BAC Information

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BAC

Clone NameB6Ng01-233I03
Chromosome17 (Build37)
Map Location 89,701,196 - 89,831,528
singlet/doubletdoublet
Overlap geneLOC100043904
Upstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
Downstream geneLOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233I03.bB6Ng01-233I03.g
ACCGA045546GA045547
length1,1661,173
definitionB6Ng01-233I03.b B6Ng01-233I03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,701,196 - 89,702,343)(89,830,358 - 89,831,528)
sequence
gaattcacctttaatccgaggtttctggaataaaactccaatcagccgag
tttccttttatggtagagaagctctcctcaacatcctgactggtgcttgt
tttgtttgtgcctggagattgctctctgaggagagcaatttatatagaag
cagaataaagacaagacaataaaagaagagacaaaagcagaaaggatgga
agaagactctcccagggccaaatgactatgttacaggatttccaacagat
tttaccctgcttccttttggaccaccttagccctattctctgaagaaggg
acaatgtccttgctttctgtcttttgtaagtaggagtgagagaggtatct
gtgtgaatttagaaaggcacctggctttgttttctgacaaggtcttcatt
tttttatgtactcctccccaatttttaagtgcactgtccatttggccaat
ttgtttccgtgctcaccagtgatgaagacaggttgtctaagtggttccta
gaagaggcaatagtaacaaagcaagccctgacatgagctataagaaggaa
aagggctctgggagtgcctgactccatcagtttactcaccagctagcatt
ttaggtttacaaaaagacaataaaagaacactaggcatgttttttttttt
cttaaatttctggaaataagtggtagaagagaggtgacagtgtattgatc
cttttcttctgatattatgatggaagtgcagctaactttagaaaaaaaag
gggaagattcttcaaggaaactgtggcttattcagtgatctctgatcccc
acagcagttggcattcattcttccatgctagtgaaggaaactgtggctcc
taaaataaagatctagagattctgtcatttttcgacagtgatggggtagt
taagcacacagatgtggggggtgctgggagtagcaacagactagtattgt
gagtaggaatttgggagcccacaagaaccatctctgatactctaatagta
tctcccaggaaaggaggcttggaccaaagaatttgggtgagacagagaac
agaggctggggtcacaaggaacaagggttaaagagaactacgatcatcca
tcccttcgtctcaatttaaaacccgtagctcttcgataccaatggcgttg
gggacactctcctgaa

gaattcaccattccaattaacagccttatactgttcatggctttgtggta
gctaagggaattcatcttggaatacttcattacatgtttacattaaaaat
actttgagtatgggattgctaaagatgttttattgagagaaaatcttctg
atggtgtttggagtttaaagaaataaatctctcacaattgaactctcatg
tgccatgtgggagggatctaaattagttaattatacaaagaacagcagaa
aggacagaattagatccatgatactgagtcccagtaataagaaacttgag
gagaatatcaaaccctcttgcttagatatggcactatttctaaaatagtg
gaaaattttaagcagagctattacttcacatggaagagacctgaggtgct
ggcttcctgggccttggtccacttgtgagaatcctcgggttcactgttgt
tgtacttgcacagactaagtaccatcaaccacggttttctaaaaattaaa
atgctataataaagaaatagaggttataaaagtagattcttcacatttca
gaataaatgtttgttttgagtgacttttccacagctctcctgaaaggaat
atattaatctattaaattttaaaattattgcagtgagttataatttttgc
aaatccacaaatgtttctcttttaaaaacttctaaagtgcaatcacactt
ataaatgcacatttattataaatctgtcaacatatatgcagcacacataa
acactagtggcatccaagagcagacattcgcacatgggcacttaaccatg
tgtgcattcccaccctgaagcttcccttcaggatttaattaaagtgccaa
ttcgaaagactgatgatttctaggactaggtgctgaaacaagtaaataaa
aacgttgggtggcgtttttgacagctgatacgatgacaggagtgcattac
ccaagtttcacaagaataatcattctcattctacacataccttgaatctt
cttttctcttttctccctctctgctctgggagggggctgctgcttagaca
gagatcagatacgaagcagttatcttcttcaactctttctccacaaggaa
gcagggaaaatccctaagcctacttaccatattgtatggattgagaacct
ggcagaaaggcctagttttcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89701196_89702343
seq2: B6Ng01-233I03.b_44_1209

seq1  GAATTCACCTTTAATCCGAGGTTTCTGGAATAAAACTCCAATCAGCCGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTTAATCCGAGGTTTCTGGAATAAAACTCCAATCAGCCGAG  50

seq1  TTTCCTTTTATGGTAGAGAAGCTCTCCTCAACATCCTGACTGGTGCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTATGGTAGAGAAGCTCTCCTCAACATCCTGACTGGTGCTTGT  100

seq1  TTTGTTTGTGCCTGGAGATTGCTCTCTGAGGAGAGCAATTTATATAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTGCCTGGAGATTGCTCTCTGAGGAGAGCAATTTATATAGAAG  150

seq1  CAGAATAAAGACAAGACAATAAAAGAAGAGACAAAAGCAGAAAGGATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAAAGACAAGACAATAAAAGAAGAGACAAAAGCAGAAAGGATGGA  200

seq1  AGAAGACTCTCCCAGGGCCAAATGACTATGTTACAGGATTTCCAACAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACTCTCCCAGGGCCAAATGACTATGTTACAGGATTTCCAACAGAT  250

seq1  TTTACCCTGCTTCCTTTTGGACCACCTTAGCCCTATTCTCTGAAGAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCTGCTTCCTTTTGGACCACCTTAGCCCTATTCTCTGAAGAAGGG  300

seq1  ACAATGTCCTTGCTTTCTGTCTTTTGTAAGTAGGAGTGAGAGAGGTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTCCTTGCTTTCTGTCTTTTGTAAGTAGGAGTGAGAGAGGTATCT  350

seq1  GTGTGAATTTAGAAAGGCACCTGGCTTTGTTTTCTGACAAGGTCTTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAATTTAGAAAGGCACCTGGCTTTGTTTTCTGACAAGGTCTTCATT  400

seq1  TTTTTATGTACTCCTCCCCAATTTTTAAGTGCACTGTCCATTTGGCCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGTACTCCTCCCCAATTTTTAAGTGCACTGTCCATTTGGCCAAT  450

seq1  TTGTTTCCGTGCTCACCAGTGATGAAGACAGGTTGTCTAAGTGGTTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCGTGCTCACCAGTGATGAAGACAGGTTGTCTAAGTGGTTCCTA  500

seq1  GAAGAGGCAATAGTAACAAAGCAAGCCCTGACATGAGCTATAAGAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGCAATAGTAACAAAGCAAGCCCTGACATGAGCTATAAGAAGGAA  550

seq1  AAGGGCTCTGGGAGTGCCTGACTCCATCAGTTTACTCACCAGCTAGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTCTGGGAGTGCCTGACTCCATCAGTTTACTCACCAGCTAGCATT  600

seq1  TTAGGTTTACAAAAAGACAATAAAAGAACACTAGGCATGTTTTTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTTACAAAAAGACAATAAAAGAACACTAGGCATGTTTTTTTTTTT  650

seq1  CTTAAATTTCTGGAAATAAGTGGTAGAAGAGAGGTGACAGTGTATTGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATTTCTGGAAATAAGTGGTAGAAGAGAGGTGACAGTGTATTGATC  700

seq1  CTTTTCTTCTGATATTATGATGGAAGTGCAGCTAACTTTAGAAAAAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTCTGATATTATGATGGAAGTGCAGCTAACTTTAGAAAAAAAAG  750

seq1  GGGAAGATTCTTCAAGGAAACTGTGGCTTATTCAGTGATCTCTGATCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGATTCTTCAAGGAAACTGTGGCTTATTCAGTGATCTCTGATCCCC  800

seq1  ACAGCAGTTGGCATTCATTCTTCCATGCTAGTGAAGGAAACTGTGGCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGTTGGCATTCATTCTTCCATGCTAGTGAAGGAAACTGTGGCTCC  850

seq1  TAAAATAAAGATCTAGAGATTCTGTCATTTTTCGACAGTGATGGGGTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAGATCTAGAGATTCTGTCATTTTTCGACAGTGATGGGGTAGT  900

seq1  TAAGCACACAGATGT-GGGGGTGCTGGGAGTAGCAACAGACTAGTATTGT  949
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAAGCACACAGATGTGGGGGGTGCTGGGAGTAGCAACAGACTAGTATTGT  950

seq1  GAGTAGGAATTT-GGAGCCCACAAGGACCATCTCTGATACCCT-ATAGTA  997
      |||||||||||| |||||||||||| |||||||||||||| || ||||||
seq2  GAGTAGGAATTTGGGAGCCCACAAGAACCATCTCTGATACTCTAATAGTA  1000

seq1  -CTCCCAGGAAAGGAGGCT--GAGCAGAGA--TTGGGTGAG-CAGAG-AC  1040
       ||||||||||||||||||  || || |||  ||||||||| ||||| ||
seq2  TCTCCCAGGAAAGGAGGCTTGGACCAAAGAATTTGGGTGAGACAGAGAAC  1050

seq1  AGAGGCT-GGGTCA-AAGGAACAGGGTTTAGAG---ACTCAGATCACTTC  1085
      ||||||| |||||| |||||||| || ||| ||   |||  ||||| | |
seq2  AGAGGCTGGGGTCACAAGGAACAAGGGTTAAAGAGAACTACGATCA-TCC  1099

seq1  ATCCC--CTGCTCCATTTAAAA-CCGTA-CTCTTCGATACCCATGGCGTT  1131
      |||||  |  ||| |||||||| ||||| |||||||||||| ||||||||
seq2  ATCCCTTCGTCTCAATTTAAAACCCGTAGCTCTTCGATACCAATGGCGTT  1149

seq1  TGGGAGACACTCCTGAA  1148
       |||| || ||||||||
seq2  GGGGACACTCTCCTGAA  1166


seq1: chr17_89830358_89831528
seq2: B6Ng01-233I03.g_67_1239 (reverse)

seq1  GAAGAAAACTAGGCTTTTCTTCCA-GTTCTTCATCCATACAATATGGTAA  49
      |||||||||||||| ||||| ||| |||||  ||||||||||||||||||
seq2  GAAGAAAACTAGGCCTTTCTGCCAGGTTCTCAATCCATACAATATGGTAA  50

seq1  GTA-GCTTTTGGGTTTTCCCTGCTTTCTTGTGGAG-AAGAGTTTGAGAAG  97
      ||| ||||  || |||||||||||| ||||||||| |||||||  |||||
seq2  GTAGGCTTAGGGATTTTCCCTGCTTCCTTGTGGAGAAAGAGTTGAAGAAG  100

seq1  AT-ACTGCTTTCGTATCTGATCTCTGTCTAAGCAGCAG-CCCCTCCCAGA  145
      || ||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  ATAACTGC-TTCGTATCTGATCTCTGTCTAAGCAGCAGCCCCCTCCCAGA  149

seq1  GCAGAGAAGGGAGAAAAGAGAAAAGAAGATTCAAAGGTATGTGTAGAATG  195
      |||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  GCAGAG-AGGGAGAAAAGAGAAAAGAAGATTC-AAGGTATGTGTAGAATG  197

seq1  AGAATGATTTATTCTTGTGAAACTTGGGTAATGCACTCCTGTCATCGTAT  245
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGA-TTATTCTTGTGAAACTTGGGTAATGCACTCCTGTCATCGTAT  246

seq1  CAGCTGTCAAAAACGCCA-CCAACGTTTTTATTTACTTGTTTCAGCACCT  294
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGCTGTCAAAAACGCCACCCAACGTTTTTATTTACTTGTTTCAGCACCT  296

seq1  AGTCCTAGAAATCATCAGTCTTTCGAATTGGCACTTTAATTAAATCCTGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAGAAATCATCAGTCTTTCGAATTGGCACTTTAATTAAATCCTGA  346

seq1  AGGGAAGCTTCAGGGTGGGAATGCACACATGGTTAAGTGCCCATGTGCGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGCTTCAGGGTGGGAATGCACACATGGTTAAGTGCCCATGTGCGA  396

seq1  ATGTCTGCTCTTGGATGCCACTAGTGTTTATGTGTGCTGCATATATGTTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCTCTTGGATGCCACTAGTGTTTATGTGTGCTGCATATATGTTG  446

seq1  ACAGATTTATAATAAATGTGCATTTATAAGTGTGATTGCACTTTAGAAGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTATAATAAATGTGCATTTATAAGTGTGATTGCACTTTAGAAGT  496

seq1  TTTTAAAAGAGAAACATTTGTGGATTTGCAAAAATTATAACTCACTGCAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGAGAAACATTTGTGGATTTGCAAAAATTATAACTCACTGCAA  546

seq1  TAATTTTAAAATTTAATAGATTAATATATTCCTTTCAGGAGAGCTGTGGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAAAATTTAATAGATTAATATATTCCTTTCAGGAGAGCTGTGGA  596

seq1  AAAGTCACTCAAAACAAACATTTATTCTGAAATGTGAAGAATCTACTTTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACTCAAAACAAACATTTATTCTGAAATGTGAAGAATCTACTTTT  646

seq1  ATAACCTCTATTTCTTTATTATAGCATTTTAATTTTTAGAAAACCGTGGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTCTATTTCTTTATTATAGCATTTTAATTTTTAGAAAACCGTGGT  696

seq1  TGATGGTACTTAGTCTGTGCAAGTACAACAACAGTGAACCCGAGGATTCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTACTTAGTCTGTGCAAGTACAACAACAGTGAACCCGAGGATTCT  746

seq1  CACAAGTGGACCAAGGCCCAGGAAGCCAGCACCTCAGGTCTCTTCCATGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTGGACCAAGGCCCAGGAAGCCAGCACCTCAGGTCTCTTCCATGT  796

seq1  GAAGTAATAGCTCTGCTTAAAATTTTCCACTATTTTAGAAATAGTGCCAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAATAGCTCTGCTTAAAATTTTCCACTATTTTAGAAATAGTGCCAT  846

seq1  ATCTAAGCAAGAGGGTTTGATATTCTCCTCAAGTTTCTTATTACTGGGAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGCAAGAGGGTTTGATATTCTCCTCAAGTTTCTTATTACTGGGAC  896

seq1  TCAGTATCATGGATCTAATTCTGTCCTTTCTGCTGTTCTTTGTATAATTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATCATGGATCTAATTCTGTCCTTTCTGCTGTTCTTTGTATAATTA  946

seq1  ACTAATTTAGATCCCTCCCACATGGCACATGAGAGTTCAATTGTGAGAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTAGATCCCTCCCACATGGCACATGAGAGTTCAATTGTGAGAGA  996

seq1  TTTATTTCTTTAAACTCCAAACACCATCAGAAGATTTTCTCTCAATAAAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTTTAAACTCCAAACACCATCAGAAGATTTTCTCTCAATAAAA  1046

seq1  CATCTTTAGCAATCCCATACTCAAAGTATTTTTAATGTAAACATGTAATG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTAGCAATCCCATACTCAAAGTATTTTTAATGTAAACATGTAATG  1096

seq1  AAGTATTCCAAGATGAATTCCCTTAGCTACCACAAAGCCATGAACAGTAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTCCAAGATGAATTCCCTTAGCTACCACAAAGCCATGAACAGTAT  1146

seq1  AAGGCTGTTAATTGGAATGGTGAATTC  1171
      |||||||||||||||||||||||||||
seq2  AAGGCTGTTAATTGGAATGGTGAATTC  1173


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