTCC  947
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAACCTATGTACCACACTTGAATCTCTCTCTCTCTTCAATCTCTCCCTCC  948

seq1  CCCTCCCCCT  957
      |||| |||||
seq2  CCCTTCCCCT  958