BAC Information

Click to search

BAC

Clone NameB6Ng01-229B06
Chromosome17 (Build37)
Map Location 69,647,057 - 69,781,125
singlet/doubletdoublet
Overlap geneZfp161, C030034I22Rik, A930029G22Rik
Upstream geneD930040M24Rik, EG622645, Epb4.1l3, 2410021H03Rik
Downstream geneA330050F15Rik, LOC100043623, LOC668720, LOC673535, LOC100043630, LOC623112, LOC623143, Dlgap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229B06.bB6Ng01-229B06.g
ACCGA042322GA042323
length1,1001,076
definitionB6Ng01-229B06.b B6Ng01-229B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,780,025 - 69,781,125)(69,647,057 - 69,647,845)
sequence
gaattcctgccctaagctccctttaggatggactgtaagctgtaagatga
gagaaaccctttcttctctgagtgattttagttgtggtatttattgcaga
agcaaacaatgaaaagaaagcaagatggcttggatcatcatgaaggagat
ttcacactgcaaggaagaaagagatatgtttggtttgcgaattctgtggc
ataattgtaacccaaaccatgggagtcaatcacttttaaccactgtgtac
tgacaaccagactggtcataaccctagacctttcagtaagaagagagcct
cataagtaagggttgggtgagatgacatatgaaagcaggtttgccatatt
tagaactaatatgttttttttttaaatcttacccccatttccacagttct
ctgtatccttgctctgccccagtgagtagcagccaaagtctaaaacagat
cccaaacttggcactgttttttttttttttagcgtcttaaagttacaatt
cactctctattcctggcaaccttgctcaaataaacccacattctatctgt
ctgtccatccatccatccatccatccatccatccatctatctctactaac
ctatctttttaatgttgtgtgagtgggttttttgcctgcttgcatgtctt
tgcaccatgtgccccacaatggtcaagaaatgaccctatttcccctggaa
atggagttagagatgggtgttagcggtgtgtgggtgctaggaattgaacc
caggtcctctacactaaacacaaaaacgtgtgctcttaactgataagcca
tctctctggctctcctttccaacattttcttccttcctacctctattact
gcagtactattaaaatggcaatttttagtctcctatttttatatctgtta
tttgaatgctttgtctgcacacgttcacaacttactagctgctttcagaa
tacagagcatagcagacaatggtgaaaattaatagtccatgaatggtgtt
tccataaaggtttattacgatgacaggtggagaagtcatgttaacccagt
gaagacgatactgaatggattttctgatttcctttgggaactcagttgtg


gaattcagtaagaaggttgcctattcagtgacattcagaattgcctctag
tattgtaagagagatagtgaaagaaatcaggcattactatctactacata
gagttagaaatcttagggcaagcttagcaaagtaagtttagaattcttat
tatagtcatgtatggtagactacattacttattagtagaaagtccccctc
actatcacttagaataaaagccgagccactcacatatacaggaatttaca
atcgtttaggaagtagattaggctgtgatttgaggaggaactagaatatt
gcattattcatgagaaggttcgctagagtggaactcactaattaaagcca
tgacttgggcatgaaagcccttgccctaggagtgtaaagatctcacacct
ggcttctaagactatagctgaccttagatagggctgactttgtttcagtt
gttttattgcccagttcctgccagtctttgtgtttgttttcctctgtttt
gtgtaagagtcattaagcatcccataacctcattgtaccttgccaatgtg
tcacctaacttccctaatttcttctgtataaaaagtttgatgctcgattt
gacaaattacattcagatacaacacactcccacatgtctgtatttgtttg
tcatttctggccaactctttgcccacctgtccagaaccccgaattctccc
acggattgagggggccccactgaggctggtccacagcaaatcatccacac
agcagcgcccacacagcagcatccacacagccatcatctacacagcagca
tccacacagccatcatccacatagcatcatccacaaagcagcatccacac
agcagcacccacacagcagcacccacacagcagcacccacacagcagcac
ccacacaggcattcatccacacagcagcattccacacagcagcacccaca
caggcagcacccacataggccatcatccacatagcaatcatccacacagc
agcattccacacaagccatcatccacattagcatcatccacaacagcagc
atccctcaaaagcagcacccaaacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_69780025_69781125
seq2: B6Ng01-229B06.b_50_1149 (reverse)

seq1  CACAACTGAGTCTCCAAA-GAAATCAGAAAATTCCATTTCAGTAATCTGT  49
      |||||||||||  ||||| |||||||||||| |||| |||||| ||| ||
seq2  CACAACTGAGTTCCCAAAGGAAATCAGAAAA-TCCA-TTCAGT-ATC-GT  46

seq1  CTCCACTGGGGTTTAACATGAC-TCTCCACCTGTCATCGTAAATAAACTT  98
      || |||||||  |||||||||| ||||||||||||||||| ||||||| |
seq2  CTTCACTGGG--TTAACATGACTTCTCCACCTGTCATCGT-AATAAACCT  93

seq1  TTATTGAAACACCA-TCAT-GACTATTAATTTTCA-CATTGTCTGCTATG  145
      |||| ||||||||| |||| ||||||||||||||| ||||||||||||||
seq2  TTATGGAAACACCATTCATGGACTATTAATTTTCACCATTGTCTGCTATG  143

seq1  CTTCTGTATTCTGAAAGCAGCTAGT-AGTTGTGAACGTGTAGCAGACAAA  194
      | ||||||||||||||||||||||| |||||||||||||| |||||||||
seq2  C-TCTGTATTCTGAAAGCAGCTAGTAAGTTGTGAACGTGT-GCAGACAAA  191

seq1  GCATACAAATAAACAGATATAAAAATAGGAGACTAAAAA-TGCCATTTTA  243
      |||| ||||| |||||||||||||||||||||||||||| ||||||||||
seq2  GCATTCAAAT-AACAGATATAAAAATAGGAGACTAAAAATTGCCATTTTA  240

seq1  ATAGTACTGCAGTAATAGAGGTAGGAAGG-AGAAAATGTTGGAAAGGAGA  292
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATAGTACTGCAGTAATAGAGGTAGGAAGGAAGAAAATGTTGGAAAGGAGA  290

seq1  GCCAGAGAGATGGCTTATCAGTTAAGAGCACACGTTTTTGTG-TTAGTGT  341
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCCAGAGAGATGGCTTATCAGTTAAGAGCACACGTTTTTGTGTTTAGTGT  340

seq1  AGAGGACCTGGGTTCAATTCCTAGCACCCACACACCGCTAACACCCATCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCTGGGTTCAATTCCTAGCACCCACACACCGCTAACACCCATCT  390

seq1  CTAACTCCATTTCCAGGGGAAATAGGGTCATTTCTTGACCATTGTGGGGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCCATTTCCAGGGGAAATAGGGTCATTTCTTGACCATTGTGGGGC  440

seq1  ACATGGTGCAAAGACATGCAAGCAGGCAAAAAACCCACTCACACAACATT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGCAAAGACATGCAAGCAGGCAAAAAACCCACTCACACAACATT  490

seq1  AAAAAGATAGGTTAGTAGAGATAGATGGATGGATGGATGGATGGATGGAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATAGGTTAGTAGAGATAGATGGATGGATGGATGGATGGATGGAT  540

seq1  GGATGGACAGACAGATAGAATGTGGGTTTATTTGAGCAAGGTTGCCAGGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGACAGACAGATAGAATGTGGGTTTATTTGAGCAAGGTTGCCAGGA  590

seq1  ATAGAGAGTGAATTGTAACTTTAAGACGCTAAAAAAAAAAAAAACAGTGC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAGTGAATTGTAACTTTAAGACGCTAAAAAAAAAAAAAACAGTGC  640

seq1  CAAGTTTGGGATCTGTTTTAGACTTTGGCTGCTACTCACTGGGGCAGAGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTGGGATCTGTTTTAGACTTTGGCTGCTACTCACTGGGGCAGAGC  690

seq1  AAGGATACAGAGAACTGTGGAAATGGGGGTAAGATTTAAAAAAAAAACAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATACAGAGAACTGTGGAAATGGGGGTAAGATTTAAAAAAAAAACAT  740

seq1  ATTAGTTCTAAATATGGCAAACCTGCTTTCATATGTCATCTCACCCAACC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTCTAAATATGGCAAACCTGCTTTCATATGTCATCTCACCCAACC  790

seq1  CTTACTTATGAGGCTCTCTTCTTACTGAAAGGTCTAGGGTTATGACCAGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTATGAGGCTCTCTTCTTACTGAAAGGTCTAGGGTTATGACCAGT  840

seq1  CTGGTTGTCAGTACACAGTGGTTAAAAGTGATTGACTCCCATGGTTTGGG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGTCAGTACACAGTGGTTAAAAGTGATTGACTCCCATGGTTTGGG  890

seq1  TTACAATTATGCCACAGAATTCGCAAACCAAACATATCTCTTTCTTCCTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATTATGCCACAGAATTCGCAAACCAAACATATCTCTTTCTTCCTT  940

seq1  GCAGTGTGAAATCTCCTTCATGATGATCCAAGCCATCTTGCTTTCTTTTC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTGAAATCTCCTTCATGATGATCCAAGCCATCTTGCTTTCTTTTC  990

seq1  ATTGTTTGCTTCTGCAATAAATACCACAACTAAAATCACTCAGAGAAGAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGCTTCTGCAATAAATACCACAACTAAAATCACTCAGAGAAGAA  1040

seq1  AGGGTTTCTCTCATCTTACAGCTTACAGTCCATCCTAAAGGGAGCTTAGG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTCTCATCTTACAGCTTACAGTCCATCCTAAAGGGAGCTTAGG  1090

seq1  GCAGGAATTC  1101
      ||||||||||
seq2  GCAGGAATTC  1100


seq1: chr17_69647057_69647845
seq2: B6Ng01-229B06.g_341_1142

seq1  GTGATTTGAGGAGGAACTAGAATATTGCATTATTCATGAGAAGGTTCGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTGAGGAGGAACTAGAATATTGCATTATTCATGAGAAGGTTCGCT  50

seq1  AGAGTGGAACTCACTAATTAAAGCCATGACTTGGGCATGAAAGCCCTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGAACTCACTAATTAAAGCCATGACTTGGGCATGAAAGCCCTTGC  100

seq1  CCTAGGAGTGTAAAGATCTCACACCTGGCTTCTAAGACTATAGCTGACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGAGTGTAAAGATCTCACACCTGGCTTCTAAGACTATAGCTGACCT  150

seq1  TAGATAGGGCTGACTTTGTTTCAGTTGTTTTATTGCCCAGTTCCTGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGGGCTGACTTTGTTTCAGTTGTTTTATTGCCCAGTTCCTGCCAG  200

seq1  TCTTTGTGTTTGTTTTCCTCTGTTTTGTGTAAGAGTCATTAAGCATCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGTTTGTTTTCCTCTGTTTTGTGTAAGAGTCATTAAGCATCCCA  250

seq1  TAACCTCATTGTACCTTGCCAATGTGTCACCTAACTTCCCTAATTTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCATTGTACCTTGCCAATGTGTCACCTAACTTCCCTAATTTCTTC  300

seq1  TGTATAAAAAGTTTGATGCTCGATTTGACAAATTACATTCAGATACAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAAAAGTTTGATGCTCGATTTGACAAATTACATTCAGATACAACA  350

seq1  CACTCCCACATGTCTGTATTTGTTTGTCATTTCTGGCCAACTCTTTGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCACATGTCTGTATTTGTTTGTCATTTCTGGCCAACTCTTTGCCC  400

seq1  ACCTGTCCAGAACCCCGAATTCTCCCACGGATTGAGGGGGCCCCACTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCCAGAACCCCGAATTCTCCCACGGATTGAGGGGGCCCCACTGAG  450

seq1  GCTGGTCCACAGC-AATCATCCACACAGCAGCGCCCACACAGCAGCATCC  499
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCCACAGCAAATCATCCACACAGCAGCGCCCACACAGCAGCATCC  500

seq1  ACACAGCCATCATCTACACAGCAGCATCCACACAGCCATCATCCACATAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCCATCATCTACACAGCAGCATCCACACAGCCATCATCCACATAG  550

seq1  CATCATCCACAAAGCAGCATCCACACAGCAGCACCCACACAGCAGCACCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCCACAAAGCAGCATCCACACAGCAGCACCCACACAGCAGCACCC  600

seq1  ACACAGCAGCACCCACACAGCAGCACCCACACA-GCA-TCATCCACACAG  647
      ||||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  ACACAGCAGCACCCACACAGCAGCACCCACACAGGCATTCATCCACACAG  650

seq1  CAGCA-TCCACACAGCAGCACCCACACA-GCAGCACCCACATA-GCCATC  694
      ||||| |||||||||||||||||||||| |||||||||||||| ||||||
seq2  CAGCATTCCACACAGCAGCACCCACACAGGCAGCACCCACATAGGCCATC  700

seq1  ATCCACATAGC-ATCATCCACACAGCAGCA-TCCACAC-AGCCATCATCC  741
      ||||||||||| |||||||||||||||||| ||||||| |||||||||||
seq2  ATCCACATAGCAATCATCCACACAGCAGCATTCCACACAAGCCATCATCC  750

seq1  ACA-TAGCATCATCCAC-ACAGCAGCATCC--ACACAGCAGCACCCACAC  787
      ||| ||||||||||||| ||||||||||||    | ||||||||||| ||
seq2  ACATTAGCATCATCCACAACAGCAGCATCCCTCAAAAGCAGCACCCAAAC  800

seq1  AG  789
      ||
seq2  AG  802


| Home | SequenceCutter | Blast | Download |