BAC Information

Click to search

BAC

Clone NameB6Ng01-233A08
Chromosome17 (Build37)3 (Build37)
Map Location 21,905,228 - 21,906,33615,515,433 - 15,516,457
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneV1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476
Downstream gene4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233A08.bB6Ng01-233A08.g
ACCGA045201GA045202
length1,1131,110
definitionB6Ng01-233A08.b B6Ng01-233A08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,905,228 - 21,906,336)(15,515,433 - 15,516,457)
sequence
gaattccatagcacaactgtattcatgtcctggaagatgttccacggtga
taagatttctgacataattagtgattaattccaagggcacaccctacagc
aattcagcttatccctgtaccttcctgaacactcttttccctctggcagc
catcaggtggtatctactgtgcctcttccttgatgactctgccttgacat
tgcctagaatgtttagcatactgacattccatataagcatttgtgttcag
agttgtactattctatctctatattgcttccaggtaggttgcaagtgatc
gctgttctcacacaaaggtatacatgcaacttagaaaagaagtttgcctt
gagaagaggcccaagttggacattcccctcagtgaaaagtagaaagcctt
cttagacaatgatgagaatgtctgtatgtagatctaatgacaaatttacc
ctgttgagaaaaaagaaaaacctatgatatttgccaaacagattgaccca
ccacacaatgagtctgctctccagtatagcatgacacacatggtaagtac
atgtactgtatctttcaagtagaatgaaatgaaatgtgaccaatcaacac
ctagaaatgctgacagcaatgtacaatgatggaaaacttaagggccctca
aaccttttcccaagaagagaccgatctgagataaatatgactgtgttcat
atttatcctgagagcacaccatcatctcctgacctggatcagtatagaaa
cttttcccctgtagtggggcatataaagtttgcaagtctaatgggcctcc
ctttccagtgatggccaactaggccatcttttgatacatatgcagctaga
gacaagagctccggggtactggttagttcatattgttgttccacctatag
ggttgcagttccctttagctccttgggtactttctctagctcctccattg
gggaccgtgtgaccatatagtccttttcctgagctgtgaagttgtgatgc
tcttattaaattctgcattcttgccttacaggtgccatgtgaagaacaat
gctggagttcatttggtgggtgctcctcccacttcaagggccacatcatg
gtctccagtgcct
gaattcatacaggagagaagccttacaaatgtagtgaatgtgaaaaatac
ttttcccacaaaggcagtcttagtattcatcagagaattcatacaggaga
gaaaccttacaaatgtagtgagtgtgacaaattctttacccaaaaaggca
gtcttaatgtccaccagagagttcatacaggagagaaaccttacaaatgt
agtgaatgtgacaaatgcttttcctataaaggagatcttagaaaacatca
gagaattcatacaggagaaagaaccttacaaatgtgaatgtgacatgtgc
tttacccaaaaattcaatcgtcatcttcatttgagaattcatacaggaga
gaagccttacaaatatactgaatgtgacaaatgctttagccagaaacaat
attagctcttatcagagaatgcacacagtagacaccttcacaaatgaaga
gaatgagaaaaatctgtttccaaggaagatcatcttagaattcatcagag
actacatataggagaaggaacttataagtatagtaaatgttcaaatcctt
tactgttggttcaccacttaaaatacatcaaagaatgcatccaggataaa
aaaaaaaaaaacttatgaatgtgatatataaggaaaggactttacccaaa
tttcagacctaagaaaatacctggttatttatattcagaaaaaagtgtcc
actggaaaaaaaaatggcatgtgcgttatccaagcggtattgtttgcaac
acttgaagctccacactagagaattattatatgtgtgaggaagttgggaa
cacatttaaataatcctcaaatcttaggaactacccagtgtttatgctga
gagaagctgaaaatgcgacaatgaaggaaatctttcattaaaagttttta
cttgttcactttcaaatatgtcatgatggagaagctagaagaatatggag
ttgtgtaagctttcctagagactgaaatgatcttatttcaagagagctgt
gaaatacatgcctcaaaaatagctaatgaaactgacagcatttctgtatt
gtttaactcaatgacatactcaattatacttcttaaaaagagaatttgac
caacctgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_21905228_21906336
seq2: B6Ng01-233A08.b_47_1159

seq1  GAATTCCATAGCACAACTGTATTCATGTCCTGGAAGATGTTCCACGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGCACAACTGTATTCATGTCCTGGAAGATGTTCCACGGTGA  50

seq1  TAAGATTTCTGACATAATTAGTGATTAATTCCAAGGGCACACCCTACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTCTGACATAATTAGTGATTAATTCCAAGGGCACACCCTACAGC  100

seq1  AATTCAGCTTATCCCTGTACCTTCCTGAACACTCTTTTCCCTCTGGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGCTTATCCCTGTACCTTCCTGAACACTCTTTTCCCTCTGGCAGC  150

seq1  CATCAGGTGGTATCTACTGTGCCTCTTCCTTGATGACTCTGCCTTGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGTGGTATCTACTGTGCCTCTTCCTTGATGACTCTGCCTTGACAT  200

seq1  TGCCTAGAATGTTTAGCATACTGACATTCCATATAAGCATTTGTGTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGAATGTTTAGCATACTGACATTCCATATAAGCATTTGTGTTCAG  250

seq1  AGTTGTACTATTCTATCTCTATATTGCTTCCAGGTAGGTTGCAAGTGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTACTATTCTATCTCTATATTGCTTCCAGGTAGGTTGCAAGTGATC  300

seq1  GCTGTTCTCACACAAAGGTATACATGCAACTTAGAAAAGAAGTTTGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCTCACACAAAGGTATACATGCAACTTAGAAAAGAAGTTTGCCTT  350

seq1  GAGAAGAGGCCCAAGTTGGACATTCCCCTCAGTGAAAAGTAGAAAGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGGCCCAAGTTGGACATTCCCCTCAGTGAAAAGTAGAAAGCCTT  400

seq1  CTTAGACAATGATGAGAATGTCTGTATGTAGATCTAATGACAAATTTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACAATGATGAGAATGTCTGTATGTAGATCTAATGACAAATTTACC  450

seq1  CTGTTGAGAAAAAAGAAAAACCTATGATATTTGCCAAACAGATTGACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAGAAAAAAGAAAAACCTATGATATTTGCCAAACAGATTGACCCA  500

seq1  CCACACAATGAGTCTGCTCTCCAGTATAGCATGACACACATGGTAAGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAATGAGTCTGCTCTCCAGTATAGCATGACACACATGGTAAGTAC  550

seq1  ATGTACTGTATCTTTCAAGTAGAATGAAATGAAATGTGACCAATCAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTGTATCTTTCAAGTAGAATGAAATGAAATGTGACCAATCAACAC  600

seq1  CTAGAAATGCTGACAGCAATGTACAATGATGGAAAACTTAAGGGCCCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATGCTGACAGCAATGTACAATGATGGAAAACTTAAGGGCCCTCA  650

seq1  AACCTTTTCCCAAGAAGAGACCGATCTGAGATAAATATGACTGTGTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTTCCCAAGAAGAGACCGATCTGAGATAAATATGACTGTGTTCAT  700

seq1  ATTTATCCTGAGAGCACACCATCATCTCCTGACCTGGATCAGTATAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCCTGAGAGCACACCATCATCTCCTGACCTGGATCAGTATAGAAA  750

seq1  CTTTTCCCCTGTAGTGGGGCATATAAAGTTTGCAAGTCTAATGGGCCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCCCTGTAGTGGGGCATATAAAGTTTGCAAGTCTAATGGGCCTCC  800

seq1  CTTTCCAGTGATGGCCAACTAGGCCATCTTTTGATACATATGCAGCTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGTGATGGCCAACTAGGCCATCTTTTGATACATATGCAGCTAGA  850

seq1  GACAAGAGCTCCGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAGCTCCGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAG  900

seq1  GGTTGCAGTTCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAGTTCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTG  950

seq1  GGGACCGTGTGACCCATATAGTCCTTTTCCTGAGCTGTGAAGTTGTGATG  1000
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGGACCGTGTGA-CCATATAGTCCTTTTCCTGAGCTGTGAAGTTGTGATG  999

seq1  CTCTTATTAAATTCTGCATTCTTGCCTTACAGGTGCCATGTGAAGAACAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATTAAATTCTGCATTCTTGCCTTACAGGTGCCATGTGAAGAACAA  1049

seq1  TGCT-GAGTTCATTTG--TGGTGCT-CTCCCACTTCAA-GGCCACATCAT  1095
      |||| |||||||||||   |||||| |||||||||||| |||||||||||
seq2  TGCTGGAGTTCATTTGGTGGGTGCTCCTCCCACTTCAAGGGCCACATCAT  1099

seq1  GGTCTCCAGTGCCT  1109
      ||||||||||||||
seq2  GGTCTCCAGTGCCT  1113

seq1: chr3_15515433_15516457
seq2: B6Ng01-233A08.g_145_1175

seq1  TCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAATGAATGTGACA  50
      |||||||||||||||||||||||||||||||||||| | ||| |||||||
seq2  TCAGAGAATTCATACAGGAGAGAAACCTTACAAATGTAGTGAGTGTGACA  50

seq1  ATTTCTTTACCCGAAAAGACAGTCTTAATGTCCACCAGAGAGTTCATACA  100
      | |||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  AATTCTTTACCCAAAAAGGCAGTCTTAATGTCCACCAGAGAGTTCATACA  100

seq1  GGAGAGAAACCTTATAAATGTAGTGAATGTGACAAATGCTTTTCCTATAA  150
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTTCCTATAA  150

seq1  AGGCAATCTTAGAAAACATCAGAGAATTCATACAGGAGAAAGAACCTTAC  200
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATCTTAGAAAACATCAGAGAATTCATACAGGAGAAAGAACCTTAC  200

seq1  AAATGTGAATGTGACGTGTGTTTTATCCTAAATTTCAATCG--ATCTTCA  248
      ||||||||||||||| |||| |||| || ||| ||||||||  |||||||
seq2  AAATGTGAATGTGACATGTGCTTTACCCAAAAATTCAATCGTCATCTTCA  250

seq1  TTAGAGAATTCATACAAGAGAGAAGCCTTACAAATATAATGAATGTGACA  298
      || ||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  TTTGAGAATTCATACAGGAGAGAAGCCTTACAAATATACTGAATGTGACA  300

seq1  AATACTTCAGCCAAAAACAATCTCAGCTCTTATCAGAGAATGCCTACAGT  348
      ||| ||| ||||| ||||||| | |||||||||||||||||||  |||||
seq2  AATGCTTTAGCCAGAAACAATATTAGCTCTTATCAGAGAATGCACACAGT  350

seq1  AGGCACTTTCACAAATGAAGTGAATGAGAAAAACCCGTTTCCAAGGAAGA  398
      || ||| ||||||||||||| |||||||||||| | ||||||||||||||
seq2  AGACACCTTCACAAATGAAGAGAATGAGAAAAATCTGTTTCCAAGGAAGA  400

seq1  TCATCTTAGAATTCATCAGAGACTATATATCGGAGAAGGAAATTATAAAT  448
      ||||||||||||||||||||||||| |||| |||||||||| |||||| |
seq2  TCATCTTAGAATTCATCAGAGACTACATATAGGAGAAGGAACTTATAAGT  450

seq1  GTAGTAAATGTTCAAATCCTTCAGTGTTCGTTCACCATTTAAAATACATG  498
       |||||||||||||||||||| | |||| |||||||| ||||||||||| 
seq2  ATAGTAAATGTTCAAATCCTTTACTGTTGGTTCACCACTTAAAATACATC  500

seq1  AAAGAATGCATTCAGGAT-TAAAAAAAAAAAACTTATGAATTTGATATAT  547
      ||||||||||| ||||||  ||||||||||||||||||||| ||||||||
seq2  AAAGAATGCATCCAGGATAAAAAAAAAAAAAACTTATGAATGTGATATAT  550

seq1  GAGGAAAGGTCTTTACCCAAATCTCAGACCTAAGAAAATACCTGGTTATT  597
       |||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  AAGGAAAGGACTTTACCCAAATTTCAGACCTAAGAAAATACCTGGTTATT  600

seq1  TATATTCAGAAAAAAGTGTCCACTGG-AAAAACTATGGCATGTGCTTTAT  646
      |||||||||||||||||||||||||| |||||  ||||||||||| ||||
seq2  TATATTCAGAAAAAAGTGTCCACTGGAAAAAAAAATGGCATGTGCGTTAT  650

seq1  ACCAGTGGTATTATTGGCAACACTTGAAGCTCCACACTAGAGAATTATTA  696
       | || |||||| || ||||||||||||||||||||||||||||||||||
seq2  CCAAGCGGTATTGTTTGCAACACTTGAAGCTCCACACTAGAGAATTATTA  700

seq1  TATATGCGAGGAAGTTGGGAAAACATTTAAATAATCCTCAAATTTTAGGA  746
      ||| || |||||||||||||| ||||||||||||||||||||| ||||||
seq2  TATGTGTGAGGAAGTTGGGAACACATTTAAATAATCCTCAAATCTTAGGA  750

seq1  GCAACCCAGGGTTTATGCTCAGAGAAACTGAAAATGCAGCAATGAAGGAA  796
       | |||||| ||||||||| |||||| ||||||||||  |||||||||||
seq2  ACTACCCAGTGTTTATGCTGAGAGAAGCTGAAAATGCGACAATGAAGGAA  800

seq1  ATCTTTCATTAAAAGTTTTTACTTGTTCACTTTTAAATATGTCATGATGG  846
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATCTTTCATTAAAAGTTTTTACTTGTTCACTTTCAAATATGTCATGATGG  850

seq1  AGAAGCTAAAAGAATATGGAGTTGTATAAATTTTCCTGGAGACTGAAATG  896
      |||||||| |||||||||||||||| |||  |||||| ||||||||||||
seq2  AGAAGCTAGAAGAATATGGAGTTGTGTAAGCTTTCCTAGAGACTGAAATG  900

seq1  ATC-TATTTCAAAAAGAAGCTATGAAATACATGCCTC-AAAATAGCT-AT  943
      ||| |||||||| |   |||| ||||||||||||||| ||||||||| ||
seq2  ATCTTATTTCAAGA--GAGCTGTGAAATACATGCCTCAAAAATAGCTAAT  948

seq1  GAAACTGACAGCA-TTCTGTA-TGTTTAACTCAAATGAACATACTCCAAT  991
      ||||||||||||| ||||||| |||||||||| |||| ||||||| ||||
seq2  GAAACTGACAGCATTTCTGTATTGTTTAACTC-AATG-ACATACT-CAAT  995

seq1  TATACTTCTT-AAAAGAGGATTTGA-CAAACTGAGC  1025
      |||||||||| ||||||| |||||| ||| ||||||
seq2  TATACTTCTTAAAAAGAGAATTTGACCAACCTGAGC  1031