BAC Information

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BAC

Clone NameB6Ng01-231F11
Chromosome17 (Build37)
Map Location 83,852,936 - 83,966,801
singlet/doubletdoublet
Overlap geneEml4, Cox7a2l
Upstream geneEG625514, LOC100043711, LOC100043900, AW548124, EG545226
Downstream geneKcng3, Mta3, Haao, Zfp36l2, Thada, Plekhh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231F11.bB6Ng01-231F11.g
ACCGA043967GA043968
length1,1571,169
definitionB6Ng01-231F11.b B6Ng01-231F11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,965,647 - 83,966,801)(83,852,936 - 83,854,112)
sequence
gaattcctatctgacctcctgggaaatagcagcacacgaggagaaattcc
aggggcctatcaggaacaacgacacacagtaggaactgccaaaaccaaga
gcagtcacgcagaggggcattgcactgaaaggggtgcagttgattgattg
tatcctcaaacctgtttacactcacggagtgggagtctgtgatgcgcctc
ggctctgctttgagaggagttatttctgttattagaaatcagccatactg
tgtgatccataggacagggagagcatgcatgagtctcgtttaatcacatg
cagtttcctgggaggtggtttgaatttttaaagaactgctcttcattgat
agagattctgcggctggctgattaccaatggagccgccccgagctttgcc
taatgattttaaaacgcacatttgcatgtgtacttacaaacggctgagat
ggtgaagtgtataatatgtgttttaactataattttaaaaccccacacat
tcgcggtgattcatgattgtgcctctccagatgaaagggaagcatttatt
aaaactctcttcattagattttaaaactgaataaaattgttgcgttgatt
taaatcataaaggaatctataaaatttagagtaaacattttatttcaaac
ctaccccagcaggcacccactgctactattttgttgggtaatagttttgg
ctcttttttaattattcttttctttatgacaaggtctagtgtcactcagg
atgaccttgagtttgttgggtagccaaggatgaccttgaattgtgagtct
cctgcttccctctcccaggtgctgggagccgcaacacctggcttatgcag
tgttgggaaccagaccagagcttccagcttgccggacggtctaccaacag
agctctcagagcccgagatctcagacctttgttaataatagcatgcatgt
gaacacttgtaggtttaaaaaaagaagaagaaagagaccacaaacagagt
tgaaacgccaaagcgacccagagacgggatgagcatgcacacacagaaaa
tggagtgctactcagctttaaaatagacgtaatttccaatatgtgcgaac
aagttagataagccttcaaaacattatgctcagtcaggttagccctatgg
tgtaaaa

gaattcaatgtttattagtgattgccatgccctgagcttacagaggcttt
tgcaaagctccagggacactgaggtgggaggctgggatcctggctacagc
tttaccgatacctgggatccttgctttgcaaactcgtcacactcacacta
ctctaaaactgcacaaagctatcacgggagatgacgctgacgttggtgct
gagctgcactttatatcccctgtggtctgaacaggaagcactgttgcagc
agcttacagggttgttttttgttttgtttttttaaggatgtatcttgttt
attagtgttcttgcctagctagcatgcacaaggccttgctttgatcccca
acactacataaactgaacatttggaaggtagagacaagatatttaaggcc
atcctcaactacattacaagttcaaggctagcctgggataacaagaagac
ccacttaaaaacaactttaatgcctccccaactccaccaaacacagagag
ggagagagacatacagagagacagagacagagattgagagagaaaggctg
ttgcttacagggtttttaaagaaaatatttgtagagtgcatgatcctgct
gtaactgtaaaggactacattcagtctgaagtctctgtgcctgccatgtt
tctgtagcttactgggaccaggttcttgcttagggaaatgtgaactgtct
gcgaattcaccctgtagctctgctaaagctggtttccagagagatactaa
agtctaataaaacgtgtttatttctcgtgttttcattttttttcttacca
tattaggtgtgtatcagatcaacagacaaatcaaagctcatgatggcagt
gtgtttacactttgtcagatgagaaatgggatgctattaactggaggcgg
aaaagacagaaaaataattttgtgggatcatgatctgaaccttgaagaga
atagaggtaaggctgggaaatggaatcttaaagcaaaactctactcacag
ccgggcgtggcagcacacgccttgttatcccagcactgagagcagaggca
gcgatttcttgagtccgagctgctggtcttacagagtgagttcaagaacg
gcaggcaacccagagagaaaacctgtctcaaaacgaaccaacaccgaccc
tctacttcatgcattttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_83965647_83966801
seq2: B6Ng01-231F11.b_45_1201 (reverse)

seq1  TTTTACA-CATA--GCTTAACTGACTGAGCATAATGTTTTGAA-GCTTAT  46
      ||||||| ||||  ||| | ||||||||||||||||||||||| ||||||
seq2  TTTTACACCATAGGGCTAACCTGACTGAGCATAATGTTTTGAAGGCTTAT  50

seq1  CTACCTTG-TCGCACATATTGG-AATTACGTTCTATTTTAAAGCTGAGTA  94
      ||| |||| ||||||||||||| ||||||| |||||||||||||||||||
seq2  CTAACTTGTTCGCACATATTGGAAATTACG-TCTATTTTAAAGCTGAGTA  99

seq1  ACACTCCATTTTCTGTGTGTGCATTGCTCATCCCGTCTCTTGGGTCGCTT  144
       |||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  GCACTCCATTTTCTGTGTGTGCA-TGCTCATCCCGTCTC-TGGGTCGCTT  147

seq1  TGGCGTTTCAACCTCTGTTTTGTGGTCTCTTTCTTCTTCTTTTTTT-AAC  193
      ||||||||||| ||||| |||||||||||||||||||||||||||| |||
seq2  TGGCGTTTCAA-CTCTG-TTTGTGGTCTCTTTCTTCTTCTTTTTTTAAAC  195

seq1  CTACAAGTGTTCACATGCATGCTATTATTAACAAAGGTCTGAGATCTCGG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGTGTTCACATGCATGCTATTATTAACAAAGGTCTGAGATCTCGG  245

seq1  GCTCTGAGAGCTCTGTTGGTAGACCGTCCGGCAAGCTGGAAGCTCTGGTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAGAGCTCTGTTGGTAGACCGTCCGGCAAGCTGGAAGCTCTGGTC  295

seq1  TGGTTCCCAACACTGCATAAGCCAGGTGTTGCGGCTCCCAGCACCTGGGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCCAACACTGCATAAGCCAGGTGTTGCGGCTCCCAGCACCTGGGA  345

seq1  GAGGGAAGCAGGAGACTCACAATTCAAGGTCATCCTTGGCTACCCAACAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGCAGGAGACTCACAATTCAAGGTCATCCTTGGCTACCCAACAA  395

seq1  ACTCAAGGTCATCCTGAGTGACACTAGACCTTGTCATAAAGAAAAGAATA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGGTCATCCTGAGTGACACTAGACCTTGTCATAAAGAAAAGAATA  445

seq1  ATTAAAAAAGAGCCAAAACTATTACCCAACAAAATAGTAGCAGTGGGTGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAGAGCCAAAACTATTACCCAACAAAATAGTAGCAGTGGGTGC  495

seq1  CTGCTGGGGTAGGTTTGAAATAAAATGTTTACTCTAAATTTTATAGATTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGGGTAGGTTTGAAATAAAATGTTTACTCTAAATTTTATAGATTC  545

seq1  CTTTATGATTTAAATCAACGCAACAATTTTATTCAGTTTTAAAATCTAAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGATTTAAATCAACGCAACAATTTTATTCAGTTTTAAAATCTAAT  595

seq1  GAAGAGAGTTTTAATAAATGCTTCCCTTTCATCTGGAGAGGCACAATCAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGTTTTAATAAATGCTTCCCTTTCATCTGGAGAGGCACAATCAT  645

seq1  GAATCACCGCGAATGTGTGGGGTTTTAAAATTATAGTTAAAACACATATT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACCGCGAATGTGTGGGGTTTTAAAATTATAGTTAAAACACATATT  695

seq1  ATACACTTCACCATCTCAGCCGTTTGTAAGTACACATGCAAATGTGCGTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTTCACCATCTCAGCCGTTTGTAAGTACACATGCAAATGTGCGTT  745

seq1  TTAAAATCATTAGGCAAAGCTCGGGGCGGCTCCATTGGTAATCAGCCAGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCATTAGGCAAAGCTCGGGGCGGCTCCATTGGTAATCAGCCAGC  795

seq1  CGCAGAATCTCTATCAATGAAGAGCAGTTCTTTAAAAATTCAAACCACCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGAATCTCTATCAATGAAGAGCAGTTCTTTAAAAATTCAAACCACCT  845

seq1  CCCAGGAAACTGCATGTGATTAAACGAGACTCATGCATGCTCTCCCTGTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAAACTGCATGTGATTAAACGAGACTCATGCATGCTCTCCCTGTC  895

seq1  CTATGGATCACACAGTATGGCTGATTTCTAATAACAGAAATAACTCCTCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGATCACACAGTATGGCTGATTTCTAATAACAGAAATAACTCCTCT  945

seq1  CAAAGCAGAGCCGAGGCGCATCACAGACTCCCACTCCGTGAGTGTAAACA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAGAGCCGAGGCGCATCACAGACTCCCACTCCGTGAGTGTAAACA  995

seq1  GGTTTGAGGATACAATCAATCAACTGCACCCCTTTCAGTGCAATGCCCCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAGGATACAATCAATCAACTGCACCCCTTTCAGTGCAATGCCCCT  1045

seq1  CTGCGTGACTGCTCTTGGTTTTGGCAGTTCCTACTGTGTGTCGTTGTTCC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTGACTGCTCTTGGTTTTGGCAGTTCCTACTGTGTGTCGTTGTTCC  1095

seq1  TGATAGGCCCCTGGAATTTCTCCTCGTGTGCTGCTATTTCCCAGGAGGTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGCCCCTGGAATTTCTCCTCGTGTGCTGCTATTTCCCAGGAGGTC  1145

seq1  AGATAGGAATTC  1155
      ||||||||||||
seq2  AGATAGGAATTC  1157


seq1: chr17_83852936_83854112
seq2: B6Ng01-231F11.g_70_1238

seq1  GAATTCAATGTTTATTAGTGATTGCCATGCCCTGAGCTTACAGAGGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTTTATTAGTGATTGCCATGCCCTGAGCTTACAGAGGCTTT  50

seq1  TGCAAAGCTCCAGGGACACTGAGGTGGGAGGCTGGGATCCTGGCTACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCTCCAGGGACACTGAGGTGGGAGGCTGGGATCCTGGCTACAGC  100

seq1  TTTACCGATACCTGGGATCCTTGCTTTGCAAACTCGTCACACTCACACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCGATACCTGGGATCCTTGCTTTGCAAACTCGTCACACTCACACTA  150

seq1  CTCTAAAACTGCACAAAGCTATCACGGGAGATGACGCTGACGTTGGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAACTGCACAAAGCTATCACGGGAGATGACGCTGACGTTGGTGCT  200

seq1  GAGCTGCACTTTATATCCCCTGTGGTCTGAACAGGAAGCACTGTTGCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCACTTTATATCCCCTGTGGTCTGAACAGGAAGCACTGTTGCAGC  250

seq1  AGCTTACAGGGTTGTTTTTTGTTTTGTTTTTTTAAGGATGTATCTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACAGGGTTGTTTTTTGTTTTGTTTTTTTAAGGATGTATCTTGTTT  300

seq1  ATTAGTGTTCTTGCCTAGCTAGCATGCACAAGGCCTTGCTTTGATCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGTTCTTGCCTAGCTAGCATGCACAAGGCCTTGCTTTGATCCCCA  350

seq1  ACACTACATAAACTGAACATTTGGAAGGTAGAGACAAGATATTTAAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACATAAACTGAACATTTGGAAGGTAGAGACAAGATATTTAAGGCC  400

seq1  ATCCTCAACTACATTACAAGTTCAAGGCTAGCCTGGGATAACAAGAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAACTACATTACAAGTTCAAGGCTAGCCTGGGATAACAAGAAGAC  450

seq1  CCACTTAAAAACAACTTTAATGCCTCCCCAACTCCACCAAACACAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAAAAACAACTTTAATGCCTCCCCAACTCCACCAAACACAGAGAG  500

seq1  GGAGAGAGACATACAGAGAGACAGAGACAGAGATTGAGAGAGAAAGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGACATACAGAGAGACAGAGACAGAGATTGAGAGAGAAAGGCTG  550

seq1  TTGCTTACAGGGTTTTTAAAGAAAATATTTGTAGAGTGCATGATCCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTACAGGGTTTTTAAAGAAAATATTTGTAGAGTGCATGATCCTGCT  600

seq1  GTAACTGTAAAGGACTACATTCAGTCTGAAGTCTCTGTGCCTGCCATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGTAAAGGACTACATTCAGTCTGAAGTCTCTGTGCCTGCCATGTT  650

seq1  TCTGTAGCTTACTGGGACCAGGTTCTTGCTTAGGGAAATGTGAACTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGCTTACTGGGACCAGGTTCTTGCTTAGGGAAATGTGAACTGTCT  700

seq1  GCGAATTCACCCTGTAGCTCTGCTAAAGCTGGTTTCCAGAGAGATACTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAATTCACCCTGTAGCTCTGCTAAAGCTGGTTTCCAGAGAGATACTAA  750

seq1  AGTCTAATAAAACGTGTTTATTTCTCGTGTTTTCA-TTTTTTTCTTACCA  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTCTAATAAAACGTGTTTATTTCTCGTGTTTTCATTTTTTTTCTTACCA  800

seq1  TATTAGGTGTGTATCAGATCAACAGACAAATCAAAGCTCATGATGGCAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGTGTGTATCAGATCAACAGACAAATCAAAGCTCATGATGGCAGT  850

seq1  GTGTTTACACTTTGTCAGATGAGAAATGGGATGCTATTAACTGGAGGCGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTACACTTTGTCAGATGAGAAATGGGATGCTATTAACTGGAGGCGG  900

seq1  AAAAGACAGAAAAATAATTTTGTGGGATCATGATCTGAACCTTGAAAGAG  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAAGACAGAAAAATAATTTTGTGGGATCATGATCTGAACCTTG-AAGAG  949

seq1  AAATAGAGGTAAGGCTGGG-AATGGAATCTTAAAGCAAAACTCTACTCAC  998
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  -AATAGAGGTAAGGCTGGGAAATGGAATCTTAAAGCAAAACTCTACTCAC  998

seq1  AGCCGGGCGTGGCAGCACACGCC-TGTAATCCCAGCACTGAGGAAGCAGA  1047
      ||||||||||||||||||||||| ||| ||||||||||||||  ||||||
seq2  AGCCGGGCGTGGCAGCACACGCCTTGTTATCCCAGCACTGAG--AGCAGA  1046

seq1  GGCAGGCGGATTTC-TGAGTTCGAGGCCTGCCTGGTC-TACAGAGTGAGT  1095
      |||||   |||||| ||||| ||||  ||| |||||| ||||||||||||
seq2  GGCAG--CGATTTCTTGAGTCCGAG--CTG-CTGGTCTTACAGAGTGAGT  1091

seq1  TCCAGGACAGCCAGGGCAA--CACAGAGAAACCCTGTCTCAAAAACAAAC  1143
      || || || ||   |||||  || ||||||| ||||||||||||  || |
seq2  TCAAGAACGGC--AGGCAACCCAGAGAGAAAACCTGTCTCAAAACGAACC  1139

seq1  ACAAACAAACAAACACTCTAC-TCATGCATTTTGT  1177
      |     | ||  || |||||| |||||||||||||
seq2  A-----ACACCGACCCTCTACTTCATGCATTTTGT  1169


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