BAC Information

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BAC

Clone NameB6Ng01-229M12
Chromosome17 (Build37)
Map Location 22,159,780 - 22,292,997
singlet/doubletdoublet
Overlap geneLOC631010, EG665844, EG210853
Upstream geneZfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332
Downstream geneLOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229M12.bB6Ng01-229M12.g
ACCGA042820GA042821
length1,1661,146
definitionB6Ng01-229M12.b B6Ng01-229M12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,159,780 - 22,160,955)(22,291,826 - 22,292,997)
sequence
gaattcccacacagggatgagtggaaagggtatatagcagccctcccatg
cctgactgactagagaatagggactgactctgacagggcgtggccctttt
tccttcccccacttccccagggcccccccctttttttgttcccaacaatg
gcagaaattaaattcgaggatctttgcaattgccacaatgtctaaggaga
accatgttttcaaacaatagatgaggcaaatcctctactatagcattctc
atgtaaagctgagcatcctgtaaacagttttcatagctgatctggtttgc
atacctgtcacacgaatgccattgcacaactaattccctgaaagctgtgc
tggcatgcaaaaaccctgtatgagattaacgcagttcaaagctcagcatg
ggagaaagggatcatcagaccactacatgttatcaacagctcttggcttt
ggaagaaggaaaggaagttcttttcagagatgtactcatgtacatccacc
tagtatgtggatttagtactttaaaaattgtgaatatggagatgtgagga
agcattatgggagtgagtatatggatctgaggaagatgcagtgtatttga
tcaaagacaggatatatacataaatgagtatccacagaccataaaaacca
atacttatttatttcttcagtttggacacttgaaatcacttatccagact
ttacacttaccctcacactagcagagataccttcaaatttttcctcgtac
ttgttaccttgaatcattatgtatccttcccactctgtctcgggctgccc
tggatcctctctgcatagcctccccacatactctttgccagcctagggat
gctgtaccctcatgtctgaaccccaccctgggttcagaacccttcaaata
aaggttatatagactatattttccattggtataccatcacccccttctct
tcttgcctgcacactccccttccctgggctaaaaacagaaaaaaaggaga
acaaatatcttaacatttatgccagaattccactgtacccctaccccaat
aaaaaataccctaaacttacgaaaaatattggctcaaagaacaaccttca
tctgtgttctctcttagagaacttatgtaatctcagtgtatggaactaca
aaccagatacatgttc
gaattctttgctgtttccttattgaagaatctgtacactgacttgctagg
tgaatgcaggaagtttgatccctactgactctatgttcctcagctttttc
tgtttcttttcctgaaagataaattactagagaaccttgagtgcagacat
tgactatcagaaatgagattcttcatgcacattaattgagaatgttgttt
attattaaagatgtgtaacgtggagattccacacagaagattggtttcag
aatgaatcacaaaatatgagccaactatgatgagtagtgctcacatacga
gctataacatgttcttgactgtcagatatcgttcatcagcatctgtcatt
tcattatgtttcttgtaaaagaaaaacgtaggttgatattgagcaaatgt
ggagacaaatgcattaaacaggagaaagaatttcccatctgtgatttgaa
gggtgaatgttcagactttaactctaatgtgtgtgtgtgggtgcagcagg
tgcatagacagcatcaggaaacctgatatcaatggggtacctgtgagatc
ctggaactctggaccctctcccaattcggttaacagtttttgaacagata
atacagaaggaaactgcagaaatgaagtcaattgtactcctttcttctat
ttttttttaatttaactaagtatatgtattttaaaaaatttatatgtctg
accatggttgaacatttcattactggatccttttagcttgtaaatggtat
cacagctgaaggatagactccttcccttttttaaaacaaattcaaaggaa
aaaaaaaaaaccccacatgatcatctcattagatgctgaaaaaagcattt
aacaaaatgcaataccccattcatgttaaaagttttggaaagctcagtaa
ttcaaggcccattcctaaaataataaagcaatatacagcaaagtaatagc
caacatcagactaatggagagaacttgaggtgccaaactggatttttttc
cattttttattaggtatttatctcatttacatttcatgctatacaaaagt
ccccatactacttctactcctacacccactccccttttgaccctgcatac
ctgtactgggcaataagttggcaagtccatggtgctctctttgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_22159780_22160955
seq2: B6Ng01-229M12.b_44_1209

seq1  GAATTCCCACACAGGGATGAGTGGAAAGGGTATATAGCAGCCCTCCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACACAGGGATGAGTGGAAAGGGTATATAGCAGCCCTCCCATG  50

seq1  CCTGACTGACTAGAGAATAGGGACTGACTCTGACAGGGCGTGGCCCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTGACTAGAGAATAGGGACTGACTCTGACAGGGCGTGGCCCTTTT  100

seq1  TCCTTCCCCCACTTCCCCAGGGCCCCCCCCTTTTTTTGTTCCCAACAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCCCACTTCCCCAGGGCCCCCCCCTTTTTTTGTTCCCAACAATG  150

seq1  GCAGAAATTAAATTCGAGGATCTTTGCAATTGCCACAATGTCTAAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAATTAAATTCGAGGATCTTTGCAATTGCCACAATGTCTAAGGAGA  200

seq1  ACCATGTTTTCAAACAATAGATGAGGCAAATCCTCTACTATAGCATTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTTTCAAACAATAGATGAGGCAAATCCTCTACTATAGCATTCTC  250

seq1  ATGTAAAGCTGAGCATCCTGTAAACAGTTTTCATAGCTGATCTGGTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAGCTGAGCATCCTGTAAACAGTTTTCATAGCTGATCTGGTTTGC  300

seq1  ATACCTGTCACACGAATGCCATTGCACAACTAATTCCCTGAAAGCTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGTCACACGAATGCCATTGCACAACTAATTCCCTGAAAGCTGTGC  350

seq1  TGGCATGCAAAAACCCTGTATGAGATTAACGCAGTTCAAAGCTCAGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGCAAAAACCCTGTATGAGATTAACGCAGTTCAAAGCTCAGCATG  400

seq1  GGAGAAAGGGATCATCAGACCACTACATGTTATCAACAGCTCTTGGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGGGATCATCAGACCACTACATGTTATCAACAGCTCTTGGCTTT  450

seq1  GGAAGAAGGAAAGGAAGTTCTTTTCAGAGATGTACTCATGTACATCCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGGAAAGGAAGTTCTTTTCAGAGATGTACTCATGTACATCCACC  500

seq1  TAGTATGTGGATTTAGTACTTTAAAAATTGTGAATATGGAGATGTGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGTGGATTTAGTACTTTAAAAATTGTGAATATGGAGATGTGAGGA  550

seq1  AGCATTATGGGAGTGAGTATATGGATCTGAGGAAGATGCAGTGTATTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATGGGAGTGAGTATATGGATCTGAGGAAGATGCAGTGTATTTGA  600

seq1  TCAAAGACAGGATATATACATAAATGAGTATCCACAGACCATAAAAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACAGGATATATACATAAATGAGTATCCACAGACCATAAAAACCA  650

seq1  ATACTTATTTATTTCTTCAGTTTGGACACTTGAAATCACTTATCCAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATTTATTTCTTCAGTTTGGACACTTGAAATCACTTATCCAGACT  700

seq1  TTACACTTACCCTCACACTAGCAGAGATACCTTCAAATTTTTCCTCGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTACCCTCACACTAGCAGAGATACCTTCAAATTTTTCCTCGTAC  750

seq1  TTGTTACCTTGAATCATTATGTATCCTTCCCACTCTGTCTCGGGCTGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACCTTGAATCATTATGTATCCTTCCCACTCTGTCTCGGGCTGCCC  800

seq1  TGGATCCTCTCTGCATAGCCTCCCCACATACTCTTTGCCAGCCTAGGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCTCTCTGCATAGCCTCCCCACATACTCTTTGCCAGCCTAGGGAT  850

seq1  GCTGTACCCTCATGTCTGAACCCCACCCTGGGTTCAGAACCCTTCAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTACCCTCATGTCTGAACCCCACCCTGGGTTCAGAACCCTTCAAATA  900

seq1  AAGGTTATATAGACTATATTTTCCCATTGGTATACCATCACCCCCTTCTC  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGGTTATATAGACTATATTTT-CCATTGGTATACCATCACCCCCTTCTC  949

seq1  TTCTTGCCTGCACACTCCCTTCCCCTGGGCTAAAAACAGAAAAAAAAGAG  1000
      ||||||||||||||||||| | |||||||||||||||||||||||| |||
seq2  TTCTTGCCTGCACACTCCCCTTCCCTGGGCTAAAAACAGAAAAAAAGGAG  999

seq1  AACAAATATCTTAACATTTAATGCCCAGAA-TCCACTGTACCCCTACCCC  1049
      ||||||||||||||||||| ||| |||||| |||||||||||||||||||
seq2  AACAAATATCTTAACATTT-ATG-CCAGAATTCCACTGTACCCCTACCCC  1047

seq1  CATAAAAAATAACCCTAAAACTACGAAAAAATAATTTGGCTCAAAGAACA  1099
       ||||||||| ||||||||  |||| |||||||  |||||||||||||||
seq2  AATAAAAAAT-ACCCTAAACTTACG-AAAAATA--TTGGCTCAAAGAACA  1093

seq1  AACTTCATCTGTG-TCTC-CTAAGAAGGGAAATTTATGTAATTCTCAATG  1147
      | ||||||||||| |||| || |||     || |||||||| ||||| ||
seq2  ACCTTCATCTGTGTTCTCTCTTAGA----GAACTTATGTAA-TCTCAGTG  1138

seq1  TATGGAACTACAAAACCAGAGACATGTTC  1176
      ||||||||||| |||||||| ||||||||
seq2  TATGGAACTAC-AAACCAGATACATGTTC  1166

seq1: chr17_22291826_22292997
seq2: B6Ng01-229M12.g_68_1213 (reverse)

seq1  CTGCAAAGAGAAGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAG  50
      |||||||||| ||| |  ||||||||| ||||   |||  ||||||||| 
seq2  CTGCAAAGAG-AGCACCATGGACTTGCCAACT---TATTGCCCAGTACA-  45

seq1  GGGAATGCCAGGGTCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGG  100
       || ||| |||||||||||  |||||||||||  |||  ||||| |  | 
seq2  -GGTATG-CAGGGTCAAAA--GGGGAGTGGGT--GTA--GGAGTAGAAG-  86

seq1  GTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGATAAA  150
          |||| |||||||||| |||||||||  |||||||||||||||||||
seq2  --TAGTAT-GGGGACTTTT-GTATAGCAT--GAAATGTAAATGAGATAAA  130

seq1  TACCTAATAAAAAATGGGAAAAAAAATCAAGTTTGGCACCTTCAAGTTTC  200
      |||||||||||||||||  ||||||||| ||||||||||| ||||| |||
seq2  TACCTAATAAAAAATGG--AAAAAAATCCAGTTTGGCACC-TCAAG-TTC  176

seq1  TCTCCATTTAGTCTGATGTTGGCTATTACTTTGCTGTATATTGCTTTTAT  250
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTCCA-TTAGTCTGATGTTGGCTATTACTTTGCTGTATATTGC-TTTAT  224

seq1  TATTTTTAGGAATGGGCCTTGAATTACTGAGCTTTCCAAAACTTTTAACA  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-TTTTAGGAATGGGCCTTGAATTACTGAGCTTTCCAAAACTTTTAACA  273

seq1  TGAATGGGGTATTGCATTTTGTTAAATGCTTTTTTCAGCATCTAATGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGGGTATTGCATTTTGTTAAATGCTTTTTTCAGCATCTAATGAGA  323

seq1  TGATCATGTGGGG-TTTTTTTTTTTCCTTTGAATTTGTTTTAAAAAAGGG  399
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGATCATGTGGGGTTTTTTTTTTTTCCTTTGAATTTGTTTTAAAAAAGGG  373

seq1  AAGGAGTCTATCCTTCAGCTGTGATACCATTTACAAGCTAAAAGGATCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTCTATCCTTCAGCTGTGATACCATTTACAAGCTAAAAGGATCCA  423

seq1  GTAATGAAATGTTCAACCATGGTCAGACATATAAATTTTTTAAAATACAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAAATGTTCAACCATGGTCAGACATATAAATTTTTTAAAATACAT  473

seq1  ATACTTAGTTAAATTAAAAAAAAATAGAAGAAAGGAGTACAATTGACTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAGTTAAATTAAAAAAAAATAGAAGAAAGGAGTACAATTGACTTC  523

seq1  ATTTCTGCAGTTTCCTTCTGTATTATCTGTTCAAAAACTGTTAACCGAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCAGTTTCCTTCTGTATTATCTGTTCAAAAACTGTTAACCGAAT  573

seq1  TGGGAGAGGGTCCAGAGTTCCAGGATCTCACAGGTACCCCATTGATATCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAGGGTCCAGAGTTCCAGGATCTCACAGGTACCCCATTGATATCA  623

seq1  GGTTTCCTGATGCTGTCTATGCACCTGCTGCACCCACACACACACATTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCTGATGCTGTCTATGCACCTGCTGCACCCACACACACACATTAG  673

seq1  AGTTAAAGTCTGAACATTCACCCTTCAAATCACAGATGGGAAATTCTTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAGTCTGAACATTCACCCTTCAAATCACAGATGGGAAATTCTTTC  723

seq1  TCCTGTTTAATGCATTTGTCTCCACATTTGCTCAATATCAACCTACGTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTAATGCATTTGTCTCCACATTTGCTCAATATCAACCTACGTTT  773

seq1  TTCTTTTACAAGAAACATAATGAAATGACAGATGCTGATGAACGATATCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTACAAGAAACATAATGAAATGACAGATGCTGATGAACGATATCT  823

seq1  GACAGTCAAGAACATGTTATAGCTCGTATGTGAGCACTACTCATCATAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCAAGAACATGTTATAGCTCGTATGTGAGCACTACTCATCATAGT  873

seq1  TGGCTCATATTTTGTGATTCATTCTGAAACCAATCTTCTGTGTGGAATCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCATATTTTGTGATTCATTCTGAAACCAATCTTCTGTGTGGAATCT  923

seq1  CCACGTTACACATCTTTAATAATAAACAACATTCTCAATTAATGTGCATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTTACACATCTTTAATAATAAACAACATTCTCAATTAATGTGCATG  973

seq1  AAGAATCTCATTTCTGATAGTCAATGTCTGCACTCAAGGTTCTCTAGTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCTCATTTCTGATAGTCAATGTCTGCACTCAAGGTTCTCTAGTAA  1023

seq1  TTTATCTTTCAGGAAAAGAAACAGAAAAAGCTGAGGAACATAGAGTCAGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTTCAGGAAAAGAAACAGAAAAAGCTGAGGAACATAGAGTCAGT  1073

seq1  AGGGATCAAACTTCCTGCATTCACCTAGCAAGTCAGTGTACAGATTCTTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCAAACTTCCTGCATTCACCTAGCAAGTCAGTGTACAGATTCTTC  1123

seq1  AATAAGGAAACAGCAAAGAATTC  1172
      |||||||||||||||||||||||
seq2  AATAAGGAAACAGCAAAGAATTC  1146