MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-232H21
Chromosome	17 (Build37)
Map Location	49,313,887 - 49,483,935
singlet/doublet	doublet
Overlap gene	none
Upstream gene	LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl, Lrfn2, 1700008K24Rik, LOC672972
Downstream gene	Mocs1, Daam2, Kif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100043419 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043419
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Trem1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58217 MGI:1930005
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trem3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58218 MGI:1930003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Treml4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224840 MGI:1923239
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Treml2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:328833 MGI:2147038
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	B430306N03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320148 MGI:2443478
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trem2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:83433 MGI:1913150
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Treml1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71326 MGI:1918576
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nfya (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18044 MGI:97316
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AI314976 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:106821 MGI:2146818
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Apobec2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11811 MGI:1343178
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bzrpl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70026 MGI:1917276
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Unc5cl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76589 MGI:1923839
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lrfn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70530 MGI:1917780
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700008K24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69311 MGI:1916561
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 26 ESTs

name	LOC672972 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:672972
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Mocs1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56738 MGI:1928904
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Daam2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76441 MGI:1923691
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kif6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319991 MGI:1098238
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 4 Proteins

name	EG668470 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668470 MGI:3644391
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Rftn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76438 MGI:1923688
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG668475 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668475 MGI:3644386
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	EG628747 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:628747 MGI:3648042
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	LOC100043818 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043818
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Dazl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13164 MGI:1342328
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trem1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142362336 GeneID:58217 MGI:1930005
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : triggering receptor expressed on myeloid cells 1 transcript_id : NM_021406.3

name	Trem3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142378895 GeneID:58218 MGI:1930003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : triggering receptor expressed on myeloid cells 3 transcript_id : NM_021407.2

name	Treml4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27369889 GeneID:224840 MGI:1923239
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : triggering receptor expressed on myeloid cells-like 4 transcript_id : NM_172623.1

name	Treml4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76677892 GeneID:224840 MGI:1923239
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : triggering receptor expressed on myeloid cells-like 4 transcript_id : NM_001033922.1

name	Treml2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133908635 GeneID:328833 MGI:2147038
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : triggering receptor expressed on myeloid cells-like 2 transcript_id : NM_001033405.2

name	B430306N03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802088 GeneID:320148 MGI:2443478
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA B430306N03 gene transcript_id : NM_177083.3

name	Trem2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981415 GeneID:83433 MGI:1913150
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : triggering receptor expressed on myeloid cells 2 transcript_id : NM_031254.2

name	Treml1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037246 GeneID:71326 MGI:1918576
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : triggering receptor expressed on myeloid cells-like 1 transcript_id : NM_027763.1

name	Nfya (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754847 GeneID:18044 MGI:97316
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear transcription factor-Y alpha transcript_id : NM_010913.1

name	AI314976 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382757 GeneID:106821 MGI:2146818
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI314976 transcript_id : NM_207219.3

name	Apobec2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803136 GeneID:11811 MGI:1343178
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : apolipoprotein B editing complex 2 transcript_id : NM_009694.2

name	Bzrpl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368798 GeneID:70026 MGI:1917276
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : benzodiazapine receptor, peripheral-like 1 transcript_id : NM_027292.2

name	Unc5cl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:65301485 GeneID:76589 MGI:1923839
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : unc-5 homolog C (C. elegans)-like transcript_id : NM_152823.3

name	Lrfn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388558 GeneID:70530 MGI:1917780
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat and fibronectin type III domain containing 2 transcript_id : NM_027452.2

name	1700008K24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268866 GeneID:69311 MGI:1916561
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 26 ESTs product : RIKEN cDNA 1700008K24 gene transcript_id : XM_001481104.1

name	Mocs1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:30524915 GeneID:56738 MGI:1928904
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : molybdenum cofactor synthesis 1 transcript_id : NM_020042.1

name	Daam2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116089317 GeneID:76441 MGI:1923691
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dishevelled associated activator of morphogenesis 2 transcript_id : NM_001008231.2

name	Kif6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268868 GeneID:319991 MGI:1098238
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 4 Proteins product : kinesin family member 6 transcript_id : XM_001001635.2

name	EG668470 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94402036 GeneID:668470 MGI:3644391
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : predicted gene, EG668470 transcript_id : XM_001001648.1

name	Rftn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130664 GeneID:76438 MGI:1923688
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : raftlin lipid raft linker 1 transcript_id : NM_181397.2

name	EG628747 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268734 GeneID:628747 MGI:3648042
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : predicted gene, EG628747 transcript_id : XM_893520.2

name	Dazl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384107 GeneID:13164 MGI:1342328
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : deleted in azoospermia-like transcript_id : NM_010021.3

name	Trem1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946760 CCDS:CCDS28860.1 GeneID:58217 MGI:1930005
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : triggering receptor expressed in monocytes 1 product : triggering receptor expressed on myeloid cells 1 protein_id : NP_067381.1

name	Trem3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946762 CCDS:CCDS28861.1 GeneID:58218 MGI:1930003
definition	GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : triggering receptor expressed on monocytes 3 product : triggering receptor expressed on myeloid cells 3 protein_id : NP_067382.1

name	Treml4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369890 CCDS:CCDS28862.1 GeneID:224840 MGI:1923239
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2; IG-like domain containing protein IDCP1c product : triggering receptor expressed on myeloid cells-like 4 isoform 2 protein_id : NP_766211.1

name	Treml4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:76677893 GeneID:224840 MGI:1923239
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; IG-like domain containing protein IDCP1c product : triggering receptor expressed on myeloid cells-like 4 isoform 1 protein_id : NP_001029094.1

name	Treml2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133908636 GeneID:328833 MGI:2147038
definition	codon_start : 1 note : trem-like transcript 2 product : triggering receptor expressed on myeloid cells-like 2 protein_id : NP_001028577.2

name	B430306N03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893001 CCDS:CCDS28864.1 GeneID:320148 MGI:2443478
definition	codon_start : 1 product : hypothetical protein LOC320148 protein_id : NP_796057.1

name	Trem2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13994125 CCDS:CCDS28865.1 GeneID:83433 MGI:1913150
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence ISS] codon_start : 1 note : triggering receptor expressed on myeloid cells 2c; triggering receptor expressed on myeloid cells 2a; triggering receptor expressed on myeloid cells 2b product : triggering receptor expressed on myeloid cells 2 protein_id : NP_112544.1

name	Treml1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037247 CCDS:CCDS28866.1 GeneID:71326 MGI:1918576
definition	GO_component : GO:0009986 - cell surface [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence TAS] GO_process : GO:0009968 - negative regulation of signal transduction [Evidence TAS] codon_start : 1 product : triggering receptor expressed on myeloid cells-like 1 protein_id : NP_082039.1

name	Nfya (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754848 CCDS:CCDS28867.1 GeneID:18044 MGI:97316
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0016563 - transcriptional activator activity [Evidence IDA] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : nuclear transcription factor-Y alpha protein_id : NP_035043.1

name	AI314976 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625732 GeneID:106821 MGI:2146818
definition	codon_start : 1 product : hypothetical protein LOC106821 protein_id : NP_997102.2

name	Apobec2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753098 CCDS:CCDS28868.1 GeneID:11811 MGI:1343178
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016814 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003969 - RNA editase activity [Evidence IMP]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006381 - mRNA editing [Evidence IMP]; GO:0006397 - mRNA processing [Evidence IEA] codon_start : 1 product : apolipoprotein B editing complex 2 protein_id : NP_033824.1

name	Bzrpl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229096 CCDS:CCDS28869.1 GeneID:70026 MGI:1917276
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 product : benzodiazapine receptor, peripheral-like 1 protein_id : NP_081568.1

name	Unc5cl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:65301486 CCDS:CCDS28870.1 GeneID:76589 MGI:1923839
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : ZU5 and death domain-containing inhibitor of NF-kB product : unc-5 homolog C (C. elegans)-like protein_id : NP_690036.3

name	Lrfn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037213 CCDS:CCDS28871.1 GeneID:70530 MGI:1917780
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : leucine rich repeat and fibronectin type III domain containing 2 protein_id : NP_081728.1

name	1700008K24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268867 GeneID:69311 MGI:1916561
definition	codon_start : 1 product : hypothetical protein LOC69311 protein_id : XP_001481154.1

name	Mocs1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30524916 GeneID:56738 MGI:1928904
definition	codon_start : 1 note : protein B is encoded by transcript variant 1; molybdenum cofactor synthesis-step 1 proteins A and B product : molybdenum cofactor synthesis 1 protein B protein_id : NP_064426.1

name	Daam2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116089318 GeneID:76441 MGI:1923691
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005488 - binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0017048 - Rho GTPase binding [Evidence IEA] GO_process : GO:0030036 - actin cytoskeleton organization and biogenesis [Evidence IEA]; GO:0008150 - biological_process [Evidence ND]; GO:0016043 - cell organization and biogenesis [Evidence IEA] codon_start : 1 product : dishevelled associated activator of morphogenesis 2 protein_id : NP_001008232.2

name	Kif6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268869 GeneID:319991 MGI:1098238
definition	codon_start : 1 note : overriding stop codons product : kinesin family member 6 protein_id : XP_001001635.2 transl_except : (pos:50042863..50042865,aa:OTHER)

name	EG668470 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94402037 GeneID:668470 MGI:3644391
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001001648.1

name	Rftn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859813 CCDS:CCDS28873.1 GeneID:76438 MGI:1923688
definition	codon_start : 1 product : raft-linking protein protein_id : NP_852062.1

name	EG628747 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268735 GeneID:628747 MGI:3648042
definition	codon_start : 1 product : hypothetical protein protein_id : XP_898613.2

name	Dazl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542549 GeneID:13164 MGI:1342328
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0003730 - mRNA 3'-UTR binding [Evidence IDA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003723 - RNA binding [Evidence IEA]; GO:0008494 - translation activator activity [Evidence IDA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007281 - germ cell development [Evidence IMP]; GO:0048477 - oogenesis [Evidence IEA]; GO:0045836 - positive regulation of meiosis [Evidence IMP]; GO:0045948 - positive regulation of translational initiation [Evidence IDA]; GO:0006417 - regulation of protein biosynthesis [Evidence IEA]; GO:0006445 - regulation of translation [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : deleted in azoospermia-like protein_id : NP_034151.2

name	LOC100043419 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043419
definition	number : 2 pseudo : _no_value

name	LOC672972 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672972
definition	number : 4 pseudo : _no_value

name	LOC672972 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672972
definition	number : 3 pseudo : _no_value

name	LOC672972 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672972
definition	number : 2 pseudo : _no_value

name	LOC672972 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672972
definition	number : 1 pseudo : _no_value

name	EG668475 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668475
definition	number : 1 pseudo : _no_value

name	LOC100043818 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043818
definition	number : 1 pseudo : _no_value

clone name	MSMg01-279A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-205I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-091M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-449L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-305L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-211L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-155M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016C20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085M24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-217M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105C20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-332H22
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-232H21.b	B6Ng01-232H21.g
ACC	GA044819	GA044820
length	889	1,119
definition	B6Ng01-232H21.b	B6Ng01-232H21.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(49,313,887 - 49,314,775)	(49,482,811 - 49,483,935)
sequence	gaattcatagggagcagtggggggctgttttggggtagcactgtgtctgg gggatagaacgcttgtctgatgtgctgggaactccaggttcttccctcgg gctggaccagcaggtggggtggaaagcctgcttggaccacacgactgttg ggctgtttctctgttaaaatggtcttctctcagtttcctctcagtgccca aggctctttttgctatgtgcaggtgtggacagaacagttcataagtctac ttaagaacaagcaggtgacagacactttcacaaagattgtcacatggaag gtagggaaacagaaagaaaccttcagagatgttgggtaggtgacttctac ccagggacatctcatgtctgtggactccagagcctgcgcactggaacttg atgctggtcgttcccagccagggttgaaagaggatgtgatctatggaagg tgtttctgtggacacctgaagttatttgcaaaatagtgcacggggaacat gtgtgcagaacctttggggaacaggatctttgcctttctgagatacagca atggggtgcagattctgggatccacaccaccagtcccctgagaccagagt ccctctaatggccacctattcattcagcaaatgttttctgaacaccaagt accatcctggagtctagggagcatcaaataccatcctaggggaaaaggag caagaaacgggtgattgatttataggagttttctagaaatgtgagtgaag accccacagaggctgaagtcatccagacactctcctatcccccacaccag ggcccagcttccctcctcctcccacccacagccccacactattaatggaa gggaggctttaagctgtagaggggagggagaggagatct	gaattctcagatagtcaaagggactggaaggttcattgtgaggtgaaact gtctttacaaacatggtccccccaccaccaagtgtgtcacacagtagccc ttagcaatttaaaatgtctacttgttctagttaacagggcatctacttca gattcctgcccagaactcagattttctatgatttattaaattaatgagca tctagaggggatttcccagtatatctggtcacatcagaaagatgtaggtg atgattttgtcatttatcagctctagtgctggtcagagctaccagttcag ctttctgagttgacatccctgccaggagtgactccgcccatgtgatctcg atgtttgagaacactgctgacccagcatacctctgtccatcttgaatgaa gctgttgtcattggcgaaccaagtttcctctgcatctatcaagggggcag cctgaacatctggtctggtcccattgaagtgggccaaaatgtctgagaaa tcatacagaggcacatggaggtctaggtcaggcagcagggtagctgggct tagggcaactgggtcctgaaaagttattctgggagcatttaagaggagag actagtaatgaatcattctagccttggtgatggccaggctttggcctagt gacagtttgtcagcatggttgactaggaggtccatggctgtgatgatgta cagttgcctctggcaactgggtctaatttctttgacaggtaggtcactga ctggtgccaggactgagagtctgagtgagtatcccttttactgtcttaga tttctcatccataaagagatggaaaaggcttagtcacttttggcaacatc aagctggtgtaggaaatttatttctggctttggaactacctctgaccttc tctaatatagatcccctggttctagagaggtcatcttgtgggttggtaga gtagggccttcttagtggaggttcgatagttcaaatttcccagggctccc aagagatcctgggtctctctagctttctgtttgtttctgctgcacaggag gccatttataaactgtccaaagagactttatcttaggtttagaaagaccg aggttacgctctcattatc
quality values	Open. Hide. 58 33 52 35 62 31 27 62 54 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 19 22 28 23 23 19 23 23 23 25 25 24 28 38 46 62 59 62 62 62 62 62 62 62 59 49 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 41 40 28 28 28 31 46 46 48 43 33 40 51 62 62 62 62 62 62 62 54 42 62 62 62 62 62 62 62 62 62 59 62 62 59 59 62 62 62 62 59 59 62 62 62 62 62 62 54 62 62 59 56 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 56 56 62 62 62 62 62 62 59 59 54 62 56 48 56 56 48 48 48 38 30 62 62 62 54 62 62 59 56 56 35 54 50 56 56 54 43 54 48 43 59 51 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 59 62 62 59 59 62 56 54 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 59 59 59 59 59 62 59 51 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 59 62 62 56 59 56 62 59 59 62 59 62 62 59 59 59 59 62 59 56 59 62 62 62 62 59 56 62 62 59 59 45 62 51 56 62 59 62 62 59 62 59 59 62 62 56 62 59 56 62 59 62 59 59 62 59 62 62 62 59 56 56 56 62 62 62 62 56 56 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 44 62 62 56 54 54 56 56 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 56 56 56 56 54 49 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 42 54 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 52 52 52 52 52 42 54 52 43 52 52 52 62 62 62 62 52 62 52 52 52 40 49 58 58 58 58 54 54 52 46 46 52 54 54 52 54 54 58 48 54 54 52 48 52 50 48 52 52 58 58 58 58 58 58 58 58 54 52 58 58 58 52 58 58 58 58 42 54 41 36 41 52 52 41 36 31 39 41 41 42 42 52 52 41 39 47 48 58 37 51 48 48 49 40 58 48 51 51 49 49 51 53 45 32 58 58 58 42 38 45 50 44 47 45 49 58 58 47 42 58 58 46 41 50 54 58 58 58 58 58 38 58 58 58 49 58 51 58 46 42 33 37 37 25 35 37 28 43 40 37 42 53 35 31 43 50 58 46 50 41 33 47 43 18 58 58 46 40 49 22 33 39 32 49 50 49 41 40 25 39 50 39 37 42 42 18 54 54 54 54 54 54 44 38 44 49 31 52 35 49 37 52 41 42 39 23 33 54 49 47 34 18 28 29 26 16 54 28 37 53 53 34 44 49 14 6 33 36 22 37 31 37 32 46 54 36 35 47 37 41 51 35 51 33 31 47 30 30 15 38 36 36 31 34 40 32 46 8 40 32 47 32 51 53 33 34 37 34 39 22 40 26 34 25 19 21 30 53 35 53 34 25 31 31 36 21 30 27 32 24 24 29 30 14 9 23 24 51 41 20 40 20 31 26 31 32 51 28 51 34 27 28 34 22 35 38 42 32 37 28 25 26 37 12 16 32 30 20 33 40 29 40 28 31 31 31 32 28 18 24 22 38 31 34 28 14 28 6 46 13 6 9 46 21 21 41 41 25 30 27 31 36 32 30 24 19 37 35 46 46 19 32 25 41 24 24 13 18 17 18 20 7 21 21 18 10	Open. 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Alignment Information

BAC End 1

BAC End 2

seq1: chr17_49313887_49314775
seq2: B6Ng01-232H21.b_44_932

seq1  GAATTCATAGGGAGCAGTGGGGGGCTGTTTTGGGGTAGCACTGTGTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGGAGCAGTGGGGGGCTGTTTTGGGGTAGCACTGTGTCTGG  50

seq1  GGGATAGAACGCTTGTCTGATGTGCTGGGAACTCCAGGTTCTTCCCTCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGAACGCTTGTCTGATGTGCTGGGAACTCCAGGTTCTTCCCTCGG  100

seq1  GCTGGACCAGCAGGTGGGGTGGAAAGCCTGCTTGGACCACACGACTGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACCAGCAGGTGGGGTGGAAAGCCTGCTTGGACCACACGACTGTTG  150

seq1  GGCTGTTTCTCTGTTAAAATGGTCTTCTCTCAGTTTCCTCTCAGTGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTCTCTGTTAAAATGGTCTTCTCTCAGTTTCCTCTCAGTGCCCA  200

seq1  AGGCTCTTTTTGCTATGTGCAGGTGTGGACAGAACAGTTCATAAGTCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTTTTTGCTATGTGCAGGTGTGGACAGAACAGTTCATAAGTCTAC  250

seq1  TTAAGAACAAGCAGGTGACAGACACTTTCACAAAGATTGTCACATGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACAAGCAGGTGACAGACACTTTCACAAAGATTGTCACATGGAAG  300

seq1  GTAGGGAAACAGAAAGAAACCTTCAGAGATGTTGGGTAGGTGACTTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGAAACAGAAAGAAACCTTCAGAGATGTTGGGTAGGTGACTTCTAC  350

seq1  CCAGGGACATCTCATGTCTGTGGACTCCAGAGCCTGCGCACTGGAACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGACATCTCATGTCTGTGGACTCCAGAGCCTGCGCACTGGAACTTG  400

seq1  ATGCTGGTCGTTCCCAGCCAGGGTTGAAAGAGGATGTGATCTATGGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGTCGTTCCCAGCCAGGGTTGAAAGAGGATGTGATCTATGGAAGG  450

seq1  TGTTTCTGTGGACACCTGAAGTTATTTGCAAAATAGTGCACGGGGAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGTGGACACCTGAAGTTATTTGCAAAATAGTGCACGGGGAACAT  500

seq1  GTGTGCAGAACCTTTGGGGAACAGGATCTTTGCCTTTCTGAGATACAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAGAACCTTTGGGGAACAGGATCTTTGCCTTTCTGAGATACAGCA  550

seq1  ATGGGGTGCAGATTCTGGGATCCACACCACCAGTCCCCTGAGACCAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTGCAGATTCTGGGATCCACACCACCAGTCCCCTGAGACCAGAGT  600

seq1  CCCTCTAATGGCCACCTATTCATTCAGCAAATGTTTTCTGAACACCAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTAATGGCCACCTATTCATTCAGCAAATGTTTTCTGAACACCAAGT  650

seq1  ACCATCCTGGAGTCTAGGGAGCATCAAATACCATCCTAGGGGAAAAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCTGGAGTCTAGGGAGCATCAAATACCATCCTAGGGGAAAAGGAG  700

seq1  CAAGAAACGGGTGATTGATTTATAGGAGTTTTCTAGAAATGTGAGTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAACGGGTGATTGATTTATAGGAGTTTTCTAGAAATGTGAGTGAAG  750

seq1  ACCCCACAGAGGCTGAAGTCATCCAGACACTCTCCTATCCCCCACACCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACAGAGGCTGAAGTCATCCAGACACTCTCCTATCCCCCACACCAG  800

seq1  GGCCCAGCTTCCCTCCTCCTCCCACCCACAGCCCCACACTATTAATGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCTTCCCTCCTCCTCCCACCCACAGCCCCACACTATTAATGGAA  850

seq1  GGGAGGCTTTAAGCTGTAGAGGGGAGGGAGAGGAGATCT  889
      |||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCTTTAAGCTGTAGAGGGGAGGGAGAGGAGATCT  889

seq1: chr17_49482811_49483935
seq2: B6Ng01-232H21.g_66_1184 (reverse)

seq1  GATAAT-AGAGCGTAACTTTCTGTCTTTCTAAAACCTAAAGATAAAGTCT  49
      |||||| ||||||||||  || |||||||| |||||| ||||||||||||
seq2  GATAATGAGAGCGTAAC-CTCGGTCTTTCT-AAACCT-AAGATAAAGTCT  47

seq1  CTTT-GACAGTTTATAAATGGCCTCCTTGGTGCAGCAGAAAACAAACAGA  98
      |||| ||||||||||||||||||||||  ||||||||| |||||||||||
seq2  CTTTGGACAGTTTATAAATGGCCTCCT--GTGCAGCAG-AAACAAACAGA  94

seq1  AAAGCCTAGAGGAGACCCAGGATCTCTTGGGAGCCCTGGGAAATTTGAAC  148
      ||   ||||| |||||||||||||||||||||||||||||||||||||||
seq2  AA--GCTAGA-GAGACCCAGGATCTCTTGGGAGCCCTGGGAAATTTGAAC  141

seq1  TATCGAACCTCCACTAAGAAGGCCCTACTCTACCAA-CCAC-AGGTGACC  196
      |||||||||||||||||||||||||||||||||||| |||| || |||||
seq2  TATCGAACCTCCACTAAGAAGGCCCTACTCTACCAACCCACAAGATGACC  191

seq1  TCTCTAGAACCAGGGGATCTATATTAAGAGAAGGTCAGAGGTAGTTCCAA  246
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTCTAGAACCAGGGGATCTATATT-AGAGAAGGTCAGAGGTAGTTCCAA  240

seq1  AGCCAGAAATAAATTT-CTACACCAGCTTTGATGTTGCCAAAAGTGACTA  295
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  AGCCAGAAATAAATTTCCTACACCAGC-TTGATGTTGCCAAAAGTGACTA  289

seq1  AGCCTTTTCCATCTCTTTATGGATGAGAAATCTAAGACAGTAAAAGGGAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTTCCATCTCTTTATGGATGAGAAATCTAAGACAGTAAAAGGGAT  339

seq1  ACTCACTCAGACTCTCAGTCCTGGCACCAGTCAGTGACCTACCTGTCAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCAGACTCTCAGTCCTGGCACCAGTCAGTGACCTACCTGTCAAA  389

seq1  GAAATTAGACCCAGTTGCCAGAGGCAACTGTACATCATCACAGCCATGGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAGACCCAGTTGCCAGAGGCAACTGTACATCATCACAGCCATGGA  439

seq1  CCTCCTAGTCAACCATGCTGACAAACTGTCACTAGGCCAAAGCCTGGCCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAGTCAACCATGCTGACAAACTGTCACTAGGCCAAAGCCTGGCCA  489

seq1  TCACCAAGGCTAGAATGATTCATTACTAGTCTCTCCTCTTAAATGCTCCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAGGCTAGAATGATTCATTACTAGTCTCTCCTCTTAAATGCTCCC  539

seq1  AGAATAACTTTTCAGGACCCAGTTGCCCTAAGCCCAGCTACCCTGCTGCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAACTTTTCAGGACCCAGTTGCCCTAAGCCCAGCTACCCTGCTGCC  589

seq1  TGACCTAGACCTCCATGTGCCTCTGTATGATTTCTCAGACATTTTGGCCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAGACCTCCATGTGCCTCTGTATGATTTCTCAGACATTTTGGCCC  639

seq1  ACTTCAATGGGACCAGACCAGATGTTCAGGCTGCCCCCTTGATAGATGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATGGGACCAGACCAGATGTTCAGGCTGCCCCCTTGATAGATGCA  689

seq1  GAGGAAACTTGGTTCGCCAATGACAACAGCTTCATTCAAGATGGACAGAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACTTGGTTCGCCAATGACAACAGCTTCATTCAAGATGGACAGAG  739

seq1  GTATGCTGGGTCAGCAGTGTTCTCAAACATCGAGATCACATGGGCGGAGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTGGGTCAGCAGTGTTCTCAAACATCGAGATCACATGGGCGGAGT  789

seq1  CACTCCTGGCAGGGATGTCAACTCAGAAAGCTGAACTGGTAGCTCTGACC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGGCAGGGATGTCAACTCAGAAAGCTGAACTGGTAGCTCTGACC  839

seq1  AGCACTAGAGCTGATAAATGACAAAATCATCACCTACATCTTTCTGATGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTAGAGCTGATAAATGACAAAATCATCACCTACATCTTTCTGATGT  889

seq1  GACCAGATATACTGGGAAATCCCCTCTAGATGCTCATTAATTTAATAAAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGATATACTGGGAAATCCCCTCTAGATGCTCATTAATTTAATAAAT  939

seq1  CATAGAAAATCTGAGTTCTGGGCAGGAATCTGAAGTAGATGCCCTGTTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAAATCTGAGTTCTGGGCAGGAATCTGAAGTAGATGCCCTGTTAA  989

seq1  CTAGAACAAGTAGACATTTTAAATTGCTAAGGGCTACTGTGTGACACACT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACAAGTAGACATTTTAAATTGCTAAGGGCTACTGTGTGACACACT  1039

seq1  TGGTGGTGGGGGGACCATGTTTGTAAAGACAGTTTCACCTCACAATGAAC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGGGGGGACCATGTTTGTAAAGACAGTTTCACCTCACAATGAAC  1089

seq1  CTTCCAGTCCCTTTGACTATCTGAGAATTC  1125
      ||||||||||||||||||||||||||||||
seq2  CTTCCAGTCCCTTTGACTATCTGAGAATTC  1119

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information