BAC Information

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BAC

Clone NameB6Ng01-232A03
Chromosome17 (Build37)
Map Location 73,538,384 - 73,696,114
singlet/doubletdoublet
Overlap geneLycat, LOC668709, Capn13
Upstream geneAlk, Ypel5, Lbh
Downstream geneLOC100043666, Galnt14, Ehd3, LOC240160, Xdh, Srd5a2, Memo1, EG668716
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232A03.bB6Ng01-232A03.g
ACCGA044451GA044452
length1,126932
definitionB6Ng01-232A03.b B6Ng01-232A03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,538,384 - 73,539,877)(73,695,186 - 73,696,114)
sequence
gaattccaaaatgatattgaggtagacttaatctcttctaccagttctgt
atattctcttccaaagtattatttttcctgtaaaccatttatccttcaag
ttcttttatataagaaaagaatctaaaagtaactaattttaaatcttatg
acctttccactgatacttaaattatctccctactagaaaaaagctttgtc
tcttgagaaaaaccatttatacttgtgttggagatgggatgcagaactgt
atatttggaacctttctacttcagcaaataaaaacaagattaataaaaac
actacatagtctgtcacatgtactaaagtagtgtttttacagagcagacc
taacatggataagtgtagagctattctggttgattattggaaggctttgg
gaggacttagggttgaattagagggagctctgtagaaaaaggccaaaggg
gccctttctccagtgtgataaaccattccttcaaagagtgattcagcagg
atgtgagagggtgttgtggtatgctgtatgcggggacacaaacctaagag
ggcatggaatgaaagacaaaatgggcaagtcgtatggcaaagaggaatat
aaacttatcttccaggacctgtaatatgcagcacaacacagtagtgatct
caaatatctttgatcaagaaccaacagggatgtttcaaagtccaatttgc
aaccgaaagctggactttcagaaaactctgaataaaaaaactacaaagct
tcccaacagaggtcttccctctgtcccaaataaacactggtgccccaccc
acccgacagtacctctaggatttttattctttatgcatagcgtaacgtct
catagtacccacttttataaattggcattttccaccgcattaatgtttct
tttcagcttcacaaagaaaccaggaaataaactgtcaatgacacttgcag
catacacctctaacagaagattaaaacctgatagagcgagatgcatctag
gctgttgtacaataacaaagaacagaattttaaagtgcaagtcaagtctg
cagctttcaagggagcgtttagaactcattcagtgtcttaagccagcctc
agaataaaattccagttgttcctctg

gaattctccctttgcctgccacttgcttactcggtggtcttgcaagagtt
gcttcacctctataattctgtctcttcctctgaaaggcatagattagaga
aatactcaccccagagaactgagagaaagctggctgggatgtctgcactg
tttctccttgtccagtaataggccattcgatttttcagctgcctctaaca
tggagtgggtgggcagctccctctttctctaggtcttccatctccttaga
cagcattagcatggatcaatagcccagatacaactcaatcatgttcccgt
ccccgtctctagggtgagggctcccagctcccagaactgggctgatggtt
ggctgttctttgttctgatgttcccatagccctaccatctacctacaagt
gataccctgcatgttggtggcagggatcaagaagaagggagttcaggcta
ttagaggccaccttctcatagactggggtctctggccagaggcaagatgt
ggaatgaaaagagctagccttgactatcctagctccaaggatgcctctat
cttcctcacatcggcactctcactcacaacaagactgcactgcagtccca
ggtgggtggctggcaggtgggataagagatgccttctgtgtgacagatta
gaagaggcaggggaccacaaagctatcacctaccctacagacaaatgcag
cagccccagctaggcatctgcagttacatctgaattcacccactttccag
gagacagcacccaacaaaatggagctaccctgcacctgctgggggctgag
caaaacaagggtctttttcatctcctgcctcccttttctctcttccttct
ctcattccaactccatgcaggcagcaagagagacattgatttcttcttct
tcttcttcttccttcttcttcttctccttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_73538384_73539877
seq2: B6Ng01-232A03.b_46_1171

seq1  GAATTCCAAAATGATATTGAGGTAGACTTAATCTCTTCTACCAGTTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAATGATATTGAGGTAGACTTAATCTCTTCTACCAGTTCTGT  50

seq1  ATATTCTCTTCCAAAGTATTATTTTTCCTGTAAACCATTTATCCTTCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCTTCCAAAGTATTATTTTTCCTGTAAACCATTTATCCTTCAAG  100

seq1  TTCTTTTATATAAGAAAAGAATCTAAAAGTAACTAATTTTAAATCTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTATATAAGAAAAGAATCTAAAAGTAACTAATTTTAAATCTTATG  150

seq1  ACCTTTCCACTGATACTTAAATTATCTCCCTACTAGAAAAAAGCTTTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCACTGATACTTAAATTATCTCCCTACTAGAAAAAAGCTTTGTC  200

seq1  TCTTGAGAAAAACCATTTATACTTGTGTTGGAGATGGGATGCAGAACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGAAAAACCATTTATACTTGTGTTGGAGATGGGATGCAGAACTGT  250

seq1  ATATTTGGAACCTTTCTACTTCAGCAAATAAAAACAAGATTAATAAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGGAACCTTTCTACTTCAGCAAATAAAAACAAGATTAATAAAAAC  300

seq1  ACTACATAGTCTGTCACATGTACTAAAGTAGTGTTTTTACAGAGCAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATAGTCTGTCACATGTACTAAAGTAGTGTTTTTACAGAGCAGACC  350

seq1  TAACATGGATAAGTGTAGAGCTATTCTGGTTGATTATTGGAAGGCTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGGATAAGTGTAGAGCTATTCTGGTTGATTATTGGAAGGCTTTGG  400

seq1  GAGGACTTAGGGTTGAATTAGAGGGAGCTCTGTAGAAAAAGGCCAAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTTAGGGTTGAATTAGAGGGAGCTCTGTAGAAAAAGGCCAAAGGG  450

seq1  GCCCTTTCTCCAGTGTGATAAACCATTCCTTCAAAGAGTGATTCAGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTCTCCAGTGTGATAAACCATTCCTTCAAAGAGTGATTCAGCAGG  500

seq1  ATGTGAGAGGGTGTTGTGGTATGCTGTATGCGGGGACACAAACCTAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGAGGGTGTTGTGGTATGCTGTATGCGGGGACACAAACCTAAGAG  550

seq1  GGCATGGAATGAAAGACAAAATGGGCAAGTCGTATGGCAAAGAGGAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGAATGAAAGACAAAATGGGCAAGTCGTATGGCAAAGAGGAATAT  600

seq1  AAACTTATCTTCCAGGACCTGTAATATGCAGCACAACACAGTAGTGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATCTTCCAGGACCTGTAATATGCAGCACAACACAGTAGTGATCT  650

seq1  CAAATATCTTTGATCAAGAACCAACAGGGATGTTTCAAAGTCCAATTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATCTTTGATCAAGAACCAACAGGGATGTTTCAAAGTCCAATTTGC  700

seq1  AACCGAAAGCTGGACTTTCAGAAAACTCTGAATAAAAAAACTACAAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAAAGCTGGACTTTCAGAAAACTCTGAATAAAAAAACTACAAAGCT  750

seq1  TCCCAACAGAGGTCTTCCCTCTGTCCCAAATAAACACTGGTGCCCCACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACAGAGGTCTTCCCTCTGTCCCAAATAAACACTGGTGCCCCACCC  800

seq1  ACCCGACAGTACCTCTAGGATTTTTATTCTTTATGCATAGCGTAACGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGACAGTACCTCTAGGATTTTTATTCTTTATGCATAGCGTAACGTCT  850

seq1  CATAAGTACCCACTTTTATAAATTGGCATTTTCCACCGCATTTAATGTTT  900
      ||| |||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAT-AGTACCCACTTTTATAAATTGGCATTTTCCACCGCA-TTAATGTTT  898

seq1  CTTTTCAGCTTCACAAAGAAACCAGGAAATAAAACTGTCAATGACACTTG  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTTTTCAGCTTCACAAAGAAACCAGGAAAT-AAACTGTCAATGACACTTG  947

seq1  CAGCATACA-CTCTAACAGAAGATAAAAACCTGATAAGAGCGAGATGCAT  999
      ||||||||| |||||||||||||| |||||||||| ||||||||||||||
seq2  CAGCATACACCTCTAACAGAAGATTAAAACCTGAT-AGAGCGAGATGCAT  996

seq1  CTAGGCTGTTGTAC-ATAACAAAG-ACAG-ATTTTAAAGTGCAAGTCAAA  1046
      |||||||||||||| ||||||||| |||| ||||||||||||||||| ||
seq2  CTAGGCTGTTGTACAATAACAAAGAACAGAATTTTAAAGTGCAAGTC-AA  1045

seq1  GTCTGCAGCTTTCAAGGGAGCGTTTAG-ACTCA-TCAGTGTCTTTAAAGC  1094
      ||||||||||||||||||||||||||| ||||| ||||||||||  ||||
seq2  GTCTGCAGCTTTCAAGGGAGCGTTTAGAACTCATTCAGTGTCTT--AAGC  1093

seq1  AAGCTTCAGAATAAAATTCCAGTTTGTTCTTCATGACATCTGTTTAAGAC  1144
       ||| ||||||||||||||||| |||||| ||                  
seq2  CAGCCTCAGAATAAAATTCCAG-TTGTTCCTCTG----------------  1126

seq1  TTAAAAAAAAAAAACCCCACAAAAGTCCACCTCACATGGGTAAAACAGAG  1194
                                                        
seq2  --------------------------------------------------  1126

seq1  TCTCATATCCTAAGGCTAACTCAGCTGTGGCGCGTCTGGCCCTTCTTCTC  1244
                                                        
seq2  --------------------------------------------------  1126

seq1  TCTGGCGGGCTTGGGTTTAGGGATGTACTGGTTATTAGCCTGGTTCCTTC  1294
                                                        
seq2  --------------------------------------------------  1126

seq1  TGGAAGTAATGGATGGCTTTGTTCAATCCTCCTTCTAGTAGAACCTCAGG  1344
                                                        
seq2  --------------------------------------------------  1126

seq1  TTCCCACCCCAGCATCACTTTTGCTTTTTTGGTGTCTGTTTTTCTTTTCT  1394
                                                        
seq2  --------------------------------------------------  1126

seq1  GTGAGTCATCCTGGGCTTCCGAGAGAAACTGAATTTCACTTCCACTACCC  1444
                                                        
seq2  --------------------------------------------------  1126

seq1  AACAAGGTCCTTACTTAACTGAGCAAATTCCAGGGTTGCGTGTTCCTCTG  1494
                                                        
seq2  --------------------------------------------------  1126


seq1: chr17_73695186_73696114
seq2: B6Ng01-232A03.g_71_1002 (reverse)

seq1  AAGAAGAAGAAGAAGAAGAA-GAAGAAGAAGAAGAAGAAGAAAATCAATG  49
      |||||| ||||||||||||| ||||||||||||||||||| |||||||||
seq2  AAGAAGGAGAAGAAGAAGAAGGAAGAAGAAGAAGAAGAAG-AAATCAATG  49

seq1  TCTCTCTTGCTGCCTGCATGGAGTTGGAATGAGAG-AGGGAGAGAG-AAA  97
      ||||||||||||||||||||||||||||||||||| ||| |||||| |||
seq2  TCTCTCTTGCTGCCTGCATGGAGTTGGAATGAGAGAAGGAAGAGAGAAAA  99

seq1  GGGAGGCAGGAGATGAAAAAGACCCTTGTTTTGCTCAGCCCCCAGCAGGT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGGAGATGAAAAAGACCCTTGTTTTGCTCAGCCCCCAGCAGGT  149

seq1  GCAGGGTAGCTCCATTTTGTTGGGTGCTGTCTCCTGG-AAGTGGGTGAAT  196
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCAGGGTAGCTCCATTTTGTTGGGTGCTGTCTCCTGGAAAGTGGGTGAAT  199

seq1  TCAGATGTAACTGCAGATGCCTAGCTGGGGCTGCTGCATTTGTCTGTAGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGTAACTGCAGATGCCTAGCTGGGGCTGCTGCATTTGTCTGTAGG  249

seq1  GTAGGTGATAGCTTTGTGGTCCCCTGCCTCTTCTAATCTGTCACACAGAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGATAGCTTTGTGGTCCCCTGCCTCTTCTAATCTGTCACACAGAA  299

seq1  GGCATCTCTTATCCCACCTGCCAGCCACCCACCTGGGACTGCAGTGCAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTCTTATCCCACCTGCCAGCCACCCACCTGGGACTGCAGTGCAGT  349

seq1  CTTGTTGTGAGTGAGAGTGCCGATGTGAGGAAGATAGAGGCATCCTTGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGTGAGTGAGAGTGCCGATGTGAGGAAGATAGAGGCATCCTTGGA  399

seq1  GCTAGGATAGTCAAGGCTAGCTCTTTTCATTCCACATCTTGCCTCTGGCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGATAGTCAAGGCTAGCTCTTTTCATTCCACATCTTGCCTCTGGCC  449

seq1  AGAGACCCCAGTCTATGAGAAGGTGGCCTCTAATAGCCTGAACTCCCTTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCCCAGTCTATGAGAAGGTGGCCTCTAATAGCCTGAACTCCCTTC  499

seq1  TTCTTGATCCCTGCCACCAACATGCAGGGTATCACTTGTAGGTAGATGGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATCCCTGCCACCAACATGCAGGGTATCACTTGTAGGTAGATGGT  549

seq1  AGGGCTATGGGAACATCAGAACAAAGAACAGCCAACCATCAGCCCAGTTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTATGGGAACATCAGAACAAAGAACAGCCAACCATCAGCCCAGTTC  599

seq1  TGGGAGCTGGGAGCCCTCACCCTAGAGACGGGGACGGGAACATGATTGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCTGGGAGCCCTCACCCTAGAGACGGGGACGGGAACATGATTGAG  649

seq1  TTGTATCTGGGCTATTGATCCATGCTAATGCTGTCTAAGGAGATGGAAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCTGGGCTATTGATCCATGCTAATGCTGTCTAAGGAGATGGAAGA  699

seq1  CCTAGAGAAAGAGGGAGCTGCCCACCCACTCCATGTTAGAGGCAGCTGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGAAAGAGGGAGCTGCCCACCCACTCCATGTTAGAGGCAGCTGAA  749

seq1  AAATCGAATGGCCTATTACTGGACAAGGAGAAACAGTGCAGACATCCCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGAATGGCCTATTACTGGACAAGGAGAAACAGTGCAGACATCCCAG  799

seq1  CCAGCTTTCTCTCAGTTCTCTGGGGTGAGTATTTCTCTAATCTATGCCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTCTCTCAGTTCTCTGGGGTGAGTATTTCTCTAATCTATGCCTT  849

seq1  TCAGAGGAAGAGACAGAATTATAGAGGTGAAGCAACTCTTGCAAGACCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGAAGAGACAGAATTATAGAGGTGAAGCAACTCTTGCAAGACCAC  899

seq1  CGAGTAAGCAAGTGGCAGGCAAAGGGAGAATTC  929
      |||||||||||||||||||||||||||||||||
seq2  CGAGTAAGCAAGTGGCAGGCAAAGGGAGAATTC  932


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