BAC Information

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BAC

Clone NameB6Ng01-232J14
Chromosome7 (Build37)17 (Build37)
Map Location 125,282,070 - 125,282,25534,093,935 - 34,094,713
singlet/doubletsingletsinglet
Overlap gene2610207I05Rik
Upstream geneXylt1, LOC669758, Rps15a, Arl6ip1
Downstream geneLOC100043339, Syt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232J14.bB6Ng01-232J14.g
ACCGA044894GA044895
length826784
definitionB6Ng01-232J14.b B6Ng01-232J14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(125,282,070 - 125,282,255)(34,093,935 - 34,094,713)
sequence
gaattccataccaaaagcatagaaaatatcttcaatagaaaaaaaaaatt
tttttttgttttgtttttttgtttttttgagacagggtttctctgtatag
ccctggctgtcctggaactcactttgtagaccaggctggcctcgaactca
gaaatcctcctgcctctgcctcccaagtgctgggattaaaaggtgtgcgc
caccacgcctggcatcttcaataaaatctaaaaaaacattcccaactcta
gagggaaaaggccccacccacccaccccatccagacataagggaatgaca
gaaccaaccaaataaaggagaagggaaaaatcaagtgatggtcgacccac
taaatagatcaaagaacaaatactgaaagctggaagagagaaggaccata
cacacgctgtcagctagcagctgatttcttttccaatggaaactgaaagc
cagagcgtctcgggaggatgtttcaagttccgagagaccgcagctgctag
cctagacaactacaccaaacaaaatcttaactgggggaggaatgaaactt
ccctgtcagaagcagactaaaggacatatgaccacacagacagctctaca
gaggatgatagagtactgtaggcaggaaagaagggcatcttcgaggctac
ggggcaaattaggaagatgccctatgagaacacggcccacagaatcaact
cagcagggctcatagggcttgcagagactggagcgacactcatgaactct
atgagggtccgagctggggtcctctgcatacatgttttggttaggtggta
tttctttgtggtgtgcttggcgctct
gaattcatcttggatgaagtggatggtaagtgctgacatggggtgggagc
aaagtagacccctttattctttagaaatatattacatgaccccagtagat
taccctctatggtttctttcttttgtatgtgtgtgtgtttttatttttaa
tttatttttatttttttggttttttttcgagacagggtttctctgtagct
ttggctgtcctggaactcactctgtagaccaggctggcctcggactcaga
aatccgcctgcctctgcctcccaagtgctgggattaaaggcgtgcaccac
caccccccggctggcttttttcttaatgtacagataaagtttaatccatg
agttgagaaggcttaacttctaatttaggaatagtaagaaatgaacagta
cgagtcgaatagtcacagcaatacactataataaaatcgcagcatcactt
tttcccccctgggactattgttgagtaagaatacagcctggttgaacata
catacgcagacagctaagactgagtgactgggaggcaggcacagcacaca
ccatagattaacggagcaaagatgtttcagatccaagcccaggcgagagg
ttctctagcttctcagaatgccacacattttagatcttacaagccacact
tttggaaatcccctttttaatattttccatctgtggtcgagtagaccatg
aggagcagaaaacagcaggaagtccccaccgggcaaagcagctgtgccct
ataactggagagggtgggggctgggagggaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_125282070_125282255
seq2: B6Ng01-232J14.b_83_275

seq1  -AAAAAAAAATTTTTTTTGTTTTG---------TTTTTCAAGACAGGGTT  40
       |||||||| ||||||||||||||         |||||  ||||||||||
seq2  AAAAAAAAATTTTTTTTTGTTTTGTTTTTTTGTTTTTTTGAGACAGGGTT  50

seq1  TCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGG  90
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGG  100

seq1  CCTGGAACTCAGAAATCTGCCTGCCTCTGCCTACCGAGTGCTGGGATT-A  139
      ||| |||||||||||||  ||||||||||||| || |||||||||||| |
seq2  CCTCGAACTCAGAAATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAA  150

seq1  AAGGTGTGCACCACCACGCCCGGCTAAGCTAAGAATAAAATTCTAAA  186
      ||||||||| |||||||||| |||  | ||   ||||||| ||||||
seq2  AAGGTGTGCGCCACCACGCCTGGC--ATCT-TCAATAAAA-TCTAAA  193

seq1: chr17_34093935_34094713
seq2: B6Ng01-232J14.g_67_850

seq1  GAATTCATCTTGGATGAAGTGGATGGTAAGTGCTGACATGGGGTGGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTGGATGAAGTGGATGGTAAGTGCTGACATGGGGTGGGAGC  50

seq1  AAAGTAGACCCCTTTATTCTTTAGAAATATATTACATGACCCCAGTAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGACCCCTTTATTCTTTAGAAATATATTACATGACCCCAGTAGAT  100

seq1  TACCCTCTATGGTTTCTTTCTTTTGTATGTGTGTGTGTTTTTATTTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCTATGGTTTCTTTCTTTTGTATGTGTGTGTGTTTTTATTTTTAA  150

seq1  TTTATTTTTATTTTTTTGGTTTTTTTTCGAGACAGGGTTTCTCTGTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTATTTTTTTGGTTTTTTTTCGAGACAGGGTTTCTCTGTAGCT  200

seq1  TTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGGACTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGGACTCAGA  250

seq1  AATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCAC  300

seq1  CACCCCCCGGCTGGCTTTTTTCTTAATGTACAGATAAAGTTTAATCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCCGGCTGGCTTTTTTCTTAATGTACAGATAAAGTTTAATCCATG  350

seq1  AGTTGAGAAGGCTTAACTTCTAATTTAGGAATAGTAAGAAATGAACAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGAAGGCTTAACTTCTAATTTAGGAATAGTAAGAAATGAACAGTA  400

seq1  CGAGTCGAATAGTCACAGCAATACACTATAATAAAATCGCAGCATCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCGAATAGTCACAGCAATACACTATAATAAAATCGCAGCATCACTT  450

seq1  TTTCCCCTTTGGGACTATTGTTGAGTAAGAATACAGCCTGGTTGAACATA  500
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCCCTGGGACTATTGTTGAGTAAGAATACAGCCTGGTTGAACATA  500

seq1  CATACGCAGACAGCTAAGACTGAGTGACTGGGAGGCAGGCACAGCACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGCAGACAGCTAAGACTGAGTGACTGGGAGGCAGGCACAGCACACA  550

seq1  CCATAGATTAACGGAGCAAAGATGTTTCAGATCCAAGCCCAGGCGAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGATTAACGGAGCAAAGATGTTTCAGATCCAAGCCCAGGCGAGAGG  600

seq1  TTCTCTAGCTTCTCAGAATGCCACACATTTTAGATCTTACAAGCCACAC-  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCTCTAGCTTCTCAGAATGCCACACATTTTAGATCTTACAAGCCACACT  650

seq1  TTTGGAAATCCCC-TTTTAATATTTTCCATCTGTGGTCGAGTAGACCATG  698
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAATCCCCTTTTTAATATTTTCCATCTGTGGTCGAGTAGACCATG  700

seq1  AGGAGCAG-AAACAGCAGGAAGT-CCCACCGGGCAAAGCAGCTGTG-CCT  745
      |||||||| |||||||||||||| |||||||||||||||||||||| |||
seq2  AGGAGCAGAAAACAGCAGGAAGTCCCCACCGGGCAAAGCAGCTGTGCCCT  750

seq1  ATAACTGGAGAGGGTGGGGGCTGGGAGGGAAGGG  779
      ||||||||||||||||||||||||||||||||||
seq2  ATAACTGGAGAGGGTGGGGGCTGGGAGGGAAGGG  784