BAC Information

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BAC

Clone NameB6Ng01-229P18
Chromosome17 (Build37)
Map Location 35,999,110 - 36,131,160
singlet/doubletdoublet
Overlap geneNrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1
Upstream geneCfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1
Downstream geneH2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229P18.bB6Ng01-229P18.g
ACCGA042968GA042969
length1,043416
definitionB6Ng01-229P18.b B6Ng01-229P18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,130,122 - 36,131,160)(35,999,110 - 35,999,531)
sequence
caagacagccagggctacacagagaaaccctgtctcaaaaaataaaacca
aataaataaataaataaataaataaataaataaataaataaataaataaa
taaataaatgactttttccaaccattgaaatctgctacgagtagaagaac
gaagctaaacggtttcaaaacagcagcaacgcaatagctctaagataatt
tttatttgtggtatgagataaggtcttgttatttagcccaggatagccta
tctgttcacagcaatcctcttgtctcagcctgaaaagctggggttaaagg
ggtgcaccacagcccagctccatcgaacgtcgcgcgacgtcagggtttcc
tctgcgcagccatgacgcatcttgaccagcaggtggcactgcggagtcgc
aggtgcggtggaccgaccctttacccaaggctgtggggatcttgagttcc
aagtgtttttcctgctgttgcagctactcattacttactacctactgata
cataatatttcaacataaagatgagctgtagccgcacagctatctgaacg
tcaccaccagttataggctgttgtgagctgctgggtgtgaatgctagaaa
ccctggaagagaatcaagtgctcctaaattgctgagccttctctccaccc
catagccaaattacttgacaattacatccttattccaatgcctgcacctc
tatcccgctatatggggccttcaagctcatctcttcaatgggtccactgc
accacaatgttcaatgcccaccctgaccctgcccaccccccacccccacc
caattaccttcaacctccatcgtcttcctctgggccttctctcctccctc
ccctttacattcatgggttttctctaactggcttactcctcttcccagac
agaagtcagacgcctgcgattctcctctcttcctacacaggttcttcagc
ttacactacacttctggacgatggacctattcctcctctaccaacttcta
tgctgatggtggccattgatctacagccagcattccacttccc
agaggcctatgtattctttttttttttttttttttaagatttatttattt
attttggtgttttgagacagggtttctctgtatagctctggctgtcctgg
aactcactctgtagaccaggctggcctcaaactcagaaatccgcctgcct
ctgcctcccgagtactgggattaaaggtgtgggccaccatgcctttcttt
ctttctttctttctttctttctttctttctttctttcttaagatttattt
attttatgtatatgagtaaaccttagctgtcttcagacacaccagaagag
ggcataagatcctattacagatggttgtaagccaccatgtggtagctagg
aattgaactcaggacctctggaagagcagccagagcagccagtgcttatt
gaggggggagggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36130122_36131160
seq2: B6Ng01-229P18.b_53_1095 (reverse)

seq1  GGGAAGAG--ATGCTGGCTGGAGA-CATTGGGCACCATCAGCATAG-AGG  46
      |||||| |  |||||||||| ||| || ||| |||||||||||||| || 
seq2  GGGAAGTGGAATGCTGGCTGTAGATCAATGGCCACCATCAGCATAGAAGT  50

seq1  TGGGAGGAGAGGAATAGGT-CATC-TTCAG-AGTGTAGTGTAAGCTG-AG  92
      ||| ||  ||||||||||| |||| | ||| |||||||||||||||| ||
seq2  TGGTAGAGGAGGAATAGGTCCATCGTCCAGAAGTGTAGTGTAAGCTGAAG  100

seq1  AACCTGTGTAGGAAGAGAGGAGAATTTGCAGGCGTCTTACTTCTTGTCTG  142
      |||||||||||||||||||||||| | |||||||||| ||||| ||||||
seq2  AACCTGTGTAGGAAGAGAGGAGAA-TCGCAGGCGTCTGACTTC-TGTCTG  148

seq1  GGAAGAGGAGTAAGCCAGTTAGAGAAAA-CCAGGAATGTAAAGGGGAGGG  191
      |||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  GGAAGAGGAGTAAGCCAGTTAGAGAAAACCCATGAATGTAAAGGGGAGGG  198

seq1  AGGAGAGAAGGCCCAGAGGAAGACGATGGAGGTTGAAGGTAATTGGGTTG  241
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGAGAGAAGGCCCAGAGGAAGACGATGGAGGTTGAAGGTAATTGGG-TG  247

seq1  GGGGTGGGGGGTGGGCAGGGTCAGGGT-GGCATTGAACATTGTGGTGCAG  290
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGGGTGGGGGGTGGGCAGGGTCAGGGTGGGCATTGAACATTGTGGTGCAG  297

seq1  TGGACCCATTGAAGAGATGAGCTTGAAGGCCCCATATAGC-GGATAGAGG  339
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGGACCCATTGAAGAGATGAGCTTGAAGGCCCCATATAGCGGGATAGAGG  347

seq1  TGCAGGCATTGGAATAAGGATGTAATTGTCAAGTAATTTGGCTATGGGGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCATTGGAATAAGGATGTAATTGTCAAGTAATTTGGCTATGGGGT  397

seq1  GGAGAGAAGGCTCAGCAATTTAGGAGCACTTGATTCTCTTCCAGGGTTTC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAGGCTCAGCAATTTAGGAGCACTTGATTCTCTTCCAGGGTTTC  447

seq1  TAGCATTCACACCCAGCAGCTCACAACAGCCTATAACTGGTGGTGACGTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTCACACCCAGCAGCTCACAACAGCCTATAACTGGTGGTGACGTT  497

seq1  CAGATAGCTGTGCGGCTACAGCTCATCTTTATGTTGAAATATTATGTATC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGCTGTGCGGCTACAGCTCATCTTTATGTTGAAATATTATGTATC  547

seq1  AGTAGGTAGTAAGTAATGAGTAGCTGCAACAGCAGGAAAAACACTTGGAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTAGTAAGTAATGAGTAGCTGCAACAGCAGGAAAAACACTTGGAA  597

seq1  CTCAAGATCCCCACAGCCTTGGGTAAAGGGTCGGTCCACCGCACCTGCGA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGATCCCCACAGCCTTGGGTAAAGGGTCGGTCCACCGCACCTGCGA  647

seq1  CTCCGCAGTGCCACCTGCTGGTCAAGATGCGTCATGGCTGCGCAGAGGAA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCAGTGCCACCTGCTGGTCAAGATGCGTCATGGCTGCGCAGAGGAA  697

seq1  ACCCTGACGTCGCGCGACGTTCGATGGAGCTGGGCTGTGGTGCACCCCTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGACGTCGCGCGACGTTCGATGGAGCTGGGCTGTGGTGCACCCCTT  747

seq1  TAACCCCAGCTTTTCAGGCTGAGACAAGAGGATTGCTGTGAACAGATAGG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCAGCTTTTCAGGCTGAGACAAGAGGATTGCTGTGAACAGATAGG  797

seq1  CTATCCTGGGCTAAATAACAAGACCTTATCTCATACCACAAATAAAAATT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTGGGCTAAATAACAAGACCTTATCTCATACCACAAATAAAAATT  847

seq1  ATCTTAGAGCTATTGCGTTGCTGCTGTTTTGAAACCGTTTAGCTTCGTTC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGAGCTATTGCGTTGCTGCTGTTTTGAAACCGTTTAGCTTCGTTC  897

seq1  TTCTACTCGTAGCAGATTTCAATGGTTGGAAAAAGTCATTTATTTATTTA  939
      |||||||||||||||||||||||||||||||||||||    |||||||||
seq2  TTCTACTCGTAGCAGATTTCAATGGTTGGAAAAAGTC----ATTTATTTA  943

seq1  TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATT  993

seq1  TGGTTTTATTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCTTG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTATTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCTTG  1043

seq1: chr17_35999110_35999531
seq2: B6Ng01-229P18.g_68_489

seq1  GAATTCAGAGGCCTATGTATTCTTTTTTTTTTTTTTTTTTTAAGATTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGCCTATGTATTCTTTTTTTTTTTTTTTTTTTAAGATTTAT  50

seq1  TTATTTATTTTGGTGTTTTGAGACAGGGTTTCTCTGTATAGCTCTGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTTGGTGTTTTGAGACAGGGTTTCTCTGTATAGCTCTGGCTG  100

seq1  TCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGC  150

seq1  CTGCCTCTGCCTCCCGAGTACTGGGATTAAAGGTGTGGGCCACCATGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCCTCCCGAGTACTGGGATTAAAGGTGTGGGCCACCATGCCT  200

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTAAGAT  250

seq1  TTATTTATTTTATGTATATGAGTAAACCTTAGCTGTCTTCAGACACACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTTATGTATATGAGTAAACCTTAGCTGTCTTCAGACACACCA  300

seq1  GAAGAGGGCATAAGATCCTATTACAGATGGTTGTAAGCCACCATGTGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGCATAAGATCCTATTACAGATGGTTGTAAGCCACCATGTGGTA  350

seq1  GCTAGGAATTGAACTCAGGACCTCTGGAAGAGCAGCCAGAGCAGCCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAATTGAACTCAGGACCTCTGGAAGAGCAGCCAGAGCAGCCAGTG  400

seq1  CTTATTGAGGGGGGAGGGGGGA  422
      ||||||||||||||||||||||
seq2  CTTATTGAGGGGGGAGGGGGGA  422