BAC Information

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BAC

Clone NameB6Ng01-230P17
Chromosome17 (Build37)
Map Location 77,375,628 - 77,472,104
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043886, EG624348
Downstream geneLOC545234, LOC100043887
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230P17.bB6Ng01-230P17.g
ACCGA043703GA043704
length1,0861,125
definitionB6Ng01-230P17.b B6Ng01-230P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,471,024 - 77,472,104)(77,375,628 - 77,376,721)
sequence
gaattcatctcaacataaatttattcttttacattttagcatatcatacc
agtaacttaccatcctaacttataactataataatatttatatattttag
tagatgagaagcataacatttttagctattaaacaaattgttattagcat
tctcaatgcttagatttatagctacctgaacccaatactctatcagatgt
ataaacggcaacaatacatgttttgcacattccctttatatgaatttaaa
aaatatatgattgaaaaataaatgcaaattcttggttttcttgtgaactg
tagctcctgagttgatagaggaagtagggggtagactaaagaacctgaca
aaaatggtaacaagatttctttgatggaggatagccagggatttgttttg
ttttaatttattttaaatacaaaatttgcaaattataatttatggggtta
atagaagacataaatccagatttgacatccagtgagcaaagaagcacaca
aatgtcaattagaaggatatttgggtaagttataaaagaccagagactaa
tggaggtcagaccatatttccaaagccaaaatgctaagacacccctatac
agtaaatagagtactctgtacttagagcttttcagattattagaaatcac
agcatctcagaaacatgtgaagaagaaaataagaaaagtccaaaatgatt
ttgaattcatttgaagaaaataatgtattattcaaatataaaccattatt
aactaataattcacagagctttatttttattggatagtttatttatttac
atttcacatgttattcccttttctcggttctcccctctagaagccccctt
tcccatcctcctgcccctgctgcttctatgaagggtgttcgccacctttc
ccacccacttctgccactccaagcttgcattaccctatgctaaggaaatc
cactaccaagaaccctcttctctcattgatgcctaaacaaaagttattca
ctactaagtatgtggctggagccatgggtcctccatgtgcactcttttgg
gttagtgattagtcctgggggagtctgggtggttga

gaattctgttaacatttctatatgcagaagttatggtgcagtaaatgccc
tgctgacagatgtgtttataagtaacccaggtcactgtaaatttcagttg
gatgagaagattggaaggaaatataaaatatggctaattgtgtgtcggtt
atattgtttctgggttcagagaagaggtaaaaacactttctataaaacaa
atggtttaaattactccatgatctctttgttaattcatatttgccaggtg
ccctcccagagtgccactttaccctccaaaaaatattaatgctcaaaaat
agctgcacaagtaacttggaatatatgttatattcattttgcactgctaa
atatcaacacatgcttaaatgacaaaacaatatcaaaggatttagtgaag
tatacaaaatacttaaaatagtatagatttactaacccatcagaccaatt
tatattagtttataaatttaatgagatgcatagcttattaaaatgtattt
gatgcagaaggtataacaagccaacacaatgtattgtatttaaatattct
gtgattacttgtatgtatacacaaaccacttaggcaagcacagacattgc
taaaaatctataagagtagtgatttgttttgtgttattttttttttaatt
taaaggtactggaactccatcatgtactgaattgcgggcacacaggtggg
agagtacatattcccaatatgaatagatttctcttctcactctattcagc
tttttttactaaaataaggataatgaccttcaagaagacaatctgctttc
atgcagtatcaactcaaatgtttaactactatatcaacaagcacccttca
aagataaaacagacataattttcataagaggtatatatttatttcactaa
aagtttaaacgcctattaatgatcacatgactggggaaatttcaaaaatt
taaattgtcaatctgggtaactttcatttgtcacaacatttctagctaac
ctagaaagaaaaaattccatatgtttgtaatacttagctttattatttaa
cagtattaaaaatgttaagcatggtacctatttccatacctggagctaag
attttatattttaataaatttatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_77471024_77472104
seq2: B6Ng01-230P17.b_43_1128 (reverse)

seq1  TCAACCAACCAGACTCCCCAGGGACTAAATCACTAACC--AAAGAGTGCA  48
      ||||||| |||||||||||  ||||| |||||||||||  ||||||||||
seq2  TCAACCACCCAGACTCCCCCAGGACT-AATCACTAACCCAAAAGAGTGCA  49

seq1  CATGGAGGGACCCATGGCTCCAGCCACATACTTAGTAGTGAATAACTTT-  97
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  CATGGA-GGACCCATGGCTCCAGCCACATACTTAGTAGTGAATAACTTTT  98

seq1  -GTTAGGCATCAATGAGAGAAGAGGG-TCTTGGTAGTGGA-TTCCCTAGC  144
        |||||||||||||||||||||||| ||||||||||||| |||| ||||
seq2  GTTTAGGCATCAATGAGAGAAGAGGGTTCTTGGTAGTGGATTTCCTTAGC  148

seq1  ATAGGGTAATGCAAGCTTGGAGTGGCAGAAGTGGGTGGGAAGGTGGGCGA  194
      ||||||||||||||||||||||||||||||||||||||||| |  |||||
seq2  ATAGGGTAATGCAAGCTTGGAGTGGCAGAAGTGGGTGGGAAAGGTGGCGA  198

seq1  ACACCC-TCATAGAAGCAGCAGGGGCAGGAGGATGGGAAAGGGGGCTTCT  243
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTTCATAGAAGCAGCAGGGGCAGGAGGATGGGAAAGGGGGCTTCT  248

seq1  AGAGGGGAGAACCGAGAAAAGGGAATAACATGTGAAATGTAAATAAATAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGAGAACCGAGAAAAGGGAATAACATGTGAAATGTAAATAAATAA  298

seq1  ACTATCCAATAAAAATAAAGCTCTGTGAATTATTAGTTAATAATGGTTTA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCAATAAAAATAAAGCTCTGTGAATTATTAGTTAATAATGGTTTA  348

seq1  TATTTGAATAATACATTATTTTCTTCAAATGAATTCAAAATCATTTTGGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAATAATACATTATTTTCTTCAAATGAATTCAAAATCATTTTGGA  398

seq1  CTTTTCTTATTTTCTTCTTCACATGTTTCTGAGATGCTGTGATTTCTAAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTATTTTCTTCTTCACATGTTTCTGAGATGCTGTGATTTCTAAT  448

seq1  AATCTGAAAAGCTCTAAGTACAGAGTACTCTATTTACTGTATAGGGGTGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAAAAGCTCTAAGTACAGAGTACTCTATTTACTGTATAGGGGTGT  498

seq1  CTTAGCATTTTGGCTTTGGAAATATGGTCTGACCTCCATTAGTCTCTGGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCATTTTGGCTTTGGAAATATGGTCTGACCTCCATTAGTCTCTGGT  548

seq1  CTTTTATAACTTACCCAAATATCCTTCTAATTGACATTTGTGTGCTTCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATAACTTACCCAAATATCCTTCTAATTGACATTTGTGTGCTTCTT  598

seq1  TGCTCACTGGATGTCAAATCTGGATTTATGTCTTCTATTAACCCCATAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACTGGATGTCAAATCTGGATTTATGTCTTCTATTAACCCCATAAA  648

seq1  TTATAATTTGCAAATTTTGTATTTAAAATAAATTAAAACAAAACAAATCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTTGCAAATTTTGTATTTAAAATAAATTAAAACAAAACAAATCC  698

seq1  CTGGCTATCCTCCATCAAAGAAATCTTGTTACCATTTTTGTCAGGTTCTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTATCCTCCATCAAAGAAATCTTGTTACCATTTTTGTCAGGTTCTT  748

seq1  TAGTCTACCCCCTACTTCCTCTATCAACTCAGGAGCTACAGTTCACAAGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTACCCCCTACTTCCTCTATCAACTCAGGAGCTACAGTTCACAAGA  798

seq1  AAACCAAGAATTTGCATTTATTTTTCAATCATATATTTTTTAAATTCATA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGAATTTGCATTTATTTTTCAATCATATATTTTTTAAATTCATA  848

seq1  TAAAGGGAATGTGCAAAACATGTATTGTTGCCGTTTATACATCTGATAGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGAATGTGCAAAACATGTATTGTTGCCGTTTATACATCTGATAGA  898

seq1  GTATTGGGTTCAGGTAGCTATAAATCTAAGCATTGAGAATGCTAATAACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGGTTCAGGTAGCTATAAATCTAAGCATTGAGAATGCTAATAACA  948

seq1  ATTTGTTTAATAGCTAAAAATGTTATGCTTCTCATCTACTAAAATATATA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTAATAGCTAAAAATGTTATGCTTCTCATCTACTAAAATATATA  998

seq1  AATATTATTATAGTTATAAGTTAGGATGGTAAGTTACTGGTATGATATGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATTATAGTTATAAGTTAGGATGGTAAGTTACTGGTATGATATGC  1048

seq1  TAAAATGTAAAAGAATAAATTTATGTTGAGATGAATTC  1081
      ||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTAAAAGAATAAATTTATGTTGAGATGAATTC  1086


seq1: chr17_77375628_77376721
seq2: B6Ng01-230P17.g_68_1192

seq1  GAATTCTGTTAACATTTCTATATGCAGAAGTTATGGTGCAGTAAATGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTAACATTTCTATATGCAGAAGTTATGGTGCAGTAAATGCCC  50

seq1  TGCTGACAGATGTGTTTATAAGTAACCCAGGTCACTGTAAATTTCAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACAGATGTGTTTATAAGTAACCCAGGTCACTGTAAATTTCAGTTG  100

seq1  GATGAGAAGATTGGAAGGAAATATAAAATATGGCTAATTGTGTGTCGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAAGATTGGAAGGAAATATAAAATATGGCTAATTGTGTGTCGGTT  150

seq1  ATATTGTTTCTGGGTTCAGAGAAGAGGTAAAAACACTTTCTATAAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTTCTGGGTTCAGAGAAGAGGTAAAAACACTTTCTATAAAACAA  200

seq1  ATGGTTTAAATTACTCCATGATCTCTTTGTTAATTCATATTTGCCAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTAAATTACTCCATGATCTCTTTGTTAATTCATATTTGCCAGGTG  250

seq1  CCCTCCCAGAGTGCCACTTTACCCTCCAAAAAATATTAATGCTCAAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCAGAGTGCCACTTTACCCTCCAAAAAATATTAATGCTCAAAAAT  300

seq1  AGCTGCACAAGTAACTTGGAATATATGTTATATTCATTTTGCACTGCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCACAAGTAACTTGGAATATATGTTATATTCATTTTGCACTGCTAA  350

seq1  ATATCAACACATGCTTAAATGACAAAACAATATCAAAGGATTTAGTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAACACATGCTTAAATGACAAAACAATATCAAAGGATTTAGTGAAG  400

seq1  TATACAAAATACTTAAAATAGTATAGATTTACTAACCCATCAGACCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAAATACTTAAAATAGTATAGATTTACTAACCCATCAGACCAATT  450

seq1  TATATTAGTTTATAAATTTAATGAGATGCATAGCTTATTAAAATGTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAGTTTATAAATTTAATGAGATGCATAGCTTATTAAAATGTATTT  500

seq1  GATGCAGAAGGTATAACAAGCCAACACAATGTATTGTATTTAAATATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAAGGTATAACAAGCCAACACAATGTATTGTATTTAAATATTCT  550

seq1  GTGATTACTTGTATGTATACACAAACCACTTAGGCAAGCACAGACATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTACTTGTATGTATACACAAACCACTTAGGCAAGCACAGACATTGC  600

seq1  TAAAAATCTATAAGAGTAGTGATTTGTTTTGTGTTATTTTTTTTTTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCTATAAGAGTAGTGATTTGTTTTGTGTTATTTTTTTTTTAATT  650

seq1  TAAAGGTACTGGAACTCCATCATGTACTGAATTGCGGGCACACAGGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTACTGGAACTCCATCATGTACTGAATTGCGGGCACACAGGTGGG  700

seq1  AGAGTACATATTCCCAATATGAATAGATTTCTCTTCTCACTCTATTCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACATATTCCCAATATGAATAGATTTCTCTTCTCACTCTATTCAGC  750

seq1  -TTTTTTACTAAAATAAGGATAATGACCTTCAAGAAGACAATCTGC-TTC  798
       ||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTTTTTACTAAAATAAGGATAATGACCTTCAAGAAGACAATCTGCTTTC  800

seq1  ATGCAGTATCAACTCAAATG-TTAACTACTATATCAACAAGCACCC-TCA  846
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  ATGCAGTATCAACTCAAATGTTTAACTACTATATCAACAAGCACCCTTCA  850

seq1  AAGATAAAACAGACATAA-TTTCATAAGAAGTATATATT--ATTCACT-A  892
      |||||||||||||||||| |||||||||| |||||||||   |||||| |
seq2  AAGATAAAACAGACATAATTTTCATAAGAGGTATATATTTATTTCACTAA  900

seq1  AAGTTTAAACG-CTATTAATGATCACATGACTGGG--AATTTC-AAAATT  938
      ||||||||||| |||||||||||||||||||||||  |||||| ||||||
seq2  AAGTTTAAACGCCTATTAATGATCACATGACTGGGGAAATTTCAAAAATT  950

seq1  TAAA-TGTCAATCT-GGTTACTTTCA-TTGTCACAACA-TTCTAGCTAAC  984
      |||| ||||||||| ||| ||||||| ||||||||||| |||||||||||
seq2  TAAATTGTCAATCTGGGTAACTTTCATTTGTCACAACATTTCTAGCTAAC  1000

seq1  CTAG-AAGAAAAA--TACATATG-TTGTAATAC-TAGC-TTATTA-TTAA  1027
      |||| ||||||||  | |||||| ||||||||| |||| |||||| ||||
seq2  CTAGAAAGAAAAAATTCCATATGTTTGTAATACTTAGCTTTATTATTTAA  1050

seq1  CAGTA-TAAAAATG-TAAGCAT-GTA-CTATTT-CATACCTGTAG-TAAG  1071
      ||||| |||||||| ||||||| ||| |||||| |||||||| || ||||
seq2  CAGTATTAAAAATGTTAAGCATGGTACCTATTTCCATACCTGGAGCTAAG  1100

seq1  -TATTATATTT--ATAAATTTTATAT  1094
       | ||||||||  ||||| |||||||
seq2  ATTTTATATTTTAATAAA-TTTATAT  1125


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